Wall clock time and date at job start Tue Mar 31 2020 05:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35991 * 117.00457 * 2 1 4 4 C 1.38308 * 120.00900 * 0.26457 * 3 2 1 5 5 C 1.39433 * 119.87096 * 180.29545 * 4 3 2 6 6 C 1.48222 * 120.05508 * 179.71795 * 5 4 3 7 7 N 1.31327 * 126.53320 * 325.00563 * 6 5 4 8 8 N 1.39737 * 109.18551 * 180.13981 * 7 6 5 9 9 C 1.46506 * 125.11191 * 179.87117 * 8 7 6 10 10 C 1.50699 * 109.46928 * 304.69507 * 9 8 7 11 11 H 1.08003 * 119.99963 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99865 * 179.97438 * 10 9 8 13 13 N 1.31522 * 119.99749 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 120.00236 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47160 * 89.99730 * 14 12 10 16 16 H 1.48503 * 109.47061 * 209.99752 * 14 12 10 17 17 H 1.48500 * 109.46598 * 329.99398 * 14 12 10 18 18 C 1.33992 * 109.78232 * 359.60659 * 8 7 6 19 19 C 1.38419 * 107.83240 * 0.22570 * 18 8 7 20 20 C 1.46469 * 126.86495 * 179.97438 * 19 18 8 21 21 O 1.21339 * 119.99901 * 180.02562 * 20 19 18 22 22 C 1.39430 * 119.89136 * 359.43662 * 5 4 3 23 23 C 1.37979 * 120.01670 * 0.28402 * 22 5 4 24 24 C 1.38681 * 120.13189 * 359.97438 * 23 22 5 25 25 O 1.35957 * 119.94635 * 180.02562 * 24 23 22 26 26 C 1.42900 * 117.00060 * 0.02562 * 25 24 23 27 27 F 1.39896 * 109.46950 * 299.99762 * 26 25 24 28 28 F 1.39900 * 109.47157 * 59.99631 * 26 25 24 29 29 H 1.09001 * 109.47096 * 300.00036 * 1 2 3 30 30 H 1.09004 * 109.46558 * 59.99662 * 1 2 3 31 31 H 1.08993 * 109.47433 * 179.97438 * 1 2 3 32 32 H 1.07999 * 120.06979 * 0.02952 * 4 3 2 33 33 H 1.09004 * 109.47073 * 64.69335 * 9 8 7 34 34 H 1.09000 * 109.47212 * 184.69417 * 9 8 7 35 35 H 0.97001 * 119.99269 * 180.02562 * 13 12 10 36 36 H 1.08004 * 126.08407 * 180.23024 * 18 8 7 37 37 H 1.07998 * 120.00242 * 0.03083 * 20 19 18 38 38 H 1.07994 * 119.99110 * 180.25461 * 22 5 4 39 39 H 1.08004 * 119.93365 * 180.02562 * 23 22 5 40 40 H 1.08995 * 109.47263 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 1.2935 2.3718 0.0055 5 6 1.9296 3.6125 -0.0007 6 6 1.1265 4.8584 -0.0011 7 7 -0.0260 5.0454 -0.6022 8 7 -0.4592 6.3531 -0.3680 9 6 -1.7036 6.9330 -0.8796 10 6 -1.7452 6.7895 -2.3792 11 1 -0.9269 6.3136 -2.8991 12 6 -2.8285 7.2648 -3.0873 13 7 -2.8646 7.1401 -4.3961 14 14 -4.2443 8.0873 -2.1881 15 1 -3.9855 9.5461 -2.0866 16 1 -5.5059 7.8594 -2.9376 17 1 -4.3669 7.5103 -0.8253 18 6 0.4316 6.9953 0.3996 19 6 1.4652 6.1168 0.6751 20 6 2.6586 6.3885 1.4797 21 8 3.4918 5.5213 1.6410 22 6 3.3222 3.6795 -0.0006 23 6 4.0690 2.5192 -0.0003 24 6 3.4373 1.2847 0.0005 25 8 4.1768 0.1438 0.0014 26 6 5.5981 0.2920 0.0020 27 9 5.9940 0.9957 -1.1405 28 9 5.9930 0.9969 1.1441 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2149 2.3168 0.0103 33 1 -2.5546 6.4118 -0.4410 34 1 -1.7483 7.9892 -0.6143 35 1 -3.6266 7.4749 -4.8943 36 1 0.3566 8.0167 0.7426 37 1 2.7968 7.3606 1.9294 38 1 3.8166 4.6396 -0.0013 39 1 5.1477 2.5726 0.0002 40 1 6.0660 -0.6924 0.0031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003395021.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:47 Heat of formation + Delta-G solvation = -126.191743 kcal Electronic energy + Delta-G solvation = -30572.585984 eV Core-core repulsion = 25797.338701 eV Total energy + Delta-G solvation = -4775.247283 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.107 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.29004 -48.28588 -42.11348 -41.41976 -39.42480 -39.37873 -38.04144 -35.60990 -33.96203 -32.09652 -31.38368 -31.22211 -29.47076 -28.20863 -27.14741 -25.26124 -24.72733 -23.63787 -23.08818 -21.54236 -20.78660 -20.23541 -19.24199 -19.04195 -18.87063 -18.35855 -17.90870 -17.39722 -16.87535 -16.84040 -16.54732 -16.43811 -16.07393 -15.66054 -15.59357 -15.44397 -15.13983 -14.87431 -14.82617 -14.69667 -14.61414 -14.52191 -14.08853 -14.02691 -13.80809 -13.52448 -13.28178 -13.00295 -12.87373 -12.60481 -12.51563 -12.25562 -12.19410 -11.99762 -11.87691 -11.66747 -10.89614 -10.62328 -10.41836 -9.86230 -9.49826 -8.90068 -8.39628 -6.51747 -0.22275 0.23869 0.52061 1.25515 1.35805 1.38777 1.47781 1.57542 1.66071 2.16835 2.27276 2.28278 2.56063 2.64640 2.93071 3.25659 3.49569 3.59695 3.71491 3.72168 3.81417 3.91826 4.04954 4.20034 4.22997 4.30406 4.32171 4.41261 4.46594 4.61927 4.65437 4.74361 4.86268 5.00171 5.08364 5.19421 5.34193 5.36395 5.55393 5.65602 5.86787 6.25015 6.28453 6.54205 6.73283 6.84881 7.11460 8.77542 Molecular weight = 352.11amu Principal moments of inertia in cm(-1) A = 0.013754 B = 0.002779 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.218640 B =10072.456282 C =11077.287200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.317 6.317 3 C 0.097 3.903 4 C -0.153 4.153 5 C -0.018 4.018 6 C 0.123 3.877 7 N -0.316 5.316 8 N -0.336 5.336 9 C 0.230 3.770 10 C -0.551 4.551 11 H 0.023 0.977 12 C 0.014 3.986 13 N -0.943 5.943 14 Si 0.957 3.043 15 H -0.249 1.249 16 H -0.286 1.286 17 H -0.235 1.235 18 C 0.136 3.864 19 C -0.368 4.368 20 C 0.421 3.579 21 O -0.509 6.509 22 C -0.063 4.063 23 C -0.162 4.162 24 C 0.078 3.922 25 O -0.319 6.319 26 C 0.403 3.597 27 F -0.210 7.210 28 F -0.209 7.209 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.131 0.869 32 H 0.140 0.860 33 H 0.050 0.950 34 H 0.095 0.905 35 H 0.272 0.728 36 H 0.242 0.758 37 H 0.160 0.840 38 H 0.148 0.852 39 H 0.153 0.847 40 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.114 -7.716 14.978 20.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.231 6.231 3 C 0.051 3.949 4 C -0.173 4.173 5 C -0.020 4.020 6 C -0.045 4.045 7 N -0.136 5.136 8 N -0.112 5.112 9 C 0.111 3.889 10 C -0.589 4.589 11 H 0.042 0.958 12 C -0.185 4.185 13 N -0.581 5.581 14 Si 0.777 3.223 15 H -0.173 1.173 16 H -0.212 1.212 17 H -0.158 1.158 18 C -0.016 4.016 19 C -0.381 4.381 20 C 0.285 3.715 21 O -0.386 6.386 22 C -0.082 4.082 23 C -0.180 4.180 24 C 0.033 3.967 25 O -0.236 6.236 26 C 0.314 3.686 27 F -0.192 7.192 28 F -0.190 7.190 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.149 0.851 32 H 0.157 0.843 33 H 0.068 0.932 34 H 0.113 0.887 35 H 0.081 0.919 36 H 0.259 0.741 37 H 0.176 0.824 38 H 0.165 0.835 39 H 0.170 0.830 40 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 11.384 -8.926 14.099 20.200 hybrid contribution -0.487 1.006 -0.267 1.149 sum 10.897 -7.919 13.832 19.308 Atomic orbital electron populations 1.23341 0.76617 1.05854 1.01716 1.86093 1.22973 1.24924 1.89159 1.18008 0.89016 0.85392 1.02492 1.21175 1.00444 0.90532 1.05136 1.17626 0.92443 0.89041 1.02879 1.22249 0.92286 0.94351 0.95566 1.77381 1.14345 0.98699 1.23156 1.48722 1.18870 1.07804 1.35758 1.20089 0.79438 0.95610 0.93731 1.21184 1.06163 1.40531 0.91025 0.95846 1.25959 1.01166 0.95798 0.95543 1.70066 1.32415 1.47090 1.08539 0.85604 0.77024 0.79943 0.79700 1.17312 1.21161 1.15848 1.24076 0.87408 1.00154 0.90001 1.22727 1.04671 0.93797 1.16943 1.23543 0.79968 0.93064 0.74967 1.90490 1.43576 1.50359 1.54165 1.21262 0.91675 0.99336 0.95947 1.21360 1.01225 0.90278 1.05153 1.18238 0.88282 0.85852 1.04293 1.86659 1.18553 1.29771 1.88663 1.24371 0.78942 0.94321 0.70940 1.93077 1.90507 1.82882 1.52738 1.93081 1.90513 1.82813 1.52640 0.92146 0.92989 0.85081 0.84263 0.93226 0.88725 0.91868 0.74142 0.82436 0.83506 0.82991 0.74509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.81 113.37 1.11 1.54 16 2 O -0.32 -9.42 10.27 -79.43 -0.82 -10.23 16 3 C 0.10 3.18 6.69 22.53 0.15 3.33 16 4 C -0.15 -5.38 8.74 22.57 0.20 -5.19 16 5 C -0.02 -0.66 5.73 -20.05 -0.11 -0.77 16 6 C 0.12 4.82 6.94 44.12 0.31 5.13 16 7 N -0.32 -14.13 12.27 -44.44 -0.55 -14.68 16 8 N -0.34 -13.26 3.61 -349.89 -1.26 -14.52 16 9 C 0.23 9.53 5.27 85.63 0.45 9.98 16 10 C -0.55 -30.17 9.76 25.60 0.25 -29.92 16 11 H 0.02 1.53 8.06 -2.91 -0.02 1.51 16 12 C 0.01 0.78 5.47 84.65 0.46 1.24 16 13 N -0.94 -56.76 13.96 21.45 0.30 -56.46 16 14 Si 0.96 38.20 27.47 68.60 1.88 40.09 16 15 H -0.25 -9.08 7.11 99.48 0.71 -8.38 16 16 H -0.29 -11.69 7.11 99.48 0.71 -10.98 16 17 H -0.24 -8.25 6.54 99.48 0.65 -7.60 16 18 C 0.14 3.82 11.39 84.41 0.96 4.79 16 19 C -0.37 -11.31 6.26 -18.85 -0.12 -11.43 16 20 C 0.42 10.01 11.55 69.97 0.81 10.82 16 21 O -0.51 -15.58 13.26 -3.21 -0.04 -15.62 16 22 C -0.06 -2.16 7.77 22.50 0.17 -1.98 16 23 C -0.16 -5.05 8.24 22.31 0.18 -4.86 16 24 C 0.08 2.43 6.50 22.62 0.15 2.58 16 25 O -0.32 -8.18 10.21 -79.05 -0.81 -8.99 16 26 C 0.40 6.95 5.98 113.37 0.68 7.63 16 27 F -0.21 -4.46 15.57 44.97 0.70 -3.76 16 28 F -0.21 -4.34 15.58 44.97 0.70 -3.64 16 29 H 0.06 1.29 7.65 -2.39 -0.02 1.27 16 30 H 0.05 1.25 7.67 -2.38 -0.02 1.23 16 31 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.14 4.81 6.29 -2.91 -0.02 4.79 16 33 H 0.05 2.02 7.20 -2.38 -0.02 2.01 16 34 H 0.10 3.13 7.47 -2.39 -0.02 3.12 16 35 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 36 H 0.24 3.58 8.06 -2.91 -0.02 3.55 16 37 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 38 H 0.15 4.99 5.63 -2.91 -0.02 4.97 16 39 H 0.15 4.24 5.07 -2.91 -0.01 4.22 16 40 H 0.24 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -82.72 354.83 6.83 -75.90 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 1.06 Total: 19.04 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 5.65 Total: -7.12 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -1.51 Total: -85.65 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -1.67 Total: -34.84 kcal Atomic # 9 Polarization: -8.81 SS G_CDS: 1.40 Total: -7.40 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 1.88 Total: 40.09 kcal Total: -82.72 6.83 -75.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003395021.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.296 kcal (2) G-P(sol) polarization free energy of solvation -82.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds