Wall clock time and date at job start Tue Mar 31 2020 05:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86801 * 119.99664 * 2 1 4 4 H 1.48498 * 109.47384 * 240.00254 * 3 2 1 5 5 H 1.48506 * 109.47162 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47196 * 119.99996 * 3 2 1 7 7 C 1.39862 * 120.00381 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99676 * 190.96339 * 7 2 1 9 9 C 1.41132 * 120.00246 * 10.95773 * 7 2 1 10 10 C 1.40884 * 120.15840 * 208.86375 * 9 7 2 11 11 C 1.36335 * 119.84296 * 180.02562 * 10 9 7 12 12 C 1.39568 * 120.15560 * 359.97438 * 11 10 9 13 13 N 1.38862 * 119.84285 * 179.97438 * 12 11 10 14 14 S 1.65601 * 120.00040 * 104.48349 * 13 12 11 15 15 O 1.42099 * 106.40447 * 182.74846 * 14 13 12 16 16 O 1.42097 * 106.40246 * 49.82460 * 14 13 12 17 17 C 1.76200 * 107.21974 * 296.28656 * 14 13 12 18 18 C 1.39379 * 119.50443 * 266.06173 * 17 14 13 19 19 C 1.36088 * 120.98442 * 179.97438 * 18 17 14 20 20 C 1.40538 * 119.65750 * 0.04338 * 19 18 17 21 21 C 1.40543 * 121.28566 * 179.97438 * 20 19 18 22 22 C 1.36092 * 119.65553 * 179.97438 * 21 20 19 23 23 C 1.39374 * 120.98785 * 359.96093 * 22 21 20 24 24 C 1.36098 * 120.99201 * 0.05883 * 23 22 21 25 25 C 1.40534 * 119.65122 * 359.95978 * 24 23 22 26 26 C 1.36098 * 119.50380 * 86.08034 * 17 14 13 27 27 C 1.39570 * 120.31728 * 0.25511 * 12 11 10 28 28 C 1.36334 * 120.15704 * 359.48344 * 27 12 11 29 29 H 0.96992 * 120.00204 * 359.97438 * 1 2 3 30 30 H 1.08009 * 120.08182 * 359.97438 * 10 9 7 31 31 H 1.07998 * 119.92692 * 179.97438 * 11 10 9 32 32 H 0.96999 * 120.00085 * 284.49036 * 13 12 11 33 33 H 1.07996 * 119.50491 * 0.02562 * 18 17 14 34 34 H 1.08002 * 120.17148 * 179.97438 * 19 18 17 35 35 H 1.07996 * 120.17110 * 359.95532 * 21 20 19 36 36 H 1.07993 * 119.50578 * 180.02562 * 22 21 20 37 37 H 1.08002 * 119.50420 * 180.02562 * 23 22 21 38 38 H 1.07994 * 120.17034 * 180.23729 * 24 23 22 39 39 H 1.07997 * 120.17089 * 359.95712 * 26 17 14 40 40 H 1.08000 * 119.91802 * 179.71872 * 27 12 11 41 41 H 1.08000 * 120.07839 * 180.23268 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0967 1.6966 -1.2125 5 1 1.2779 2.7465 -0.0006 6 1 3.0967 1.6965 1.2125 7 6 2.0085 -1.2112 -0.0005 8 1 3.0737 -1.2197 0.1773 9 6 1.3222 -2.4223 -0.2334 10 6 1.7968 -3.6240 0.3283 11 6 1.1292 -4.7903 0.0987 12 6 -0.0222 -4.7955 -0.6902 13 7 -0.6968 -5.9873 -0.9202 14 16 -2.1158 -6.3020 -0.1265 15 8 -2.5165 -7.6064 -0.5229 16 8 -2.9338 -5.1526 -0.2960 17 6 -1.7418 -6.3973 1.5927 18 6 -1.4742 -7.6378 2.1692 19 6 -1.1815 -7.7462 3.4938 20 6 -1.1484 -6.5923 4.2954 21 6 -0.8505 -6.6647 5.6670 22 6 -0.8271 -5.5261 6.4120 23 6 -1.0937 -4.2856 5.8353 24 6 -1.3864 -4.1770 4.5106 25 6 -1.4203 -5.3309 3.7092 26 6 -1.7189 -5.2587 2.3378 27 6 -0.4955 -3.6096 -1.2537 28 6 0.1591 -2.4351 -1.0282 29 1 -0.4850 0.8400 0.0004 30 1 2.6879 -3.6215 0.9386 31 1 1.4920 -5.7124 0.5282 32 1 -0.3369 -6.6354 -1.5457 33 1 -1.4988 -8.5260 1.5554 34 1 -0.9766 -8.7141 3.9270 35 1 -0.6416 -7.6190 6.1274 36 1 -0.5975 -5.5845 7.4656 37 1 -1.0682 -3.3972 6.4489 38 1 -1.5871 -3.2086 4.0767 39 1 -1.9280 -4.3044 1.8773 40 1 -1.3845 -3.6218 -1.8669 41 1 -0.2104 -1.5176 -1.4619 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000582536.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:23 Heat of formation + Delta-G solvation = -27.731475 kcal Electronic energy + Delta-G solvation = -28201.259840 eV Core-core repulsion = 24329.545853 eV Total energy + Delta-G solvation = -3871.713987 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 353.087 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.34684 -39.80553 -38.30189 -37.54624 -36.97105 -36.49335 -34.56494 -33.83520 -31.53548 -31.42044 -30.55327 -30.29942 -26.57373 -24.94689 -24.19672 -23.01701 -22.91869 -22.66675 -20.70525 -19.26692 -19.19106 -18.73052 -18.27393 -18.05865 -17.71918 -17.07412 -16.18684 -16.16440 -15.75570 -15.70252 -15.44852 -14.91766 -14.76854 -14.58417 -14.41291 -14.19792 -14.01630 -13.93566 -13.42063 -13.36778 -13.26022 -13.21367 -13.08202 -12.82429 -12.64906 -12.53546 -12.43939 -12.36865 -11.94924 -11.87858 -11.69793 -11.56035 -11.11225 -11.09941 -10.52114 -9.86520 -9.50736 -9.19323 -9.01676 -8.63761 -6.38613 -0.79706 -0.55558 -0.20226 0.83732 0.94083 1.15738 1.40615 1.51081 1.52679 1.70363 2.12197 2.20606 2.65441 2.70935 3.02977 3.30987 3.58671 3.66757 3.82549 3.89324 4.06769 4.14479 4.26764 4.34961 4.41553 4.44195 4.46855 4.64749 4.69363 4.85332 4.93616 5.03667 5.05451 5.11664 5.16027 5.22033 5.28439 5.35522 5.48491 5.49957 5.66519 5.77033 5.81696 5.96134 6.03309 6.08126 6.27600 6.39105 6.65793 6.88937 6.99272 8.31253 Molecular weight = 353.09amu Principal moments of inertia in cm(-1) A = 0.009353 B = 0.004225 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2992.990637 B = 6625.924744 C = 8708.465036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.033 3.967 3 Si 0.984 3.016 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.258 1.258 7 C -0.484 4.484 8 H 0.083 0.917 9 C 0.094 3.906 10 C -0.229 4.229 11 C -0.068 4.068 12 C -0.014 4.014 13 N -1.026 6.026 14 S 2.693 3.307 15 O -0.982 6.982 16 O -0.990 6.990 17 C -0.669 4.669 18 C -0.061 4.061 19 C -0.113 4.113 20 C -0.031 4.031 21 C -0.119 4.119 22 C -0.094 4.094 23 C -0.121 4.121 24 C -0.114 4.114 25 C -0.096 4.096 26 C 0.010 3.990 27 C -0.088 4.088 28 C -0.179 4.179 29 H 0.289 0.711 30 H 0.106 0.894 31 H 0.121 0.879 32 H 0.423 0.577 33 H 0.154 0.846 34 H 0.173 0.827 35 H 0.166 0.834 36 H 0.163 0.837 37 H 0.149 0.851 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.099 0.901 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.051 -10.820 11.242 15.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.182 4.182 3 Si 0.805 3.195 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.182 1.182 7 C -0.513 4.513 8 H 0.101 0.899 9 C 0.091 3.909 10 C -0.249 4.249 11 C -0.089 4.089 12 C -0.110 4.110 13 N -0.782 5.782 14 S 2.788 3.212 15 O -0.973 6.973 16 O -0.980 6.980 17 C -0.758 4.758 18 C -0.080 4.080 19 C -0.132 4.132 20 C -0.031 4.031 21 C -0.136 4.136 22 C -0.112 4.112 23 C -0.138 4.138 24 C -0.132 4.132 25 C -0.097 4.097 26 C -0.009 4.009 27 C -0.109 4.109 28 C -0.200 4.200 29 H 0.100 0.900 30 H 0.124 0.876 31 H 0.139 0.861 32 H 0.263 0.737 33 H 0.172 0.828 34 H 0.190 0.810 35 H 0.183 0.817 36 H 0.180 0.820 37 H 0.166 0.834 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.117 0.883 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.110 -10.716 10.951 15.362 hybrid contribution 0.570 1.007 -0.191 1.173 sum -0.540 -9.709 10.760 14.503 Atomic orbital electron populations 1.69891 1.08957 1.30761 1.35227 1.26798 0.95537 1.04613 0.91267 0.85214 0.78662 0.75492 0.80171 1.18354 1.19524 1.18185 1.19874 0.96527 0.91523 1.43420 0.89855 1.18036 0.91557 0.93272 0.88023 1.20859 1.03916 0.93145 1.06996 1.20724 0.94278 0.97480 0.96402 1.16564 0.99439 0.84317 1.10681 1.52041 1.43461 1.26028 1.56699 1.01937 0.73173 0.72168 0.73921 1.93501 1.81335 1.39904 1.82521 1.93543 1.66500 1.52129 1.85831 1.30304 1.19686 1.00405 1.25387 1.20681 0.95473 0.95036 0.96820 1.21451 0.99686 0.98901 0.93121 1.18615 0.96597 0.92403 0.95490 1.21469 0.99914 1.00968 0.91298 1.21408 0.96381 0.91563 1.01823 1.21262 0.98544 0.99723 0.94309 1.21329 0.99223 0.97339 0.95284 1.18384 1.02953 0.95033 0.93351 1.20970 0.88991 0.97115 0.93865 1.20904 0.98440 0.93057 0.98487 1.20953 0.99631 0.96526 1.02856 0.90019 0.87554 0.86146 0.73748 0.82831 0.80961 0.81693 0.81973 0.83365 0.85938 0.86124 0.88282 0.87727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.01 10.85 21.82 0.24 -41.77 16 2 C 0.03 1.61 5.24 85.22 0.45 2.05 16 3 Si 0.98 36.59 29.57 68.60 2.03 38.62 16 4 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 5 H -0.27 -9.67 7.11 99.48 0.71 -8.97 16 6 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 7 C -0.48 -24.69 9.04 23.37 0.21 -24.48 16 8 H 0.08 4.02 7.87 -2.91 -0.02 4.00 16 9 C 0.09 4.84 5.55 -21.27 -0.12 4.72 16 10 C -0.23 -10.48 9.74 22.47 0.22 -10.26 16 11 C -0.07 -2.77 9.90 22.15 0.22 -2.55 16 12 C -0.01 -0.58 5.78 38.67 0.22 -0.35 16 13 N -1.03 -35.27 5.65 -51.06 -0.29 -35.56 16 14 S 2.69 96.59 5.69 -56.49 -0.32 96.26 16 15 O -0.98 -35.35 17.14 -128.00 -2.19 -37.55 16 16 O -0.99 -43.05 16.38 -128.00 -2.10 -45.15 16 17 C -0.67 -22.37 5.84 22.05 0.13 -22.24 16 18 C -0.06 -1.66 9.42 22.04 0.21 -1.45 16 19 C -0.11 -2.58 9.77 22.33 0.22 -2.36 16 20 C -0.03 -0.79 5.74 -21.29 -0.12 -0.91 16 21 C -0.12 -2.18 9.77 22.33 0.22 -1.96 16 22 C -0.09 -1.61 9.95 22.04 0.22 -1.39 16 23 C -0.12 -2.60 9.95 22.05 0.22 -2.38 16 24 C -0.11 -3.28 9.77 22.33 0.22 -3.06 16 25 C -0.10 -3.04 5.74 -21.30 -0.12 -3.17 16 26 C 0.01 0.37 9.21 22.33 0.21 0.58 16 27 C -0.09 -4.15 9.23 22.15 0.20 -3.94 16 28 C -0.18 -9.30 8.60 22.47 0.19 -9.11 16 29 H 0.29 13.47 8.30 -92.71 -0.77 12.70 16 30 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 31 H 0.12 4.20 8.06 -2.91 -0.02 4.18 16 32 H 0.42 11.80 8.95 -96.75 -0.87 10.94 16 33 H 0.15 3.53 7.48 -2.91 -0.02 3.50 16 34 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 35 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 36 H 0.16 1.55 8.06 -2.91 -0.02 1.52 16 37 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 38 H 0.12 3.66 8.06 -2.91 -0.02 3.63 16 39 H 0.12 4.85 7.64 -2.91 -0.02 4.83 16 40 H 0.10 4.59 7.96 -2.91 -0.02 4.56 16 41 H 0.10 5.73 6.22 -2.91 -0.02 5.71 16 Total: -1.00 -67.52 365.67 0.57 -66.95 By element: Atomic # 1 Polarization: 40.25 SS G_CDS: 0.21 Total: 40.46 kcal Atomic # 6 Polarization: -85.26 SS G_CDS: 2.99 Total: -82.27 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -0.05 Total: -77.33 kcal Atomic # 8 Polarization: -78.41 SS G_CDS: -4.29 Total: -82.70 kcal Atomic # 14 Polarization: 36.59 SS G_CDS: 2.03 Total: 38.62 kcal Atomic # 16 Polarization: 96.59 SS G_CDS: -0.32 Total: 96.26 kcal Total: -67.52 0.57 -66.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000582536.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.218 kcal (2) G-P(sol) polarization free energy of solvation -67.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds