Wall clock time and date at job start Tue Mar 31 2020 05:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35991 * 117.00457 * 2 1 4 4 C 1.38308 * 120.00900 * 0.26457 * 3 2 1 5 5 C 1.39433 * 119.87096 * 180.29545 * 4 3 2 6 6 C 1.48222 * 120.05508 * 179.71795 * 5 4 3 7 7 N 1.31327 * 126.53320 * 325.00563 * 6 5 4 8 8 N 1.39737 * 109.18551 * 180.13981 * 7 6 5 9 9 C 1.46506 * 125.11191 * 179.87117 * 8 7 6 10 10 C 1.50699 * 109.46928 * 304.69507 * 9 8 7 11 11 H 1.08003 * 119.99963 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99865 * 179.97438 * 10 9 8 13 13 N 1.31522 * 119.99749 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 120.00236 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47160 * 89.99730 * 14 12 10 16 16 H 1.48503 * 109.47061 * 209.99752 * 14 12 10 17 17 H 1.48500 * 109.46598 * 329.99398 * 14 12 10 18 18 C 1.33992 * 109.78232 * 359.60659 * 8 7 6 19 19 C 1.38419 * 107.83240 * 0.22570 * 18 8 7 20 20 C 1.46469 * 126.86495 * 179.97438 * 19 18 8 21 21 O 1.21339 * 119.99901 * 180.02562 * 20 19 18 22 22 C 1.39430 * 119.89136 * 359.43662 * 5 4 3 23 23 C 1.37979 * 120.01670 * 0.28402 * 22 5 4 24 24 C 1.38681 * 120.13189 * 359.97438 * 23 22 5 25 25 O 1.35957 * 119.94635 * 180.02562 * 24 23 22 26 26 C 1.42900 * 117.00060 * 0.02562 * 25 24 23 27 27 F 1.39896 * 109.46950 * 299.99762 * 26 25 24 28 28 F 1.39900 * 109.47157 * 59.99631 * 26 25 24 29 29 H 1.09001 * 109.47096 * 300.00036 * 1 2 3 30 30 H 1.09004 * 109.46558 * 59.99662 * 1 2 3 31 31 H 1.08993 * 109.47433 * 179.97438 * 1 2 3 32 32 H 1.07999 * 120.06979 * 0.02952 * 4 3 2 33 33 H 1.09004 * 109.47073 * 64.69335 * 9 8 7 34 34 H 1.09000 * 109.47212 * 184.69417 * 9 8 7 35 35 H 0.97001 * 119.99269 * 180.02562 * 13 12 10 36 36 H 1.08004 * 126.08407 * 180.23024 * 18 8 7 37 37 H 1.07998 * 120.00242 * 0.03083 * 20 19 18 38 38 H 1.07994 * 119.99110 * 180.25461 * 22 5 4 39 39 H 1.08004 * 119.93365 * 180.02562 * 23 22 5 40 40 H 1.08995 * 109.47263 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 1.2935 2.3718 0.0055 5 6 1.9296 3.6125 -0.0007 6 6 1.1265 4.8584 -0.0011 7 7 -0.0260 5.0454 -0.6022 8 7 -0.4592 6.3531 -0.3680 9 6 -1.7036 6.9330 -0.8796 10 6 -1.7452 6.7895 -2.3792 11 1 -0.9269 6.3136 -2.8991 12 6 -2.8285 7.2648 -3.0873 13 7 -2.8646 7.1401 -4.3961 14 14 -4.2443 8.0873 -2.1881 15 1 -3.9855 9.5461 -2.0866 16 1 -5.5059 7.8594 -2.9376 17 1 -4.3669 7.5103 -0.8253 18 6 0.4316 6.9953 0.3996 19 6 1.4652 6.1168 0.6751 20 6 2.6586 6.3885 1.4797 21 8 3.4918 5.5213 1.6410 22 6 3.3222 3.6795 -0.0006 23 6 4.0690 2.5192 -0.0003 24 6 3.4373 1.2847 0.0005 25 8 4.1768 0.1438 0.0014 26 6 5.5981 0.2920 0.0020 27 9 5.9940 0.9957 -1.1405 28 9 5.9930 0.9969 1.1441 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2149 2.3168 0.0103 33 1 -2.5546 6.4118 -0.4410 34 1 -1.7483 7.9892 -0.6143 35 1 -3.6266 7.4749 -4.8943 36 1 0.3566 8.0167 0.7426 37 1 2.7968 7.3606 1.9294 38 1 3.8166 4.6396 -0.0013 39 1 5.1477 2.5726 0.0002 40 1 6.0660 -0.6924 0.0031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003395021.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:48 Heat of formation + Delta-G solvation = -102.788844 kcal Electronic energy + Delta-G solvation = -30571.571158 eV Core-core repulsion = 25797.338701 eV Total energy + Delta-G solvation = -4774.232457 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.107 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.45504 -47.44300 -40.81363 -40.21899 -38.34724 -38.22715 -36.85356 -33.86522 -32.29907 -30.72871 -30.15558 -29.91428 -27.95384 -27.12752 -26.19183 -23.82534 -23.41305 -22.46888 -21.69533 -20.28722 -19.48678 -19.20259 -18.17709 -18.01415 -17.34625 -17.06786 -16.62320 -16.30444 -15.77491 -15.65475 -15.39578 -14.90867 -14.69524 -14.50518 -14.36600 -14.17940 -14.00522 -13.94149 -13.74011 -13.71389 -13.38020 -13.06375 -12.77641 -12.66662 -12.59673 -12.30275 -11.98032 -11.92940 -11.49082 -11.23314 -11.09480 -11.00949 -10.92569 -10.43719 -10.35494 -9.83393 -9.30228 -9.20345 -8.91154 -8.57317 -8.17359 -7.63817 -6.37490 -4.42499 1.04893 1.49943 1.66660 2.48168 2.60528 2.95792 3.04785 3.09296 3.17118 3.25797 3.33968 3.42910 3.92249 4.08965 4.16182 4.44017 4.51695 4.80551 4.83271 4.90623 4.95791 5.02847 5.09757 5.22951 5.30602 5.46120 5.47811 5.55824 5.69669 5.75278 5.97909 6.03355 6.19553 6.34200 6.40327 6.54837 6.65243 6.78580 6.86213 7.10971 7.33725 7.44598 7.83732 8.08974 8.18503 8.70637 9.15173 10.74787 Molecular weight = 352.11amu Principal moments of inertia in cm(-1) A = 0.013754 B = 0.002779 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.218640 B =10072.456282 C =11077.287200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.104 3.896 4 C -0.146 4.146 5 C 0.007 3.993 6 C 0.136 3.864 7 N -0.257 5.257 8 N -0.308 5.308 9 C 0.223 3.777 10 C -0.542 4.542 11 H 0.087 0.913 12 C 0.080 3.920 13 N -0.881 5.881 14 Si 0.873 3.127 15 H -0.270 1.270 16 H -0.278 1.278 17 H -0.264 1.264 18 C 0.118 3.882 19 C -0.359 4.359 20 C 0.413 3.587 21 O -0.480 6.480 22 C -0.058 4.058 23 C -0.161 4.161 24 C 0.078 3.922 25 O -0.311 6.311 26 C 0.410 3.590 27 F -0.200 7.200 28 F -0.199 7.199 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.143 0.857 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.270 0.730 36 H 0.184 0.816 37 H 0.095 0.905 38 H 0.148 0.852 39 H 0.140 0.860 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.815 -8.902 12.104 19.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.224 6.224 3 C 0.059 3.941 4 C -0.166 4.166 5 C 0.004 3.996 6 C -0.031 4.031 7 N -0.077 5.077 8 N -0.083 5.083 9 C 0.104 3.896 10 C -0.580 4.580 11 H 0.105 0.895 12 C -0.125 4.125 13 N -0.518 5.518 14 Si 0.699 3.301 15 H -0.196 1.196 16 H -0.203 1.203 17 H -0.189 1.189 18 C -0.037 4.037 19 C -0.372 4.372 20 C 0.275 3.725 21 O -0.356 6.356 22 C -0.078 4.078 23 C -0.180 4.180 24 C 0.034 3.966 25 O -0.229 6.229 26 C 0.319 3.681 27 F -0.182 7.182 28 F -0.181 7.181 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.117 0.883 32 H 0.160 0.840 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.201 0.799 37 H 0.111 0.889 38 H 0.166 0.834 39 H 0.157 0.843 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 11.046 -10.105 11.194 18.693 hybrid contribution -0.561 1.517 0.660 1.747 sum 10.485 -8.588 11.854 18.006 Atomic orbital electron populations 1.23092 0.78266 1.03809 1.01847 1.86108 1.21272 1.25624 1.89357 1.17873 0.88426 0.85186 1.02627 1.21147 1.00393 0.90283 1.04744 1.17429 0.91881 0.88826 1.01425 1.21801 0.92697 0.92778 0.95843 1.77481 1.12429 0.96872 1.20883 1.48868 1.18069 1.07697 1.33707 1.20268 0.78249 0.93392 0.97665 1.21017 1.07848 1.41380 0.87777 0.89485 1.24821 0.97689 0.95176 0.94837 1.69867 1.30993 1.44923 1.05983 0.86916 0.82559 0.80365 0.80307 1.19576 1.20349 1.18894 1.23163 0.89555 0.98431 0.92532 1.22142 1.03127 0.95007 1.16927 1.22776 0.81974 0.91426 0.76352 1.90488 1.42971 1.48779 1.53379 1.21233 0.92031 0.98856 0.95668 1.21225 1.00691 0.90571 1.05474 1.18121 0.87995 0.85080 1.05410 1.86656 1.16529 1.30708 1.88974 1.23344 0.80617 0.92228 0.71889 1.93099 1.90643 1.82317 1.52096 1.93102 1.90665 1.82270 1.52094 0.92650 0.92183 0.88251 0.83977 0.93395 0.92944 0.91942 0.79881 0.88909 0.83424 0.84261 0.80490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 101.05 0.99 1.27 16 2 O -0.31 -4.56 10.27 -34.37 -0.35 -4.91 16 3 C 0.10 1.67 6.69 -39.17 -0.26 1.41 16 4 C -0.15 -2.43 8.74 -39.11 -0.34 -2.77 16 5 C 0.01 0.12 5.73 -104.91 -0.60 -0.48 16 6 C 0.14 2.59 6.94 -80.51 -0.56 2.03 16 7 N -0.26 -5.49 12.27 34.60 0.42 -5.07 16 8 N -0.31 -6.15 3.61 -61.94 -0.22 -6.37 16 9 C 0.22 4.73 5.27 -5.19 -0.03 4.70 16 10 C -0.54 -14.34 9.76 -34.44 -0.34 -14.68 16 11 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 12 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 13 N -0.88 -25.39 13.96 55.43 0.77 -24.61 16 14 Si 0.87 18.87 27.47 -169.99 -4.67 14.20 16 15 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.26 -5.34 6.54 56.52 0.37 -4.97 16 18 C 0.12 1.82 11.39 -16.54 -0.19 1.63 16 19 C -0.36 -5.76 6.26 -103.05 -0.64 -6.41 16 20 C 0.41 5.50 11.55 34.05 0.39 5.89 16 21 O -0.48 -7.70 13.26 5.51 0.07 -7.63 16 22 C -0.06 -0.98 7.77 -39.23 -0.30 -1.28 16 23 C -0.16 -2.49 8.24 -39.51 -0.33 -2.81 16 24 C 0.08 1.21 6.50 -39.03 -0.25 0.95 16 25 O -0.31 -4.14 10.21 -34.27 -0.35 -4.49 16 26 C 0.41 3.92 5.98 101.05 0.60 4.52 16 27 F -0.20 -2.24 15.57 2.25 0.04 -2.20 16 28 F -0.20 -2.22 15.58 2.25 0.04 -2.19 16 29 H 0.05 0.58 7.65 -51.93 -0.40 0.18 16 30 H 0.06 0.68 7.67 -51.93 -0.40 0.28 16 31 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.14 2.27 6.29 -52.49 -0.33 1.94 16 33 H 0.05 1.02 7.20 -51.93 -0.37 0.64 16 34 H 0.05 0.97 7.47 -51.93 -0.39 0.59 16 35 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.18 1.89 8.06 -52.48 -0.42 1.47 16 37 H 0.09 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.15 2.46 5.63 -52.49 -0.30 2.16 16 39 H 0.14 1.96 5.07 -52.48 -0.27 1.69 16 40 H 0.18 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 354.83 15.07 5.35 5.35 Total: -1.00 -34.07 354.83 -4.59 -38.67 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -3.73 Total: 3.27 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -1.95 Total: -4.00 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.97 Total: -36.05 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.63 Total: -17.03 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.07 Total: -4.39 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -4.67 Total: 14.20 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.07 -4.59 -38.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003395021.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.124 kcal (2) G-P(sol) polarization free energy of solvation -34.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds