Wall clock time and date at job start Tue Mar 31 2020 05:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00073 * 2 1 4 4 H 1.48495 * 109.47162 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46675 * 299.99482 * 3 2 1 6 6 H 1.48500 * 109.47413 * 59.99243 * 3 2 1 7 7 C 1.37879 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99824 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00169 * 0.02562 * 7 2 1 10 10 S 1.80994 * 109.47164 * 179.97438 * 9 7 2 11 11 C 1.76200 * 100.00134 * 180.02562 * 10 9 7 12 12 N 1.31443 * 126.38199 * 0.02562 * 11 10 9 13 13 N 1.28503 * 110.08134 * 179.97438 * 12 11 10 14 14 C 1.31262 * 109.95876 * 359.97438 * 13 12 11 15 15 C 1.47844 * 126.46425 * 179.97438 * 14 13 12 16 16 C 1.40002 * 120.56001 * 213.93300 * 15 14 13 17 17 C 1.38356 * 118.29424 * 180.02562 * 16 15 14 18 18 C 1.38354 * 119.30332 * 359.97438 * 17 16 15 19 19 N 1.31905 * 121.08323 * 0.02562 * 18 17 16 20 20 C 1.31709 * 121.87518 * 359.65250 * 19 18 17 21 21 N 1.36559 * 126.38428 * 180.02562 * 11 10 9 22 22 C 1.46500 * 127.17325 * 359.97438 * 21 11 10 23 23 C 1.50708 * 109.47042 * 265.15945 * 22 21 11 24 24 C 1.38229 * 120.00106 * 269.72440 * 23 22 21 25 25 C 1.38236 * 120.00037 * 179.76688 * 24 23 22 26 26 C 1.38237 * 119.99495 * 0.50692 * 25 24 23 27 27 C 1.38233 * 120.00430 * 359.74893 * 26 25 24 28 28 C 1.38233 * 119.99623 * 90.00263 * 23 22 21 29 29 H 0.96999 * 120.00296 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47035 * 59.99743 * 9 7 2 31 31 H 1.09002 * 109.46925 * 300.00062 * 9 7 2 32 32 H 1.08004 * 120.85599 * 0.02562 * 16 15 14 33 33 H 1.08001 * 120.34759 * 180.02562 * 17 16 15 34 34 H 1.07995 * 119.45841 * 179.97438 * 18 17 16 35 35 H 1.08005 * 119.71872 * 180.33544 * 20 19 18 36 36 H 1.08999 * 109.47315 * 25.16241 * 22 21 11 37 37 H 1.09001 * 109.47337 * 145.16598 * 22 21 11 38 38 H 1.08000 * 120.00203 * 0.02562 * 24 23 22 39 39 H 1.07994 * 120.00045 * 180.23081 * 25 24 23 40 40 H 1.08010 * 119.99283 * 179.71984 * 26 25 24 41 41 H 1.07996 * 119.99935 * 179.97438 * 27 26 25 42 42 H 1.07998 * 120.00102 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4272 -3.8749 0.0005 11 6 1.3071 -5.2351 -0.0002 12 7 -0.0054 -5.1643 -0.0011 13 7 -0.5110 -6.3457 -0.0020 14 6 0.4470 -7.2430 -0.0023 15 6 0.2755 -8.7115 -0.0028 16 6 1.1864 -9.5348 0.6700 17 6 0.9812 -10.9027 0.6386 18 6 -0.1074 -11.4085 -0.0495 19 7 -0.9496 -10.6085 -0.6745 20 6 -0.8005 -9.2999 -0.6684 21 7 1.6409 -6.5593 0.0000 22 6 2.9891 -7.1323 0.0004 23 6 3.4049 -7.4393 -1.4153 24 6 3.1340 -8.6798 -1.9616 25 6 3.5111 -8.9598 -3.2618 26 6 4.1684 -8.0026 -4.0120 27 6 4.4440 -6.7639 -3.4639 28 6 4.0623 -6.4823 -2.1655 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 2.0277 -9.1130 1.1998 33 1 1.6631 -11.5685 1.1465 34 1 -0.2697 -12.4758 -0.0760 35 1 -1.5142 -8.6773 -1.1874 36 1 3.6873 -6.4184 0.4374 37 1 2.9935 -8.0507 0.5875 38 1 2.6241 -9.4290 -1.3742 39 1 3.2962 -9.9277 -3.6899 40 1 4.4670 -8.2230 -5.0263 41 1 4.9579 -6.0164 -4.0499 42 1 4.2775 -5.5145 -1.7372 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002864535.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:07 Heat of formation + Delta-G solvation = 139.031049 kcal Electronic energy + Delta-G solvation = -27413.904157 eV Core-core repulsion = 23679.432949 eV Total energy + Delta-G solvation = -3734.471208 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 352.105 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.60616 -40.21992 -39.42990 -35.44619 -33.30684 -33.23678 -32.21836 -31.46995 -31.08807 -29.47287 -28.54894 -26.95994 -24.40550 -24.07190 -23.16924 -22.81393 -22.20583 -21.76446 -20.82036 -17.98896 -17.44087 -17.12386 -16.73775 -16.45512 -16.02270 -15.87222 -15.59343 -15.26155 -15.16983 -14.69480 -14.16320 -14.11014 -13.82246 -13.58112 -13.39845 -13.16654 -12.86022 -12.59950 -12.46884 -12.41943 -12.17283 -11.64478 -11.42295 -11.25271 -10.98521 -10.88814 -10.64988 -10.51847 -10.18900 -10.12383 -9.96239 -9.77406 -9.67655 -9.31474 -9.11463 -9.07623 -8.96469 -8.62746 -6.96061 -6.23955 -4.32904 0.49185 0.89349 0.95834 1.21262 1.71574 1.99685 2.72874 3.06677 3.21319 3.27335 3.29417 3.38893 3.55877 3.61799 3.95995 4.16379 4.28967 4.31025 4.36431 4.47901 4.53936 4.69408 4.78864 4.80566 4.94634 5.05898 5.07938 5.12464 5.28747 5.33349 5.39282 5.51140 5.65698 5.69970 5.72995 5.83866 5.96365 6.14115 6.22247 6.31372 6.32019 6.35031 6.75836 6.80508 7.05993 7.17381 7.62792 7.65113 7.87594 8.67848 8.89550 9.31055 10.86296 Molecular weight = 352.11amu Principal moments of inertia in cm(-1) A = 0.012370 B = 0.003120 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.077808 B = 8971.683938 C =10574.585250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.528 4.528 8 H 0.068 0.932 9 C 0.079 3.921 10 S -0.052 6.052 11 C 0.192 3.808 12 N -0.286 5.286 13 N -0.260 5.260 14 C 0.193 3.807 15 C -0.044 4.044 16 C -0.073 4.073 17 C -0.168 4.168 18 C 0.102 3.898 19 N -0.477 5.477 20 C 0.141 3.859 21 N -0.460 5.460 22 C 0.143 3.857 23 C -0.117 4.117 24 C -0.099 4.099 25 C -0.125 4.125 26 C -0.109 4.109 27 C -0.119 4.119 28 C -0.088 4.088 29 H 0.268 0.732 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.159 0.841 35 H 0.167 0.833 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.127 0.873 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.233 -23.132 -2.315 25.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.134 4.134 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.568 4.568 8 H 0.086 0.914 9 C -0.068 4.068 10 S 0.178 5.822 11 C -0.180 4.180 12 N -0.130 5.130 13 N -0.101 5.101 14 C -0.074 4.074 15 C -0.049 4.049 16 C -0.101 4.101 17 C -0.188 4.188 18 C -0.056 4.056 19 N -0.185 5.185 20 C -0.018 4.018 21 N -0.154 5.154 22 C 0.021 3.979 23 C -0.118 4.118 24 C -0.118 4.118 25 C -0.143 4.143 26 C -0.127 4.127 27 C -0.137 4.137 28 C -0.106 4.106 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.154 0.846 33 H 0.159 0.841 34 H 0.176 0.824 35 H 0.184 0.816 36 H 0.130 0.870 37 H 0.121 0.879 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.145 0.855 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.156 -22.701 -2.738 24.277 hybrid contribution 1.019 0.708 0.489 1.334 sum 9.175 -21.994 -2.249 23.936 Atomic orbital electron populations 1.69988 1.06101 1.27478 1.48014 1.24939 0.94961 0.99175 0.94339 0.86295 0.79917 0.82506 0.77907 1.19424 1.20602 1.20594 1.20597 0.93259 0.88510 1.54401 0.91418 1.21376 0.93729 0.89035 1.02673 1.85362 1.11509 0.94488 1.90836 1.27525 0.97792 0.88459 1.04261 1.74904 1.03341 1.14054 1.20693 1.74315 1.24884 0.95071 1.15856 1.22455 0.82167 0.93512 1.09285 1.18466 0.98132 0.87432 1.00831 1.21766 0.98207 0.93723 0.96371 1.22045 0.99976 0.95190 1.01576 1.22928 0.90115 1.00251 0.92287 1.67788 1.28112 1.04608 1.17953 1.22987 0.94455 0.90568 0.93783 1.46528 1.07032 1.05179 1.56688 1.20944 0.80996 1.00866 0.95123 1.19846 1.01232 0.95074 0.95677 1.21049 0.98849 0.96093 0.95775 1.21097 0.99281 0.99639 0.94250 1.21245 0.98032 0.93692 0.99755 1.21217 1.00164 0.97001 0.95321 1.21293 0.96134 0.98847 0.94345 0.92258 0.92792 0.92792 0.84594 0.84146 0.82375 0.81634 0.87007 0.87942 0.86389 0.85998 0.85909 0.85475 0.84867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.45 13.29 55.43 0.74 -24.71 16 2 C 0.07 1.96 5.46 -17.82 -0.10 1.86 16 3 Si 0.91 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.21 9.13 -34.44 -0.31 -14.52 16 8 H 0.07 1.76 7.71 -52.49 -0.40 1.35 16 9 C 0.08 2.03 4.99 36.01 0.18 2.21 16 10 S -0.05 -1.04 21.62 -107.50 -2.32 -3.37 16 11 C 0.19 3.82 8.07 -88.19 -0.71 3.11 16 12 N -0.29 -6.47 11.59 30.71 0.36 -6.11 16 13 N -0.26 -5.29 12.19 32.59 0.40 -4.90 16 14 C 0.19 3.17 7.57 -153.76 -1.16 2.00 16 15 C -0.04 -0.56 5.68 -104.82 -0.60 -1.15 16 16 C -0.07 -0.68 7.41 -38.88 -0.29 -0.97 16 17 C -0.17 -1.21 10.10 -39.50 -0.40 -1.61 16 18 C 0.10 0.84 11.17 -17.48 -0.20 0.65 16 19 N -0.48 -5.45 10.35 -12.91 -0.13 -5.58 16 20 C 0.14 1.78 10.93 -17.12 -0.19 1.59 16 21 N -0.46 -7.32 2.82 -115.36 -0.33 -7.64 16 22 C 0.14 1.66 5.85 -5.19 -0.03 1.63 16 23 C -0.12 -1.37 5.46 -104.62 -0.57 -1.94 16 24 C -0.10 -1.05 9.70 -39.59 -0.38 -1.43 16 25 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 26 C -0.11 -1.06 10.05 -39.58 -0.40 -1.46 16 27 C -0.12 -1.29 10.05 -39.58 -0.40 -1.68 16 28 C -0.09 -1.06 9.70 -39.58 -0.38 -1.45 16 29 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 30 H 0.05 1.51 8.14 -51.92 -0.42 1.08 16 31 H 0.05 1.50 8.14 -51.92 -0.42 1.08 16 32 H 0.14 1.06 5.48 -52.48 -0.29 0.77 16 33 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 34 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.17 2.14 8.06 -52.48 -0.42 1.71 16 36 H 0.11 1.23 7.66 -51.93 -0.40 0.83 16 37 H 0.10 0.89 4.75 -51.93 -0.25 0.65 16 38 H 0.12 1.11 6.15 -52.49 -0.32 0.79 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 41 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 42 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 376.79 15.07 5.68 5.68 Total: -1.00 -32.91 376.79 -11.57 -44.48 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -4.60 Total: 1.29 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -6.33 Total: -14.77 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 1.03 Total: -48.94 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: -1.04 SS G_CDS: -2.32 Total: -3.37 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.91 -11.57 -44.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002864535.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.507 kcal (2) G-P(sol) polarization free energy of solvation -32.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds