Wall clock time and date at job start Tue Mar 31 2020 05:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 120.00102 * 2 1 4 4 C 1.50695 * 109.46910 * 270.00310 * 3 2 1 5 5 H 1.08008 * 120.00285 * 359.97438 * 4 3 2 6 6 C 1.37882 * 119.99856 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99642 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 119.99899 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.46968 * 90.00477 * 8 6 4 10 10 H 1.48501 * 109.47101 * 210.00210 * 8 6 4 11 11 H 1.48493 * 109.47216 * 330.00329 * 8 6 4 12 12 C 1.39211 * 119.99703 * 180.02562 * 2 1 3 13 13 C 1.39226 * 119.89483 * 359.97438 * 12 2 1 14 14 C 1.37102 * 120.10603 * 179.97438 * 13 12 2 15 15 C 1.40120 * 119.89104 * 0.02562 * 14 13 12 16 16 C 1.46706 * 120.10381 * 179.97438 * 15 14 13 17 17 C 1.36176 * 119.99843 * 144.29950 * 16 15 14 18 18 C 1.43199 * 119.99908 * 352.50601 * 17 16 15 19 19 N 6.08301 * 141.48359 * 215.83493 * 2 1 3 20 20 C 1.48104 * 119.99577 * 172.50196 * 17 16 15 21 21 C 1.39499 * 120.12748 * 294.71954 * 20 17 16 22 22 C 1.37952 * 119.87595 * 179.79054 * 21 20 17 23 23 C 1.38466 * 120.12388 * 0.49123 * 22 21 20 24 24 Cl 1.73598 * 119.87584 * 179.71873 * 23 22 21 25 25 C 1.38464 * 120.24590 * 359.74653 * 23 22 21 26 26 C 1.37949 * 120.12669 * 0.02562 * 25 23 22 27 27 C 1.40115 * 119.79226 * 0.26805 * 15 14 13 28 28 C 1.37105 * 119.88920 * 359.44828 * 27 15 14 29 29 H 1.09006 * 109.47064 * 270.00396 * 1 2 3 30 30 H 1.09000 * 109.47257 * 29.99614 * 1 2 3 31 31 H 1.08994 * 109.47371 * 149.99812 * 1 2 3 32 32 H 1.08994 * 109.47105 * 29.99877 * 3 2 1 33 33 H 1.08996 * 109.46789 * 150.00191 * 3 2 1 34 34 H 0.97008 * 119.99249 * 179.97438 * 7 6 4 35 35 H 1.07992 * 119.94743 * 359.95797 * 13 12 2 36 36 H 1.07998 * 120.05771 * 180.02562 * 14 13 12 37 37 H 1.07999 * 119.99408 * 324.02459 * 16 15 14 38 38 H 1.07999 * 120.05709 * 0.03067 * 21 20 17 39 39 H 1.08001 * 119.93560 * 180.23445 * 22 21 20 40 40 H 1.08005 * 119.93848 * 180.02562 * 25 23 22 41 41 H 1.08004 * 120.06505 * 179.97438 * 26 25 23 42 42 H 1.07997 * 120.05424 * 179.72717 * 27 15 14 43 43 H 1.07995 * 119.94960 * 180.27647 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0957 -2.2417 6 6 3.1269 2.8775 -1.6728 7 7 3.3455 3.2573 -2.9127 8 14 3.7339 3.9287 -0.2529 9 1 5.1071 3.5068 0.1235 10 1 3.7498 5.3553 -0.6648 11 1 2.8275 3.7595 0.9110 12 6 2.1610 -1.2056 -0.0005 13 6 1.4626 -2.4101 -0.0005 14 6 2.1436 -3.5999 -0.0016 15 6 3.5448 -3.6025 -0.0021 16 6 4.2783 -4.8730 -0.0027 17 6 5.4479 -4.9837 -0.6914 18 6 5.8808 -3.9172 -1.5432 19 7 6.2245 -3.0711 -2.2178 20 6 6.2721 -6.2071 -0.5592 21 6 6.8613 -6.5256 0.6645 22 6 7.6244 -7.6687 0.7829 23 6 7.8144 -8.4940 -0.3126 24 17 8.7820 -9.9270 -0.1582 25 6 7.2361 -8.1802 -1.5309 26 6 6.4671 -7.0421 -1.6596 27 6 4.2432 -2.3879 0.0041 28 6 3.5533 -1.2030 -0.0008 29 1 -0.3633 0.0001 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5138 32 1 1.6085 2.0284 0.5138 33 1 3.1499 1.1383 0.5138 34 1 3.8224 4.0833 -3.0900 35 1 0.3827 -2.4070 0.0006 36 1 1.6011 -4.5338 -0.0020 37 1 3.8929 -5.7192 0.5467 38 1 6.7170 -5.8804 1.5185 39 1 8.0779 -7.9182 1.7308 40 1 7.3872 -8.8276 -2.3821 41 1 6.0168 -6.7980 -2.6105 42 1 5.3232 -2.3849 0.0082 43 1 4.0907 -0.2662 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001735971.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:27 Heat of formation + Delta-G solvation = 100.636438 kcal Electronic energy + Delta-G solvation = -26139.916931 eV Core-core repulsion = 22369.444350 eV Total energy + Delta-G solvation = -3770.472580 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 352.104 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.83259 -39.24748 -37.31446 -36.64297 -35.77288 -33.91202 -32.68391 -31.43358 -30.89196 -30.82358 -28.70121 -28.01498 -25.61303 -23.78033 -23.09013 -22.40514 -22.21516 -21.25385 -19.93966 -18.10369 -17.19193 -17.02409 -16.43515 -15.89057 -15.58244 -15.22454 -14.66138 -14.55527 -14.34214 -14.00761 -13.87011 -13.78923 -13.70352 -13.41369 -13.22075 -13.09430 -12.80265 -12.47801 -12.27270 -12.21187 -12.00408 -11.90751 -11.76619 -11.71111 -11.57382 -11.19543 -11.15247 -11.04853 -10.71269 -10.42763 -10.28103 -9.89365 -9.57419 -9.40051 -9.08322 -8.73025 -8.62977 -8.53433 -6.56842 -6.20880 -4.22424 0.50879 0.96498 1.01201 1.79617 1.88715 2.22127 2.96844 3.16985 3.23475 3.24268 3.25313 3.58758 3.81833 4.11045 4.25562 4.26232 4.49264 4.53499 4.55992 4.96813 5.06405 5.08493 5.11934 5.17524 5.23359 5.32871 5.54981 5.61182 5.62561 5.74704 5.82374 5.88072 5.88494 5.97534 6.05653 6.12659 6.16541 6.26400 6.29640 6.42191 6.55906 6.60125 6.77742 6.83484 6.97140 7.23697 7.43120 7.79396 7.81352 8.09086 8.39236 8.85289 9.37432 10.91974 Molecular weight = 352.10amu Principal moments of inertia in cm(-1) A = 0.017195 B = 0.002002 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.981240 B =13980.805869 C =14837.090761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.598 5.598 3 C 0.216 3.784 4 C -0.540 4.540 5 H 0.077 0.923 6 C 0.074 3.926 7 N -0.890 5.890 8 Si 0.872 3.128 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.265 1.265 12 C 0.262 3.738 13 C -0.225 4.225 14 C -0.034 4.034 15 C -0.192 4.192 16 C 0.035 3.965 17 C -0.080 4.080 18 C 0.252 3.748 19 N -0.417 5.417 20 C -0.023 4.023 21 C -0.089 4.089 22 C -0.110 4.110 23 C -0.035 4.035 24 Cl -0.075 7.075 25 C -0.110 4.110 26 C -0.090 4.090 27 C -0.039 4.039 28 C -0.191 4.191 29 H 0.042 0.958 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.032 0.968 33 H 0.030 0.970 34 H 0.266 0.734 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.114 0.886 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.745 -24.060 9.891 26.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.299 5.299 3 C 0.095 3.905 4 C -0.578 4.578 5 H 0.095 0.905 6 C -0.129 4.129 7 N -0.527 5.527 8 Si 0.699 3.301 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.190 1.190 12 C 0.152 3.848 13 C -0.248 4.248 14 C -0.053 4.053 15 C -0.195 4.195 16 C 0.013 3.987 17 C -0.083 4.083 18 C -0.062 4.062 19 N -0.092 5.092 20 C -0.024 4.024 21 C -0.107 4.107 22 C -0.129 4.129 23 C -0.061 4.061 24 Cl -0.046 7.046 25 C -0.128 4.128 26 C -0.108 4.108 27 C -0.059 4.059 28 C -0.213 4.213 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.132 0.868 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.319 -22.460 8.732 24.325 hybrid contribution 0.352 0.315 0.693 0.839 sum 3.671 -22.145 9.425 24.345 Atomic orbital electron populations 1.21609 0.80503 1.02809 1.00184 1.46844 1.04948 1.04271 1.73859 1.19773 0.92035 0.80436 0.98219 1.21394 1.37572 1.07534 0.91300 0.90509 1.24902 0.95259 0.97235 0.95538 1.69898 1.40748 1.23428 1.18664 0.86917 0.79998 0.80308 0.82925 1.19814 1.20802 1.19000 1.18163 0.91492 0.86094 0.89016 1.20428 0.99503 0.91143 1.13698 1.20727 0.92446 0.97149 0.95015 1.18486 0.93341 0.91850 1.15830 1.22452 0.90093 0.95826 0.90345 1.16497 0.98135 0.90877 1.02838 1.25531 0.93982 0.93001 0.93728 1.81319 1.08074 1.09503 1.10327 1.18551 0.97013 0.93078 0.93733 1.21315 0.95820 0.96229 0.97340 1.20997 0.99576 0.94263 0.98029 1.21042 0.98548 0.90685 0.95848 1.98375 1.70092 1.38002 1.98136 1.20998 0.97638 0.97895 0.96308 1.21327 0.97371 0.93259 0.98857 1.20976 0.98756 0.91370 0.94750 1.20655 0.92515 0.98961 1.09213 0.93937 0.90844 0.92012 0.95041 0.95271 0.92362 0.86078 0.86244 0.84259 0.84347 0.84671 0.84763 0.84702 0.86838 0.84967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.45 10.18 59.85 0.61 2.06 16 2 N -0.60 -11.72 2.98 -180.95 -0.54 -12.26 16 3 C 0.22 4.91 3.97 -5.19 -0.02 4.89 16 4 C -0.54 -14.79 9.94 -34.44 -0.34 -15.13 16 5 H 0.08 2.37 8.06 -52.48 -0.42 1.95 16 6 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.89 -26.90 13.96 55.43 0.77 -26.12 16 8 Si 0.87 20.55 27.47 -169.99 -4.67 15.88 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -5.87 6.54 56.52 0.37 -5.50 16 12 C 0.26 4.88 6.56 -83.77 -0.55 4.33 16 13 C -0.22 -3.41 9.16 -39.63 -0.36 -3.77 16 14 C -0.03 -0.45 9.77 -39.29 -0.38 -0.83 16 15 C -0.19 -2.61 5.46 -105.07 -0.57 -3.18 16 16 C 0.04 0.35 9.49 -36.90 -0.35 0.00 16 17 C -0.08 -0.87 5.23 -104.67 -0.55 -1.42 16 18 C 0.25 3.77 11.75 -22.50 -0.26 3.51 16 19 N -0.42 -7.64 18.29 41.81 0.76 -6.88 16 20 C -0.02 -0.21 5.31 -104.91 -0.56 -0.76 16 21 C -0.09 -0.69 9.73 -39.22 -0.38 -1.07 16 22 C -0.11 -0.82 9.81 -39.60 -0.39 -1.21 16 23 C -0.03 -0.28 6.32 -39.41 -0.25 -0.53 16 24 Cl -0.07 -0.59 28.95 -51.86 -1.50 -2.09 16 25 C -0.11 -0.87 9.81 -39.60 -0.39 -1.26 16 26 C -0.09 -0.78 9.75 -39.22 -0.38 -1.16 16 27 C -0.04 -0.65 8.24 -39.29 -0.32 -0.97 16 28 C -0.19 -3.68 9.16 -39.62 -0.36 -4.04 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 31 H 0.06 0.85 6.17 -51.93 -0.32 0.53 16 32 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 33 H 0.03 0.66 5.60 -51.93 -0.29 0.37 16 34 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.12 1.59 6.11 -52.49 -0.32 1.27 16 36 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 38 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 41 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 42 H 0.11 1.85 6.17 -52.49 -0.32 1.52 16 43 H 0.13 2.81 6.11 -52.49 -0.32 2.49 16 LS Contribution 385.71 15.07 5.81 5.81 Total: -1.00 -32.09 385.71 -10.19 -42.28 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -4.92 Total: 1.95 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -5.92 Total: -18.57 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 1.00 Total: -45.26 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.09 -10.19 -42.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001735971.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.915 kcal (2) G-P(sol) polarization free energy of solvation -32.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds