Wall clock time and date at job start Tue Mar 31 2020 05:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47242 * 2 1 4 4 C 1.38152 * 120.02700 * 264.97464 * 3 2 1 5 5 C 1.38257 * 120.05891 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.11384 * 0.02562 * 5 4 3 7 7 C 1.38113 * 120.06450 * 359.67944 * 6 5 4 8 8 C 1.38750 * 120.02783 * 84.99852 * 3 2 1 9 9 O 1.35861 * 120.06336 * 359.97438 * 8 3 2 10 10 C 1.36121 * 117.99852 * 87.22165 * 9 8 3 11 11 C 1.34807 * 120.22067 * 354.97336 * 10 9 8 12 12 O 1.33949 * 122.73751 * 179.97438 * 11 10 9 13 13 C 1.34838 * 122.41235 * 359.97438 * 12 11 10 14 14 C 1.38771 * 120.94066 * 179.97438 * 13 12 11 15 15 C 1.38595 * 119.72712 * 180.02562 * 14 13 12 16 16 O 1.35618 * 119.72021 * 180.02562 * 15 14 13 17 17 C 1.34818 * 116.99607 * 5.89502 * 16 15 14 18 18 H 1.07991 * 120.00261 * 354.91046 * 17 16 15 19 19 C 1.38698 * 119.99495 * 174.91154 * 17 16 15 20 20 N 1.31524 * 120.00042 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99917 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47463 * 59.99800 * 21 19 17 23 23 H 1.48493 * 109.47328 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47060 * 299.99865 * 21 19 17 25 25 C 1.39479 * 120.56118 * 359.97438 * 15 14 13 26 26 C 1.36514 * 120.37259 * 0.02562 * 25 15 14 27 27 C 1.39618 * 119.74420 * 359.77227 * 26 25 15 28 28 C 1.42387 * 120.22335 * 174.94807 * 10 9 8 29 29 O 1.21973 * 121.38972 * 0.02562 * 28 10 9 30 30 H 1.08992 * 109.47545 * 300.00514 * 1 2 3 31 31 H 1.09008 * 109.46677 * 60.00601 * 1 2 3 32 32 H 1.09005 * 109.47498 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47643 * 239.99267 * 2 1 3 34 34 H 1.09008 * 109.47033 * 120.00090 * 2 1 3 35 35 H 1.08002 * 119.97309 * 0.03913 * 4 3 2 36 36 H 1.07997 * 119.94181 * 180.02562 * 5 4 3 37 37 H 1.08002 * 119.96682 * 179.97438 * 6 5 4 38 38 H 1.08000 * 120.03448 * 180.31935 * 7 6 5 39 39 H 1.08000 * 118.63166 * 359.97438 * 11 10 9 40 40 H 1.07996 * 120.13487 * 0.04998 * 14 13 12 41 41 H 0.97008 * 119.99818 * 179.97438 * 20 19 17 42 42 H 1.07997 * 119.81724 * 180.02562 * 25 15 14 43 43 H 1.07994 * 120.13197 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3615 2.0377 -1.1915 5 6 2.8230 3.3410 -1.1922 6 6 2.9568 4.0303 -0.0008 7 6 2.6233 3.4205 1.1926 8 6 2.1650 2.1103 1.1967 9 8 1.8419 1.5061 2.3698 10 6 2.8028 0.7743 2.9976 11 6 3.9999 0.5793 2.4092 12 8 4.9810 -0.1311 2.9811 13 6 4.8448 -0.7064 4.1930 14 6 5.8816 -1.4365 4.7567 15 6 5.7141 -2.0176 6.0038 16 8 6.7275 -2.7307 6.5548 17 6 7.9039 -2.7318 5.8961 18 1 7.9839 -2.2500 4.9330 19 6 9.0112 -3.3519 6.4555 20 7 8.9138 -3.9384 7.6287 21 14 10.6413 -3.3529 5.5433 22 1 11.0866 -1.9533 5.3237 23 1 11.6584 -4.0760 6.3480 24 1 10.4746 -4.0307 4.2326 25 6 4.5125 -1.8743 6.6974 26 6 3.4838 -1.1589 6.1555 27 6 3.6386 -0.5640 4.9020 28 6 2.5505 0.2102 4.2804 29 8 1.4796 0.3656 4.8433 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5140 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 2.2582 1.5014 -2.1233 36 1 3.0794 3.8215 -2.1248 37 1 3.3178 5.0482 -0.0041 38 1 2.7230 3.9610 2.1223 39 1 4.1752 1.0139 1.4362 40 1 6.8151 -1.5512 4.2260 41 1 9.6883 -4.3724 8.0198 42 1 4.3952 -2.3319 7.6686 43 1 2.5553 -1.0501 6.6961 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001916184.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:12 Heat of formation + Delta-G solvation = -50.983466 kcal Electronic energy + Delta-G solvation = -29994.255681 eV Core-core repulsion = 25744.206452 eV Total energy + Delta-G solvation = -4250.049229 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.119 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.70129 -40.54010 -38.95569 -38.49238 -37.63931 -36.00292 -34.36939 -32.64815 -31.80677 -30.63135 -30.18497 -29.46889 -28.98498 -25.96210 -24.69198 -24.12750 -23.25698 -22.87746 -21.81915 -21.16065 -19.45914 -19.08517 -18.14948 -17.50594 -16.89187 -16.70039 -16.28916 -15.77699 -15.67932 -15.27549 -15.09574 -14.63517 -14.44885 -14.27859 -14.07238 -14.04124 -13.91361 -13.77580 -13.48387 -13.38172 -12.99583 -12.87594 -12.67816 -12.27003 -12.12193 -11.95424 -11.86709 -11.67306 -11.41248 -11.12899 -11.05706 -10.93831 -10.83829 -10.65207 -9.81089 -9.49342 -9.19695 -9.14431 -8.93769 -8.87843 -7.80444 -7.66776 -6.79849 -4.36328 0.77322 0.93440 0.99081 1.46021 2.08818 2.67349 2.96904 2.97637 3.00275 3.02112 3.32520 3.47533 3.71719 4.30867 4.38361 4.42683 4.50103 4.70838 4.72700 4.76562 4.86224 4.88924 5.02281 5.08838 5.16870 5.21867 5.26470 5.28762 5.49566 5.64767 5.67232 5.73537 5.80747 5.82066 5.98697 6.03290 6.07531 6.10441 6.12880 6.23008 6.35925 6.45590 6.51076 6.75727 6.89864 7.06653 7.20040 7.38661 7.63913 7.67551 7.99946 8.63599 9.24909 10.35348 Molecular weight = 352.12amu Principal moments of inertia in cm(-1) A = 0.014360 B = 0.002586 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.326592 B =10823.316464 C =11863.698132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.090 4.090 4 C -0.108 4.108 5 C -0.115 4.115 6 C -0.113 4.113 7 C -0.121 4.121 8 C 0.073 3.927 9 O -0.229 6.229 10 C -0.079 4.079 11 C 0.026 3.974 12 O -0.214 6.214 13 C 0.191 3.809 14 C -0.269 4.269 15 C 0.197 3.803 16 O -0.145 6.145 17 C -0.395 4.395 18 H 0.102 0.898 19 C 0.045 3.955 20 N -0.843 5.843 21 Si 0.947 3.053 22 H -0.265 1.265 23 H -0.275 1.275 24 H -0.266 1.266 25 C -0.200 4.200 26 C 0.007 3.993 27 C -0.310 4.310 28 C 0.439 3.561 29 O -0.477 6.477 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.184 0.816 40 H 0.147 0.853 41 H 0.278 0.722 42 H 0.131 0.869 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.385 10.484 -16.181 21.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 C -0.090 4.090 4 C -0.126 4.126 5 C -0.133 4.133 6 C -0.131 4.131 7 C -0.139 4.139 8 C 0.031 3.969 9 O -0.142 6.142 10 C -0.123 4.123 11 C -0.040 4.040 12 O -0.119 6.119 13 C 0.146 3.854 14 C -0.289 4.289 15 C 0.138 3.862 16 O -0.044 6.044 17 C -0.470 4.470 18 H 0.119 0.881 19 C -0.163 4.163 20 N -0.474 5.474 21 Si 0.770 3.230 22 H -0.190 1.190 23 H -0.199 1.199 24 H -0.190 1.190 25 C -0.219 4.219 26 C -0.012 4.012 27 C -0.313 4.313 28 C 0.326 3.674 29 O -0.360 6.360 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.200 0.800 40 H 0.164 0.836 41 H 0.088 0.912 42 H 0.149 0.851 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.701 10.237 -15.508 20.518 hybrid contribution 0.829 0.236 -0.716 1.121 sum -7.871 10.474 -16.223 20.853 Atomic orbital electron populations 1.21695 0.94017 1.02041 1.02296 1.20545 0.96981 0.91744 1.03231 1.20338 0.99037 0.97142 0.92496 1.20995 0.99355 0.95128 0.97122 1.21253 0.99108 0.94600 0.98332 1.21067 0.99957 1.00275 0.91776 1.21477 0.98282 0.94587 0.99583 1.18703 1.01468 0.92025 0.84738 1.84559 1.34045 1.62591 1.33022 1.20879 0.90350 1.03656 0.97412 1.23468 0.87161 0.95635 0.97716 1.83062 1.39347 1.58048 1.31420 1.19020 0.93706 0.91432 0.81209 1.20173 1.00301 1.09701 0.98742 1.19135 0.89191 0.87853 0.89975 1.83958 1.18206 1.55868 1.46408 1.21543 0.84016 1.37753 1.03709 0.88105 1.25460 0.99465 0.95243 0.96093 1.70010 1.31907 1.30496 1.15011 0.85668 0.78938 0.79316 0.79034 1.19014 1.19934 1.19027 1.20051 0.92359 1.07313 1.02205 1.20226 0.97651 0.91472 0.91804 1.19741 0.95339 1.15306 1.00926 1.18092 0.87560 0.78598 0.83152 1.90687 1.25598 1.55295 1.64447 0.91923 0.92766 0.92169 0.90696 0.90666 0.85280 0.85473 0.85236 0.84934 0.79967 0.83598 0.91191 0.85066 0.84830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.89 37.15 0.37 -1.06 16 2 C -0.09 -0.91 5.79 -27.89 -0.16 -1.07 16 3 C -0.09 -0.95 4.60 -104.46 -0.48 -1.43 16 4 C -0.11 -0.91 9.68 -39.61 -0.38 -1.29 16 5 C -0.11 -0.87 10.04 -39.55 -0.40 -1.27 16 6 C -0.11 -0.94 10.04 -39.61 -0.40 -1.33 16 7 C -0.12 -1.29 9.99 -39.42 -0.39 -1.68 16 8 C 0.07 0.91 4.08 -39.19 -0.16 0.75 16 9 O -0.23 -3.59 9.21 -19.07 -0.18 -3.76 16 10 C -0.08 -1.30 5.77 -39.20 -0.23 -1.52 16 11 C 0.03 0.39 10.23 29.52 0.30 0.69 16 12 O -0.21 -3.62 9.74 5.17 0.05 -3.57 16 13 C 0.19 3.66 6.77 -38.48 -0.26 3.40 16 14 C -0.27 -5.55 9.12 -39.25 -0.36 -5.91 16 15 C 0.20 4.38 6.65 -38.99 -0.26 4.12 16 16 O -0.15 -3.75 9.74 0.49 0.00 -3.75 16 17 C -0.40 -10.01 9.48 30.90 0.29 -9.72 16 18 H 0.10 2.34 5.17 -52.49 -0.27 2.07 16 19 C 0.05 1.13 5.49 -17.51 -0.10 1.04 16 20 N -0.84 -22.58 13.67 55.48 0.76 -21.82 16 21 Si 0.95 18.64 29.55 -169.99 -5.02 13.61 16 22 H -0.27 -5.08 7.11 56.52 0.40 -4.67 16 23 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 24 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 25 C -0.20 -3.95 9.92 -39.74 -0.39 -4.34 16 26 C 0.01 0.13 9.61 -39.69 -0.38 -0.25 16 27 C -0.31 -5.98 5.89 -104.79 -0.62 -6.60 16 28 C 0.44 8.40 7.00 -34.30 -0.24 8.16 16 29 O -0.48 -10.11 17.22 -9.92 -0.17 -10.29 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.63 8.05 -51.93 -0.42 0.21 16 34 H 0.07 0.93 6.68 -51.92 -0.35 0.58 16 35 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.18 2.20 6.29 -52.49 -0.33 1.87 16 40 H 0.15 2.95 5.60 -52.49 -0.29 2.66 16 41 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 42 H 0.13 2.39 8.06 -52.49 -0.42 1.97 16 43 H 0.13 2.25 7.80 -52.49 -0.41 1.84 16 LS Contribution 373.12 15.07 5.62 5.62 Total: -1.00 -29.70 373.12 -7.76 -37.47 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -4.59 Total: 5.80 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -4.24 Total: -19.32 kcal Atomic # 7 Polarization: -22.58 SS G_CDS: 0.76 Total: -21.82 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.29 Total: -21.36 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.61 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.70 -7.76 -37.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001916184.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.515 kcal (2) G-P(sol) polarization free energy of solvation -29.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds