Wall clock time and date at job start Tue Mar 31 2020 05:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35911 * 116.99917 * 2 1 4 4 C 1.38811 * 119.93638 * 180.02562 * 3 2 1 5 5 C 1.37925 * 120.07233 * 180.02562 * 4 3 2 6 6 C 1.39391 * 119.93032 * 359.97306 * 5 4 3 7 7 C 1.48331 * 120.06626 * 180.02562 * 6 5 4 8 8 C 1.35805 * 120.64337 * 244.72045 * 7 6 5 9 9 C 1.50700 * 118.72062 * 0.02562 * 8 7 6 10 10 O 1.33559 * 122.55593 * 179.69662 * 8 7 6 11 11 C 1.34779 * 123.29267 * 0.61098 * 10 8 7 12 12 C 1.38849 * 120.56526 * 179.63964 * 11 10 8 13 13 C 1.38582 * 119.81288 * 179.97438 * 12 11 10 14 14 O 1.35609 * 119.70868 * 180.02562 * 13 12 11 15 15 C 1.34808 * 117.00234 * 354.45822 * 14 13 12 16 16 H 1.07998 * 119.99775 * 5.05574 * 15 14 13 17 17 C 1.38697 * 119.99725 * 185.05666 * 15 14 13 18 18 N 1.31520 * 120.00236 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99866 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47280 * 59.99804 * 19 17 15 21 21 H 1.48498 * 109.47260 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46828 * 300.00135 * 19 17 15 23 23 C 1.39464 * 120.57603 * 0.04972 * 13 12 11 24 24 C 1.36522 * 120.30647 * 359.97438 * 23 13 12 25 25 C 1.39599 * 119.76406 * 359.97384 * 24 23 13 26 26 C 1.47286 * 120.63902 * 65.00449 * 7 6 5 27 27 O 1.21904 * 121.61305 * 359.97438 * 26 7 6 28 28 C 1.39386 * 119.86127 * 0.02562 * 6 5 4 29 29 C 1.37928 * 119.93042 * 0.02562 * 28 6 5 30 30 H 1.09007 * 109.46641 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46767 * 299.99162 * 1 2 3 32 32 H 1.08993 * 109.47906 * 59.99995 * 1 2 3 33 33 H 1.08002 * 119.95808 * 359.97247 * 4 3 2 34 34 H 1.08003 * 120.03411 * 179.70036 * 5 4 3 35 35 H 1.09002 * 109.47708 * 89.99867 * 9 8 7 36 36 H 1.09003 * 109.47182 * 209.99397 * 9 8 7 37 37 H 1.08997 * 109.47532 * 329.99613 * 9 8 7 38 38 H 1.08003 * 120.09302 * 0.02562 * 12 11 10 39 39 H 0.96996 * 120.00125 * 179.97438 * 18 17 15 40 40 H 1.08010 * 119.84611 * 179.97438 * 23 13 12 41 41 H 1.07990 * 120.11491 * 180.02562 * 24 23 13 42 42 H 1.08001 * 120.03164 * 179.97438 * 28 6 5 43 43 H 1.08003 * 119.96448 * 180.02562 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4322 1.2821 -0.0005 5 6 4.0613 2.5095 0.0000 6 6 3.3035 3.6794 0.0005 7 6 3.9769 5.0011 0.0005 8 6 3.8469 5.8442 1.0572 9 6 3.0058 5.4108 2.2302 10 8 4.4408 7.0397 1.1001 11 6 5.2077 7.5210 0.1018 12 6 5.7926 8.7762 0.2031 13 6 6.5788 9.2556 -0.8326 14 8 7.1495 10.4816 -0.7312 15 6 6.8195 11.2232 0.3451 16 1 6.1942 10.8033 1.1190 17 6 7.2833 12.5254 0.4585 18 7 8.0453 13.0365 -0.4837 19 14 6.8267 13.5528 1.9504 20 1 7.3234 12.8866 3.1811 21 1 7.4433 14.8986 1.8321 22 1 5.3499 13.6902 2.0236 23 6 6.7878 8.4884 -1.9784 24 6 6.2192 7.2525 -2.0931 25 6 5.4256 6.7559 -1.0575 26 6 4.7943 5.4270 -1.1483 27 8 4.9428 4.7144 -2.1261 28 6 1.9116 3.6047 0.0010 29 6 1.2885 2.3742 0.0016 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 4.0188 0.3753 -0.0005 34 1 5.1399 2.5642 0.0045 35 1 3.6314 4.8847 2.9513 36 1 2.5640 6.2874 2.7040 37 1 2.2137 4.7470 1.8839 38 1 5.6360 9.3769 1.0869 39 1 8.3693 13.9474 -0.4045 40 1 7.4024 8.8738 -2.7786 41 1 6.3834 6.6609 -2.9815 42 1 1.3217 4.5094 0.0018 43 1 0.2101 2.3157 0.0015 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002249707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:58 Heat of formation + Delta-G solvation = -60.804560 kcal Electronic energy + Delta-G solvation = -29492.115622 eV Core-core repulsion = 25241.640518 eV Total energy + Delta-G solvation = -4250.475103 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.119 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.38277 -40.21057 -38.99142 -38.26173 -37.53325 -36.08127 -33.83055 -32.61601 -31.23394 -30.78722 -29.94652 -29.47682 -27.88445 -27.10384 -25.66488 -23.71336 -22.74153 -22.63976 -21.90262 -21.24037 -19.18755 -18.40833 -18.08458 -17.61815 -16.82698 -16.40106 -16.07780 -15.96029 -15.91708 -15.22952 -15.02281 -14.58952 -14.48419 -14.12840 -13.97981 -13.91337 -13.68976 -13.50981 -13.43654 -13.23696 -13.04263 -12.88116 -12.59197 -12.54502 -12.30870 -12.07196 -11.90423 -11.57084 -11.39401 -11.24776 -11.04253 -10.89302 -10.85496 -10.63571 -9.78466 -9.30239 -9.13961 -9.11121 -9.04897 -8.25996 -7.79021 -7.62870 -6.76778 -4.33814 0.96041 1.24261 1.28739 1.53902 2.12277 2.59957 2.97897 2.98694 3.02981 3.05265 3.35906 3.63098 3.73476 4.33821 4.37172 4.55021 4.61916 4.73193 4.78809 4.84108 4.85561 4.89244 5.00887 5.14436 5.15314 5.22858 5.26960 5.30788 5.38267 5.49681 5.55836 5.67574 5.79318 5.89313 5.92694 6.07336 6.12356 6.16867 6.32098 6.39399 6.52995 6.56184 6.61781 6.79007 6.97138 7.09297 7.19534 7.25439 7.67181 7.74656 8.13699 8.66750 9.28653 10.38649 Molecular weight = 352.12amu Principal moments of inertia in cm(-1) A = 0.023278 B = 0.002188 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.555648 B =12793.882064 C =13690.693149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.120 3.880 4 C -0.148 4.148 5 C -0.055 4.055 6 C -0.037 4.037 7 C -0.264 4.264 8 C 0.161 3.839 9 C -0.115 4.115 10 O -0.225 6.225 11 C 0.193 3.807 12 C -0.268 4.268 13 C 0.196 3.804 14 O -0.148 6.148 15 C -0.396 4.396 16 H 0.101 0.899 17 C 0.045 3.955 18 N -0.845 5.845 19 Si 0.947 3.053 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.266 1.266 23 C -0.201 4.201 24 C 0.004 3.996 25 C -0.313 4.313 26 C 0.437 3.563 27 O -0.489 6.489 28 C -0.075 4.075 29 C -0.207 4.207 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.146 0.854 39 H 0.277 0.723 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.126 0.874 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.127 -17.407 5.649 22.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.076 3.924 4 C -0.167 4.167 5 C -0.074 4.074 6 C -0.037 4.037 7 C -0.267 4.267 8 C 0.112 3.888 9 C -0.171 4.171 10 O -0.130 6.130 11 C 0.149 3.851 12 C -0.288 4.288 13 C 0.137 3.863 14 O -0.047 6.047 15 C -0.471 4.471 16 H 0.118 0.882 17 C -0.163 4.163 18 N -0.476 5.476 19 Si 0.770 3.230 20 H -0.191 1.191 21 H -0.200 1.200 22 H -0.191 1.191 23 C -0.220 4.220 24 C -0.015 4.015 25 C -0.316 4.316 26 C 0.324 3.676 27 O -0.373 6.373 28 C -0.093 4.093 29 C -0.225 4.225 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.117 0.883 38 H 0.163 0.837 39 H 0.087 0.913 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.144 0.856 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.683 -17.409 5.145 22.145 hybrid contribution -0.444 0.684 0.591 1.007 sum -13.127 -16.725 5.736 22.021 Atomic orbital electron populations 1.23035 0.78576 1.03777 1.01366 1.86061 1.21249 1.27138 1.88887 1.19053 0.92310 0.83999 0.97072 1.20331 0.91253 0.98485 1.06600 1.21011 1.00003 0.90475 0.95867 1.18017 0.92159 0.90851 1.02711 1.20893 1.10556 0.96907 0.98311 1.22139 0.89708 0.81623 0.95298 1.21093 0.98937 1.02852 0.94236 1.82744 1.55569 1.31581 1.43060 1.18912 0.89201 0.92430 0.84605 1.20233 1.09186 0.95515 1.03815 1.19119 0.88822 0.86527 0.91792 1.83959 1.56186 1.21177 1.43420 1.21504 1.33170 0.94432 0.97987 0.88218 1.25446 0.95629 0.96049 0.99166 1.70005 1.29389 1.16049 1.32169 0.85678 0.79309 0.78528 0.79464 1.19071 1.19965 1.19080 1.20069 1.08058 0.95612 0.98298 1.20271 0.91463 0.93493 0.96273 1.20002 1.13888 0.99051 0.98621 1.19574 0.77726 0.85221 0.85097 1.90624 1.57874 1.55902 1.32867 1.20998 0.93515 0.97065 0.97717 1.21092 0.99821 0.92099 1.09507 0.88389 0.92689 0.92655 0.85161 0.85333 0.88883 0.89559 0.88279 0.83686 0.91264 0.85206 0.85010 0.85641 0.85449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.31 10.49 -19.46 -0.20 -3.51 16 3 C 0.12 1.37 6.69 -39.16 -0.26 1.11 16 4 C -0.15 -1.76 9.97 -39.48 -0.39 -2.15 16 5 C -0.06 -0.73 9.69 -39.27 -0.38 -1.11 16 6 C -0.04 -0.51 4.35 -104.89 -0.46 -0.96 16 7 C -0.26 -4.12 5.45 -102.94 -0.56 -4.68 16 8 C 0.16 2.27 6.96 -35.18 -0.25 2.02 16 9 C -0.12 -1.09 9.72 36.01 0.35 -0.74 16 10 O -0.22 -3.75 9.59 6.33 0.06 -3.69 16 11 C 0.19 3.71 6.77 -38.47 -0.26 3.45 16 12 C -0.27 -5.58 9.11 -39.23 -0.36 -5.93 16 13 C 0.20 4.42 6.65 -39.00 -0.26 4.16 16 14 O -0.15 -3.87 9.74 0.54 0.01 -3.86 16 15 C -0.40 -10.13 9.48 30.90 0.29 -9.84 16 16 H 0.10 2.33 5.17 -52.49 -0.27 2.06 16 17 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 18 N -0.84 -22.83 13.67 55.48 0.76 -22.07 16 19 Si 0.95 18.79 29.55 -169.99 -5.02 13.77 16 20 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 23 C -0.20 -4.06 9.92 -39.74 -0.39 -4.45 16 24 C 0.00 0.07 9.61 -39.69 -0.38 -0.31 16 25 C -0.31 -6.10 5.89 -104.77 -0.62 -6.72 16 26 C 0.44 8.26 7.15 -32.18 -0.23 8.03 16 27 O -0.49 -10.19 16.99 5.01 0.09 -10.10 16 28 C -0.07 -0.86 7.70 -39.27 -0.30 -1.17 16 29 C -0.21 -2.14 9.02 -39.48 -0.36 -2.49 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.28 7.65 -51.93 -0.40 -0.12 16 32 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 33 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 34 H 0.13 1.67 8.06 -52.48 -0.42 1.24 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 0.83 5.06 -51.93 -0.26 0.57 16 38 H 0.15 2.96 5.59 -52.48 -0.29 2.66 16 39 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.13 2.43 8.06 -52.48 -0.42 2.01 16 41 H 0.13 2.29 7.80 -52.49 -0.41 1.89 16 42 H 0.13 1.26 7.82 -52.49 -0.41 0.84 16 43 H 0.13 0.99 6.28 -52.48 -0.33 0.66 16 LS Contribution 370.75 15.07 5.59 5.59 Total: -1.00 -31.00 370.75 -7.09 -38.09 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -4.44 Total: 5.38 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -3.92 Total: -19.59 kcal Atomic # 7 Polarization: -22.83 SS G_CDS: 0.76 Total: -22.07 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.05 Total: -21.17 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.77 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.00 -7.09 -38.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002249707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.715 kcal (2) G-P(sol) polarization free energy of solvation -30.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds