Wall clock time and date at job start Tue Mar 31 2020 05:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31528 * 1 3 3 Si 1.86802 * 120.00284 * 2 1 4 4 H 1.48503 * 109.46974 * 270.00572 * 3 2 1 5 5 H 1.48499 * 109.46814 * 30.00318 * 3 2 1 6 6 H 1.48497 * 109.47350 * 150.00568 * 3 2 1 7 7 C 1.38819 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00184 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99969 * 179.97438 * 7 2 1 10 10 C 1.76195 * 100.00274 * 179.97438 * 9 7 2 11 11 N 1.32973 * 120.00522 * 179.97438 * 10 9 7 12 12 C 1.32918 * 119.99864 * 179.97438 * 11 10 9 13 13 N 1.38018 * 120.00063 * 179.97438 * 12 11 10 14 14 C 1.47016 * 111.00216 * 0.02562 * 13 12 11 15 15 C 1.53096 * 109.25942 * 177.60838 * 14 13 12 16 16 O 1.43012 * 109.25705 * 56.84534 * 15 14 13 17 17 C 1.43012 * 113.74365 * 301.32719 * 16 15 14 18 18 C 1.47010 * 111.00073 * 236.35979 * 13 12 11 19 19 N 1.32960 * 120.00069 * 0.25322 * 12 11 10 20 20 C 1.32952 * 120.00666 * 359.49236 * 19 12 11 21 21 N 1.38022 * 119.99829 * 180.24927 * 20 19 12 22 22 C 1.47006 * 111.00547 * 303.89321 * 21 20 19 23 23 C 1.53095 * 109.26178 * 177.60534 * 22 21 20 24 24 O 1.43023 * 109.25677 * 56.85212 * 23 22 21 25 25 C 1.43017 * 113.73601 * 301.32980 * 24 23 22 26 26 C 1.47018 * 110.99869 * 180.25356 * 21 20 19 27 27 N 1.32920 * 120.00031 * 0.50794 * 20 19 12 28 28 H 0.97006 * 120.00232 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.50851 * 57.66515 * 14 13 12 30 30 H 1.09004 * 109.50278 * 297.54278 * 14 13 12 31 31 H 1.09001 * 109.50487 * 176.77808 * 15 14 13 32 32 H 1.08996 * 109.50808 * 296.86767 * 15 14 13 33 33 H 1.08995 * 109.51360 * 178.60952 * 17 16 15 34 34 H 1.09007 * 109.50262 * 298.74161 * 17 16 15 35 35 H 1.09008 * 109.50529 * 62.46094 * 18 13 12 36 36 H 1.08992 * 109.54732 * 302.35003 * 18 13 12 37 37 H 1.09004 * 109.50490 * 297.54580 * 22 21 20 38 38 H 1.09001 * 109.50370 * 57.66746 * 22 21 20 39 39 H 1.08994 * 109.50662 * 296.91700 * 23 22 21 40 40 H 1.09000 * 109.51022 * 176.78015 * 23 22 21 41 41 H 1.09003 * 109.50798 * 298.73686 * 25 24 23 42 42 H 1.08994 * 109.54588 * 178.63056 * 25 24 23 43 43 H 1.08998 * 109.51122 * 302.33471 * 26 21 20 44 44 H 1.09005 * 109.50224 * 62.46390 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5470 1.4401 0.6999 7 6 2.0093 -1.2022 -0.0005 8 1 1.4693 -2.1376 -0.0005 9 16 3.7714 -1.2023 -0.0012 10 6 4.0774 -2.9375 -0.0010 11 7 5.3269 -3.3924 -0.0018 12 6 5.5575 -4.7014 -0.0011 13 7 6.8544 -5.1736 -0.0026 14 6 7.8191 -4.0642 -0.0042 15 6 9.2402 -4.6306 0.0545 16 8 9.4385 -5.5222 -1.0460 17 6 8.5165 -6.6150 -1.0750 18 6 7.0878 -6.0691 -1.1448 19 7 4.5390 -5.5559 -0.0046 20 6 3.2896 -5.1013 0.0014 21 7 2.2324 -5.9886 0.0030 22 6 2.3164 -6.9104 -1.1390 23 6 1.1611 -7.9122 -1.0654 24 8 -0.0791 -7.2006 -1.0342 25 6 -0.1951 -6.2941 0.0659 26 6 0.9465 -5.2759 0.0038 27 7 3.0587 -3.7923 0.0007 28 1 -0.4851 0.8401 0.0004 29 1 7.6444 -3.4286 0.8638 30 1 7.6982 -3.4781 -0.9154 31 1 9.9601 -3.8142 -0.0042 32 1 9.3782 -5.1710 0.9909 33 1 8.7129 -7.2339 -1.9505 34 1 8.6332 -7.2137 -0.1716 35 1 6.9551 -5.5155 -2.0744 36 1 6.3795 -6.8968 -1.1099 37 1 2.2494 -6.3452 -2.0687 38 1 3.2652 -7.4458 -1.1055 39 1 1.2582 -8.5140 -0.1619 40 1 1.1860 -8.5616 -1.9405 41 1 -0.1374 -6.8489 1.0024 42 1 -1.1509 -5.7731 0.0099 43 1 0.8953 -4.6182 0.8715 44 1 0.8576 -4.6846 -0.9076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002854896.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:21 Heat of formation + Delta-G solvation = 17.306197 kcal Electronic energy + Delta-G solvation = -29769.279295 eV Core-core repulsion = 25656.794871 eV Total energy + Delta-G solvation = -4112.484424 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 353.131 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.33255 -39.89525 -39.08551 -36.56918 -35.49908 -32.88898 -32.81361 -32.05137 -31.28651 -31.11137 -27.81122 -27.45132 -25.98121 -24.83667 -24.23147 -23.29055 -22.91233 -20.99500 -20.31260 -18.83036 -18.29704 -17.46337 -16.71357 -16.29255 -16.03320 -15.81764 -15.62226 -15.26154 -15.21219 -15.03251 -14.93192 -14.81958 -14.59647 -14.44487 -14.10010 -13.72205 -13.62123 -13.02292 -12.54946 -12.36533 -11.88186 -11.71898 -11.57942 -11.50214 -11.45161 -11.37747 -11.32995 -11.03201 -11.02318 -10.84107 -10.59636 -10.26239 -9.88221 -9.70412 -9.43787 -9.31720 -9.16421 -8.92176 -8.63851 -8.45560 -7.53997 -6.59430 -4.38863 1.34393 1.43272 2.20653 2.93258 3.04733 3.12851 3.17348 3.44217 3.66934 3.84799 3.96095 4.07287 4.17005 4.55061 4.68493 4.79666 4.80203 4.83458 4.93851 4.95643 4.99315 5.08166 5.10037 5.16153 5.22564 5.36839 5.39879 5.43511 5.46505 5.60749 5.63073 5.66832 5.76714 5.83417 5.94285 6.05671 6.28010 6.35404 6.47864 6.68530 6.90688 7.09653 7.19819 7.36913 7.45577 7.66083 8.50054 8.79445 8.81140 10.48188 Molecular weight = 353.13amu Principal moments of inertia in cm(-1) A = 0.007179 B = 0.004749 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3899.117735 B = 5894.229194 C = 9566.907373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.104 3.896 3 Si 0.840 3.160 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.237 1.237 7 C -0.539 4.539 8 H 0.127 0.873 9 S 0.122 5.878 10 C 0.360 3.640 11 N -0.606 5.606 12 C 0.552 3.448 13 N -0.456 5.456 14 C 0.033 3.967 15 C 0.063 3.937 16 O -0.385 6.385 17 C 0.066 3.934 18 C 0.033 3.967 19 N -0.611 5.611 20 C 0.554 3.446 21 N -0.456 5.456 22 C 0.033 3.967 23 C 0.066 3.934 24 O -0.385 6.385 25 C 0.064 3.936 26 C 0.034 3.966 27 N -0.585 5.585 28 H 0.277 0.723 29 H 0.101 0.899 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.104 0.896 37 H 0.052 0.948 38 H 0.102 0.898 39 H 0.062 0.938 40 H 0.102 0.898 41 H 0.059 0.941 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.968 -12.570 -1.640 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.108 4.108 3 Si 0.664 3.336 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.162 1.162 7 C -0.688 4.688 8 H 0.144 0.856 9 S 0.360 5.640 10 C -0.017 4.017 11 N -0.340 5.340 12 C 0.182 3.818 13 N -0.177 5.177 14 C -0.094 4.094 15 C -0.015 4.015 16 O -0.304 6.304 17 C -0.012 4.012 18 C -0.094 4.094 19 N -0.346 5.346 20 C 0.185 3.815 21 N -0.177 5.177 22 C -0.094 4.094 23 C -0.011 4.011 24 O -0.304 6.304 25 C -0.013 4.013 26 C -0.093 4.093 27 N -0.317 5.317 28 H 0.087 0.913 29 H 0.119 0.881 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.079 0.921 33 H 0.122 0.878 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.122 0.878 37 H 0.070 0.930 38 H 0.120 0.880 39 H 0.080 0.920 40 H 0.120 0.880 41 H 0.077 0.923 42 H 0.126 0.874 43 H 0.123 0.877 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.565 -11.977 -1.076 16.007 hybrid contribution -0.879 0.622 -0.509 1.191 sum 9.686 -11.355 -1.586 15.009 Atomic orbital electron populations 1.69848 1.05810 1.28275 1.44617 1.24740 0.94625 0.98521 0.92926 0.87041 0.81897 0.84201 0.80448 1.18515 1.18739 1.16164 1.22887 0.87578 0.99626 1.58704 0.85571 1.83159 1.10953 0.89457 1.80405 1.25518 0.84814 1.02361 0.89042 1.69070 1.23328 1.14458 1.27135 1.20680 0.89728 0.84940 0.86419 1.58440 0.99121 1.18870 1.41313 1.22736 0.90324 0.91680 1.04689 1.22793 0.95281 0.93520 0.89856 1.87989 1.55282 1.38456 1.48659 1.22707 0.86541 0.88954 1.02960 1.22839 0.99361 0.97214 0.90035 1.68027 0.98451 1.39285 1.28887 1.20857 0.88040 0.86887 0.85725 1.58441 1.01519 1.16830 1.40948 1.22826 1.01639 0.94798 0.90147 1.22680 0.82608 0.93111 1.02746 1.87996 1.36395 1.57010 1.48959 1.22807 0.98591 0.90427 0.89499 1.22768 0.85328 0.95803 1.05447 1.69497 1.35325 1.01778 1.25134 0.91255 0.88108 0.91670 0.87692 0.92121 0.87824 0.91833 0.93006 0.87797 0.93008 0.88022 0.91965 0.87973 0.92280 0.87447 0.87734 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.44 13.96 55.49 0.77 -22.67 16 2 C 0.10 2.74 5.50 -17.47 -0.10 2.65 16 3 Si 0.84 18.76 27.74 -169.99 -4.71 14.04 16 4 H -0.26 -5.74 7.11 56.52 0.40 -5.33 16 5 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.24 -5.08 6.74 56.52 0.38 -4.70 16 7 C -0.54 -14.38 9.81 30.95 0.30 -14.08 16 8 H 0.13 3.64 6.78 -52.49 -0.36 3.29 16 9 S 0.12 2.86 19.83 -107.50 -2.13 0.73 16 10 C 0.36 8.24 7.89 -90.11 -0.71 7.53 16 11 N -0.61 -12.60 8.84 -14.21 -0.13 -12.72 16 12 C 0.55 10.41 7.19 -322.22 -2.32 8.10 16 13 N -0.46 -6.93 4.78 -174.95 -0.84 -7.77 16 14 C 0.03 0.45 4.81 -3.71 -0.02 0.43 16 15 C 0.06 0.65 7.01 37.21 0.26 0.92 16 16 O -0.39 -4.45 10.83 -35.23 -0.38 -4.83 16 17 C 0.07 0.64 7.01 37.21 0.26 0.91 16 18 C 0.03 0.40 5.49 -3.71 -0.02 0.38 16 19 N -0.61 -11.70 9.20 -14.78 -0.14 -11.83 16 20 C 0.55 11.18 7.19 -322.22 -2.32 8.86 16 21 N -0.46 -7.85 4.78 -174.96 -0.84 -8.68 16 22 C 0.03 0.46 5.49 -3.72 -0.02 0.44 16 23 C 0.07 0.76 7.01 37.21 0.26 1.02 16 24 O -0.39 -5.41 10.83 -35.23 -0.38 -5.79 16 25 C 0.06 0.88 7.01 37.21 0.26 1.14 16 26 C 0.03 0.58 4.81 -3.71 -0.02 0.56 16 27 N -0.58 -13.31 6.97 -14.21 -0.10 -13.41 16 28 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.10 1.42 7.86 -51.93 -0.41 1.01 16 30 H 0.06 0.95 8.03 -51.93 -0.42 0.54 16 31 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 35 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 36 H 0.10 1.26 7.70 -51.93 -0.40 0.86 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 1.33 7.70 -51.93 -0.40 0.93 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.10 1.98 7.86 -51.93 -0.41 1.58 16 44 H 0.07 1.35 8.03 -51.93 -0.42 0.93 16 LS Contribution 368.59 15.07 5.55 5.55 Total: -1.00 -30.62 368.59 -13.67 -44.29 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.19 Total: 4.23 kcal Atomic # 6 Polarization: 23.02 SS G_CDS: -4.17 Total: 18.85 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -1.26 Total: -77.08 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -0.76 Total: -10.62 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -4.71 Total: 14.04 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -2.13 Total: 0.73 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.62 -13.67 -44.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002854896.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.595 kcal (2) G-P(sol) polarization free energy of solvation -30.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds