Wall clock time and date at job start Tue Mar 31 2020 05:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38310 * 119.96917 * 2 1 4 4 C 1.38256 * 120.14025 * 180.25618 * 3 2 1 5 5 C 1.38141 * 120.06879 * 359.74434 * 4 3 2 6 6 C 1.38836 * 119.92909 * 0.02562 * 5 4 3 7 7 N 1.40055 * 120.06632 * 179.97438 * 6 5 4 8 8 C 1.36853 * 119.79710 * 269.74484 * 7 6 5 9 9 S 1.76202 * 118.47605 * 359.97438 * 8 7 6 10 10 C 1.76206 * 99.99574 * 179.97438 * 9 8 7 11 11 H 1.07996 * 120.00511 * 0.02562 * 10 9 8 12 12 C 1.38810 * 119.99420 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00515 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99479 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47421 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46826 * 120.00592 * 14 12 10 17 17 H 1.48505 * 109.47349 * 240.00138 * 14 12 10 18 18 N 1.30959 * 123.04146 * 179.69001 * 8 7 6 19 19 C 1.34759 * 121.65281 * 0.59360 * 18 8 7 20 20 C 1.39839 * 121.53524 * 179.73622 * 19 18 8 21 21 C 1.36605 * 119.81008 * 179.97438 * 20 19 18 22 22 C 1.38918 * 120.97758 * 359.97324 * 21 20 19 23 23 C 1.37780 * 120.59246 * 0.04634 * 22 21 20 24 24 C 1.39401 * 119.41052 * 359.95511 * 23 22 21 25 25 C 1.35343 * 119.79876 * 90.02096 * 7 6 5 26 26 O 1.21732 * 121.25323 * 0.02562 * 25 7 6 27 27 C 1.38090 * 119.96433 * 179.74766 * 2 1 3 28 28 C 1.50703 * 120.03428 * 0.02562 * 27 2 1 29 29 H 1.09004 * 109.46931 * 270.25153 * 1 2 3 30 30 H 1.09003 * 109.47014 * 30.25018 * 1 2 3 31 31 H 1.08991 * 109.47242 * 150.25486 * 1 2 3 32 32 H 1.07999 * 119.92635 * 0.02562 * 3 2 1 33 33 H 1.08003 * 119.96851 * 179.77492 * 4 3 2 34 34 H 1.08001 * 120.03167 * 180.02562 * 5 4 3 35 35 H 0.97006 * 120.00320 * 179.97438 * 13 12 10 36 36 H 1.07999 * 120.09660 * 359.95312 * 20 19 18 37 37 H 1.07998 * 119.50815 * 179.97438 * 21 20 19 38 38 H 1.08004 * 119.70272 * 180.02562 * 22 21 20 39 39 H 1.08002 * 120.29182 * 179.97438 * 23 22 21 40 40 H 1.09002 * 109.47152 * 269.72125 * 28 27 2 41 41 H 1.09001 * 109.46980 * 149.72225 * 28 27 2 42 42 H 1.09004 * 109.47113 * 29.72206 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1982 0.0000 4 6 3.5804 1.2023 -0.0053 5 6 4.2761 0.0089 -0.0054 6 6 3.5855 -1.1955 -0.0006 7 7 4.2880 -2.4072 -0.0011 8 6 4.6199 -3.0003 -1.1889 9 16 4.1430 -2.2050 -2.6872 10 6 4.7945 -3.3470 -3.8604 11 1 5.3118 -4.2326 -3.5222 12 6 4.6418 -3.1087 -5.2194 13 7 4.0115 -2.0305 -5.6313 14 14 5.3331 -4.3190 -6.4631 15 1 5.9926 -5.4411 -5.7482 16 1 4.2298 -4.8487 -7.3042 17 1 6.3259 -3.6295 -7.3258 18 7 5.2803 -4.1287 -1.2636 19 6 5.6709 -4.7940 -0.1587 20 6 6.3712 -6.0015 -0.2413 21 6 6.7506 -6.6461 0.9018 22 6 6.4518 -6.1198 2.1522 23 6 5.7628 -4.9322 2.2667 24 6 5.3657 -4.2572 1.1134 25 6 4.6295 -2.9872 1.1731 26 8 4.3373 -2.4760 2.2385 27 6 2.1967 -1.1963 0.0053 28 6 1.4431 -2.5014 0.0104 29 1 -0.3633 0.0045 1.0277 30 1 -0.3633 0.8878 -0.5177 31 1 -0.3633 -0.8922 -0.5098 32 1 1.6562 2.1325 0.0004 33 1 4.1171 2.1395 -0.0090 34 1 5.3561 0.0128 -0.0091 35 1 3.9051 -1.8638 -6.5810 36 1 6.6111 -6.4236 -1.2060 37 1 7.2909 -7.5786 0.8323 38 1 6.7621 -6.6465 3.0426 39 1 5.5327 -4.5276 3.2413 40 1 1.2654 -2.8143 1.0393 41 1 2.0303 -3.2620 -0.5043 42 1 0.4887 -2.3719 -0.5000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003352437.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:13 Heat of formation + Delta-G solvation = 37.433719 kcal Electronic energy + Delta-G solvation = -28400.382417 eV Core-core repulsion = 24629.212867 eV Total energy + Delta-G solvation = -3771.169550 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 352.099 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.33911 -39.35544 -37.83304 -36.79190 -34.12899 -33.26368 -32.88454 -31.20580 -30.41253 -29.44482 -27.42062 -26.28692 -25.88195 -24.44267 -24.19841 -21.57028 -21.45017 -20.79414 -19.06466 -18.35753 -17.76429 -17.06439 -16.32392 -15.80427 -15.28727 -15.15280 -15.08228 -14.69265 -14.49654 -14.12039 -13.97953 -13.66248 -13.46400 -13.16408 -12.89572 -12.88799 -12.69538 -12.56404 -12.14508 -11.76233 -11.71058 -11.70758 -11.54046 -11.31823 -11.27677 -11.22356 -11.19339 -10.85227 -10.39543 -9.74924 -9.66430 -9.50952 -9.30693 -9.03761 -8.81111 -8.45625 -8.40973 -8.06978 -6.93068 -6.68343 -4.42335 0.97558 1.25056 1.34145 1.51659 2.28795 2.70098 3.03873 3.05528 3.12359 3.16630 3.21369 3.77873 3.84777 4.44868 4.70825 4.79147 4.80420 4.89582 4.96162 5.08289 5.10712 5.17189 5.24138 5.27361 5.37842 5.54355 5.59393 5.61657 5.75734 5.77144 5.79450 5.85900 5.94205 5.97423 6.06056 6.32109 6.36956 6.45685 6.46833 6.57903 6.62175 6.71579 6.74745 6.76577 7.01664 7.14005 7.22047 7.39683 8.17887 8.26660 8.55167 8.84882 10.38336 Molecular weight = 352.10amu Principal moments of inertia in cm(-1) A = 0.006931 B = 0.006142 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4038.670968 B = 4558.030893 C = 7803.739536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.084 4.084 3 C -0.104 4.104 4 C -0.115 4.115 5 C -0.093 4.093 6 C 0.119 3.881 7 N -0.493 5.493 8 C 0.327 3.673 9 S 0.195 5.805 10 C -0.541 4.541 11 H 0.119 0.881 12 C 0.078 3.922 13 N -0.867 5.867 14 Si 0.933 3.067 15 H -0.262 1.262 16 H -0.276 1.276 17 H -0.276 1.276 18 N -0.540 5.540 19 C 0.204 3.796 20 C -0.135 4.135 21 C -0.067 4.067 22 C -0.179 4.179 23 C -0.029 4.029 24 C -0.236 4.236 25 C 0.559 3.441 26 O -0.524 6.524 27 C -0.054 4.054 28 C -0.120 4.120 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.277 0.723 36 H 0.132 0.868 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.126 0.874 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.472 0.964 9.302 9.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.084 4.084 3 C -0.122 4.122 4 C -0.133 4.133 5 C -0.112 4.112 6 C 0.029 3.971 7 N -0.215 5.215 8 C -0.036 4.036 9 S 0.441 5.559 10 C -0.690 4.690 11 H 0.137 0.863 12 C -0.133 4.133 13 N -0.500 5.500 14 Si 0.758 3.242 15 H -0.186 1.186 16 H -0.202 1.202 17 H -0.202 1.202 18 N -0.269 5.269 19 C 0.083 3.917 20 C -0.157 4.157 21 C -0.087 4.087 22 C -0.200 4.200 23 C -0.048 4.048 24 C -0.245 4.245 25 C 0.352 3.648 26 O -0.400 6.400 27 C -0.055 4.055 28 C -0.176 4.176 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.087 0.913 36 H 0.150 0.850 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.144 0.856 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.146 2.118 8.716 9.505 hybrid contribution 1.086 -1.494 0.150 1.853 sum -2.060 0.624 8.865 9.123 Atomic orbital electron populations 1.20833 0.90895 1.03133 1.02182 1.19572 0.96105 0.91911 1.00833 1.21047 0.94156 0.97358 0.99683 1.20908 0.94177 0.97302 1.00935 1.21135 1.00178 0.91318 0.98574 1.17377 0.90315 0.84466 1.04919 1.43966 1.50520 1.20584 1.06479 1.26486 0.92424 0.92481 0.92221 1.83941 1.59614 1.25562 0.86832 1.23738 1.42325 1.11686 0.91229 0.86326 1.25211 0.93961 0.96164 0.97977 1.69914 1.37975 1.24990 1.17149 0.85856 0.78815 0.80206 0.79326 1.18621 1.20202 1.20195 1.69122 1.22401 1.08205 1.27154 1.18929 0.91801 0.93441 0.87525 1.20526 1.01423 0.94600 0.99158 1.20861 0.96903 0.98730 0.92218 1.20873 1.04207 0.97473 0.97450 1.20855 0.93536 0.93395 0.97023 1.20418 1.10408 0.97994 0.95706 1.18454 0.78922 0.84777 0.82602 1.90786 1.55525 1.65615 1.28066 1.19743 0.91842 0.95831 0.98114 1.20860 1.00375 0.94175 1.02217 0.91267 0.91407 0.90929 0.85696 0.85388 0.85803 0.91256 0.85024 0.85955 0.86097 0.85575 0.91145 0.91572 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 9.60 36.00 0.35 -0.90 16 2 C -0.08 -1.20 5.88 -104.65 -0.62 -1.82 16 3 C -0.10 -1.38 9.70 -39.55 -0.38 -1.76 16 4 C -0.11 -1.61 10.04 -39.61 -0.40 -2.01 16 5 C -0.09 -1.58 9.97 -39.40 -0.39 -1.97 16 6 C 0.12 2.25 3.10 -83.64 -0.26 1.99 16 7 N -0.49 -10.13 1.81 -61.26 -0.11 -10.24 16 8 C 0.33 7.26 7.09 -88.32 -0.63 6.63 16 9 S 0.19 4.59 20.32 -107.50 -2.18 2.40 16 10 C -0.54 -13.99 9.23 30.94 0.29 -13.70 16 11 H 0.12 3.12 6.48 -52.49 -0.34 2.78 16 12 C 0.08 1.97 5.49 -17.48 -0.10 1.87 16 13 N -0.87 -22.68 13.22 55.49 0.73 -21.95 16 14 Si 0.93 19.79 29.55 -169.99 -5.02 14.77 16 15 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 16 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 17 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 18 N -0.54 -12.21 8.28 -10.84 -0.09 -12.30 16 19 C 0.20 4.12 6.62 -84.78 -0.56 3.56 16 20 C -0.14 -2.31 9.98 -39.57 -0.40 -2.71 16 21 C -0.07 -0.94 9.95 -39.92 -0.40 -1.34 16 22 C -0.18 -2.49 10.02 -39.50 -0.40 -2.89 16 23 C -0.03 -0.47 9.68 -39.32 -0.38 -0.85 16 24 C -0.24 -4.62 5.90 -104.74 -0.62 -5.24 16 25 C 0.56 11.67 7.63 -12.49 -0.10 11.58 16 26 O -0.52 -11.49 16.69 5.16 0.09 -11.40 16 27 C -0.05 -0.92 5.90 -104.44 -0.62 -1.53 16 28 C -0.12 -1.92 9.36 36.01 0.34 -1.58 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 31 H 0.07 0.78 5.94 -51.93 -0.31 0.47 16 32 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 33 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 34 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 35 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 36 H 0.13 2.14 8.06 -52.49 -0.42 1.72 16 37 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 39 H 0.13 1.94 7.82 -52.49 -0.41 1.53 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.07 1.21 6.91 -51.93 -0.36 0.85 16 42 H 0.08 1.06 5.93 -51.93 -0.31 0.75 16 LS Contribution 370.41 15.07 5.58 5.58 Total: -1.00 -29.90 370.41 -10.93 -40.83 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -4.66 Total: 4.98 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -5.26 Total: -12.68 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.53 Total: -44.49 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Atomic # 16 Polarization: 4.59 SS G_CDS: -2.18 Total: 2.40 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.90 -10.93 -40.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003352437.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.263 kcal (2) G-P(sol) polarization free energy of solvation -29.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds