Wall clock time and date at job start Tue Mar 31 2020 05:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38268 * 119.96809 * 2 1 4 4 C 1.38281 * 120.11955 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.97275 * 179.97438 * 4 3 2 6 6 C 1.38130 * 120.05566 * 359.95650 * 4 3 2 7 7 C 1.38774 * 119.94143 * 0.02562 * 6 4 3 8 8 O 1.35869 * 120.05902 * 180.02562 * 7 6 4 9 9 C 1.36116 * 117.99975 * 67.17204 * 8 7 6 10 10 C 1.34802 * 120.22295 * 6.08811 * 9 8 7 11 11 O 1.33954 * 122.74045 * 179.68551 * 10 9 8 12 12 C 1.34834 * 122.41091 * 0.58965 * 11 10 9 13 13 C 1.38768 * 120.95129 * 179.70536 * 12 11 10 14 14 C 1.38597 * 119.73365 * 179.72337 * 13 12 11 15 15 O 1.35608 * 119.72350 * 180.02562 * 14 13 12 16 16 C 1.34811 * 116.99883 * 354.13630 * 15 14 13 17 17 H 1.07997 * 120.00411 * 5.09037 * 16 15 14 18 18 C 1.38697 * 120.00108 * 185.08200 * 16 15 14 19 19 N 1.31530 * 120.00333 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00019 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47154 * 89.99705 * 20 18 16 22 22 H 1.48501 * 109.47157 * 209.99875 * 20 18 16 23 23 H 1.48501 * 109.46546 * 329.99577 * 20 18 16 24 24 C 1.39488 * 120.55597 * 0.02562 * 14 13 12 25 25 C 1.36506 * 120.36927 * 0.02562 * 24 14 13 26 26 C 1.39610 * 119.74639 * 359.96351 * 25 24 14 27 27 C 1.42386 * 120.22272 * 186.06146 * 9 8 7 28 28 O 1.21968 * 121.39116 * 0.02562 * 27 9 8 29 29 C 1.38135 * 119.97076 * 180.27462 * 2 1 3 30 30 H 1.09004 * 109.47263 * 90.00188 * 1 2 3 31 31 H 1.09000 * 109.47439 * 209.99915 * 1 2 3 32 32 H 1.08997 * 109.47656 * 329.99996 * 1 2 3 33 33 H 1.07998 * 119.94751 * 0.02562 * 3 2 1 34 34 H 1.08996 * 109.47039 * 269.98281 * 5 4 3 35 35 H 1.09003 * 109.46850 * 29.98503 * 5 4 3 36 36 H 1.09003 * 109.46752 * 149.97622 * 5 4 3 37 37 H 1.08003 * 120.03115 * 180.02562 * 6 4 3 38 38 H 1.07993 * 118.63023 * 359.97438 * 10 9 8 39 39 H 1.07999 * 120.13488 * 359.75348 * 13 12 11 40 40 H 0.96991 * 120.00166 * 180.02562 * 19 18 16 41 41 H 1.08004 * 119.81169 * 179.97438 * 24 14 13 42 42 H 1.07996 * 120.12355 * 180.02562 * 25 24 14 43 43 H 1.08001 * 120.02667 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1978 0.0000 4 6 3.5805 1.2015 -0.0005 5 6 4.3299 2.5089 -0.0011 6 6 4.2754 0.0077 -0.0002 7 6 3.5847 -1.1959 0.0002 8 8 4.2659 -2.3715 0.0011 9 6 4.9892 -2.6900 1.1093 10 6 4.9209 -1.9150 2.2101 11 8 5.6058 -2.1844 3.3294 12 6 6.4269 -3.2486 3.4357 13 6 7.1267 -3.4957 4.6083 14 6 7.9596 -4.6003 4.6919 15 8 8.6430 -4.8418 5.8381 16 6 8.5620 -3.9082 6.8072 17 1 7.9078 -3.0578 6.6846 18 6 9.3189 -4.0400 7.9620 19 7 9.2403 -3.1289 8.9074 20 14 10.4509 -5.5107 8.1741 21 1 11.7931 -5.1848 7.6288 22 1 10.5695 -5.8400 9.6173 23 1 9.8899 -6.6763 7.4449 24 6 8.1009 -5.4657 3.6071 25 6 7.4196 -5.2349 2.4469 26 6 6.5767 -4.1265 2.3474 27 6 5.8227 -3.8444 1.1137 28 8 5.9097 -4.5690 0.1364 29 6 2.1971 -1.1966 -0.0057 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6563 2.1323 0.0004 34 1 4.5104 2.8237 -1.0289 35 1 3.7385 3.2669 0.5126 36 1 5.2827 2.3817 0.5128 37 1 5.3555 0.0111 -0.0002 38 1 4.2841 -1.0431 2.1904 39 1 7.0224 -2.8301 5.4525 40 1 9.7698 -3.2208 9.7148 41 1 8.7535 -6.3227 3.6853 42 1 7.5316 -5.9077 1.6096 43 1 1.6570 -2.1319 -0.0098 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001915103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:35 Heat of formation + Delta-G solvation = -51.204632 kcal Electronic energy + Delta-G solvation = -29481.429176 eV Core-core repulsion = 25231.370357 eV Total energy + Delta-G solvation = -4250.058819 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.119 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.73112 -40.53258 -39.15826 -38.70038 -37.90468 -36.15441 -33.92086 -32.74083 -32.07652 -31.11878 -30.28122 -29.29885 -27.63974 -27.11181 -25.96086 -24.66692 -23.24590 -22.67608 -21.47928 -21.16233 -19.33358 -18.85011 -18.32561 -17.51852 -16.86159 -16.69250 -16.54565 -15.88949 -15.75768 -15.31214 -15.01362 -14.68497 -14.32987 -14.21736 -14.09206 -14.02908 -13.91006 -13.55510 -13.53160 -13.34015 -13.26779 -13.00272 -12.86838 -12.64806 -12.46908 -12.13035 -12.01889 -11.89450 -11.57214 -11.46976 -11.23560 -10.95488 -10.90396 -10.47514 -9.80197 -9.56415 -9.19942 -9.13050 -8.96114 -8.75928 -7.87292 -7.78906 -6.74406 -4.40049 0.74337 0.91689 0.96255 1.35813 1.99318 2.59831 2.92421 3.03614 3.09310 3.20815 3.25277 3.40503 3.98426 4.21593 4.32125 4.39768 4.42121 4.44812 4.66580 4.76837 4.79989 4.85289 4.95870 4.98657 5.11956 5.17417 5.20179 5.24949 5.30254 5.44610 5.48636 5.54343 5.63932 5.72136 5.81154 5.88415 5.96810 6.06691 6.11815 6.22463 6.26430 6.44124 6.47934 6.72419 6.76412 7.03322 7.33728 7.45022 7.56275 7.68664 7.92157 8.56973 9.12526 10.30637 Molecular weight = 352.12amu Principal moments of inertia in cm(-1) A = 0.015931 B = 0.002343 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.125251 B =11948.275323 C =12925.091362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.066 4.066 3 C -0.125 4.125 4 C -0.064 4.064 5 C -0.117 4.117 6 C -0.154 4.154 7 C 0.088 3.912 8 O -0.230 6.230 9 C -0.083 4.083 10 C 0.032 3.968 11 O -0.211 6.211 12 C 0.190 3.810 13 C -0.257 4.257 14 C 0.206 3.794 15 O -0.185 6.185 16 C -0.394 4.394 17 H 0.115 0.885 18 C 0.070 3.930 19 N -0.856 5.856 20 Si 0.907 3.093 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.256 1.256 24 C -0.202 4.202 25 C 0.008 3.992 26 C -0.303 4.303 27 C 0.440 3.560 28 O -0.475 6.475 29 C -0.129 4.129 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.127 0.873 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.132 0.868 38 H 0.188 0.812 39 H 0.153 0.847 40 H 0.286 0.714 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.421 8.539 -13.843 20.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.066 4.066 3 C -0.143 4.143 4 C -0.064 4.064 5 C -0.173 4.173 6 C -0.173 4.173 7 C 0.046 3.954 8 O -0.143 6.143 9 C -0.127 4.127 10 C -0.034 4.034 11 O -0.115 6.115 12 C 0.145 3.855 13 C -0.276 4.276 14 C 0.149 3.851 15 O -0.086 6.086 16 C -0.468 4.468 17 H 0.132 0.868 18 C -0.137 4.137 19 N -0.491 5.491 20 Si 0.731 3.269 21 H -0.194 1.194 22 H -0.203 1.203 23 H -0.180 1.180 24 C -0.221 4.221 25 C -0.011 4.011 26 C -0.306 4.306 27 C 0.327 3.673 28 O -0.358 6.358 29 C -0.147 4.147 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.145 0.855 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.150 0.850 38 H 0.204 0.796 39 H 0.171 0.829 40 H 0.097 0.903 41 H 0.150 0.850 42 H 0.154 0.846 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.159 8.079 -13.945 20.188 hybrid contribution 0.345 -0.179 0.195 0.435 sum -11.813 7.900 -13.751 19.775 Atomic orbital electron populations 1.20815 0.90457 1.03205 1.02668 1.19782 0.96348 0.92221 0.98229 1.21002 0.93411 0.97780 1.02135 1.19790 0.93702 0.94947 0.97960 1.20836 1.00239 0.93561 1.02702 1.21437 1.00857 0.91487 1.03472 1.18861 0.90731 0.84638 1.01212 1.84549 1.60068 1.35348 1.34327 1.20810 1.02783 1.01173 0.87982 1.23577 0.95889 0.99739 0.84166 1.83096 1.50728 1.42996 1.34704 1.19025 0.88519 0.83895 0.94071 1.20298 1.05394 1.03968 0.97977 1.18875 0.89167 0.91254 0.85832 1.83557 1.59931 1.44359 1.20801 1.20960 1.27548 1.03250 0.95076 0.86766 1.24580 0.96899 0.98325 0.93937 1.69616 1.38856 1.33261 1.07323 0.86150 0.80639 0.82133 0.77961 1.19390 1.20297 1.17952 1.20046 1.06980 1.02977 0.92081 1.20233 0.90788 0.93488 0.96572 1.19803 1.12050 1.03526 0.95241 1.18082 0.79235 0.82521 0.87499 1.90691 1.61238 1.48483 1.35376 1.21063 0.92233 0.98884 1.02554 0.90819 0.91154 0.91167 0.85512 0.90805 0.91134 0.91066 0.85047 0.79596 0.82949 0.90333 0.85008 0.84614 0.84890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.01 36.01 0.36 -0.34 16 2 C -0.07 -0.58 5.88 -104.65 -0.62 -1.19 16 3 C -0.13 -1.04 9.35 -39.55 -0.37 -1.41 16 4 C -0.06 -0.58 5.88 -104.65 -0.62 -1.20 16 5 C -0.12 -0.79 10.01 36.00 0.36 -0.43 16 6 C -0.15 -1.72 7.98 -39.42 -0.31 -2.03 16 7 C 0.09 1.12 4.70 -39.19 -0.18 0.94 16 8 O -0.23 -3.68 9.87 -19.08 -0.19 -3.87 16 9 C -0.08 -1.38 6.56 -39.21 -0.26 -1.63 16 10 C 0.03 0.48 10.11 29.51 0.30 0.78 16 11 O -0.21 -3.57 9.74 5.16 0.05 -3.52 16 12 C 0.19 3.58 6.77 -38.48 -0.26 3.32 16 13 C -0.26 -5.23 9.12 -39.25 -0.36 -5.59 16 14 C 0.21 4.33 6.65 -38.98 -0.26 4.07 16 15 O -0.19 -4.39 8.57 0.54 0.00 -4.39 16 16 C -0.39 -10.07 9.94 30.90 0.31 -9.76 16 17 H 0.12 2.98 5.41 -52.49 -0.28 2.70 16 18 C 0.07 1.78 5.49 -17.51 -0.10 1.69 16 19 N -0.86 -22.67 13.96 55.48 0.77 -21.90 16 20 Si 0.91 19.66 28.62 -169.99 -4.86 14.79 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 24 C -0.20 -3.69 9.92 -39.74 -0.39 -4.08 16 25 C 0.01 0.14 9.61 -39.69 -0.38 -0.24 16 26 C -0.30 -5.68 5.89 -104.80 -0.62 -6.29 16 27 C 0.44 8.31 7.00 -34.30 -0.24 8.07 16 28 O -0.47 -9.93 17.22 -9.92 -0.17 -10.10 16 29 C -0.13 -1.40 9.64 -39.42 -0.38 -1.78 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 32 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 33 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 36 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 37 H 0.13 1.45 8.06 -52.48 -0.42 1.02 16 38 H 0.19 2.25 5.97 -52.49 -0.31 1.93 16 39 H 0.15 3.21 5.60 -52.49 -0.29 2.92 16 40 H 0.29 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.13 2.13 8.06 -52.48 -0.42 1.70 16 42 H 0.14 2.14 7.80 -52.49 -0.41 1.73 16 43 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 373.76 15.07 5.63 5.63 Total: -1.00 -29.14 373.76 -7.43 -36.57 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -4.65 Total: 3.93 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -4.02 Total: -17.14 kcal Atomic # 7 Polarization: -22.67 SS G_CDS: 0.77 Total: -21.90 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.30 Total: -21.88 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.86 Total: 14.79 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.14 -7.43 -36.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001915103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.639 kcal (2) G-P(sol) polarization free energy of solvation -29.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds