Wall clock time and date at job start Tue Mar 31 2020 05:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86795 * 120.00022 * 2 1 4 4 H 1.48500 * 109.47200 * 274.98107 * 3 2 1 5 5 H 1.48497 * 109.47199 * 34.97723 * 3 2 1 6 6 H 1.48500 * 109.47513 * 154.98131 * 3 2 1 7 7 C 1.40127 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99458 * 173.82301 * 7 2 1 9 9 C 1.46192 * 120.00311 * 353.81537 * 7 2 1 10 10 O 1.21727 * 119.99676 * 6.08649 * 9 7 2 11 11 N 1.34777 * 120.00337 * 186.09017 * 9 7 2 12 12 C 1.39103 * 120.00270 * 185.12981 * 11 9 7 13 13 C 1.39253 * 119.93389 * 213.64722 * 12 11 9 14 14 C 1.37640 * 120.05784 * 180.25484 * 13 12 11 15 15 C 1.39773 * 119.93273 * 359.49225 * 14 13 12 16 16 C 1.47606 * 120.05859 * 180.27644 * 15 14 13 17 17 O 1.21581 * 119.99949 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00144 * 179.97438 * 16 15 14 19 19 C 1.46491 * 120.00018 * 180.02562 * 18 16 15 20 20 C 1.53004 * 109.47271 * 179.97438 * 19 18 16 21 21 C 1.52996 * 109.47260 * 179.97438 * 20 19 18 22 22 C 1.50697 * 109.47159 * 179.97438 * 21 20 19 23 23 C 1.38232 * 120.00205 * 269.72968 * 22 21 20 24 24 C 1.38237 * 120.00283 * 179.76656 * 23 22 21 25 25 C 1.38242 * 119.99725 * 0.50277 * 24 23 22 26 26 C 1.38234 * 119.99599 * 359.74922 * 25 24 23 27 27 C 1.38230 * 120.00658 * 359.97438 * 26 25 24 28 28 C 1.39779 * 119.88184 * 0.25279 * 15 14 13 29 29 C 1.37630 * 119.93338 * 0.02562 * 28 15 14 30 30 H 0.96994 * 119.99651 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99834 * 5.12287 * 11 9 7 32 32 H 1.07995 * 119.97632 * 0.02562 * 13 12 11 33 33 H 1.07994 * 120.02896 * 179.76834 * 14 13 12 34 34 H 0.97005 * 119.99410 * 359.97438 * 18 16 15 35 35 H 1.09003 * 109.47268 * 300.00109 * 19 18 16 36 36 H 1.09000 * 109.47691 * 60.00073 * 19 18 16 37 37 H 1.08996 * 109.46857 * 299.99926 * 20 19 18 38 38 H 1.08999 * 109.47119 * 59.99783 * 20 19 18 39 39 H 1.09003 * 109.47467 * 300.00253 * 21 20 19 40 40 H 1.08999 * 109.47037 * 59.99971 * 21 20 19 41 41 H 1.08001 * 120.00207 * 359.97438 * 23 22 21 42 42 H 1.07997 * 120.00634 * 180.23087 * 24 23 22 43 43 H 1.07995 * 120.00177 * 179.72727 * 25 24 23 44 44 H 1.08011 * 119.99435 * 179.97438 * 26 25 24 45 45 H 1.07998 * 120.00296 * 179.97438 * 27 26 25 46 46 H 1.08003 * 120.03287 * 180.02562 * 28 15 14 47 47 H 1.07994 * 119.96560 * 180.02562 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3827 2.1072 -1.3948 5 1 1.4945 2.6200 0.8026 6 1 3.5867 1.4121 0.5921 7 6 2.0070 -1.2136 0.0005 8 1 3.0824 -1.2163 -0.1001 9 6 1.2825 -2.4759 0.1375 10 8 0.0652 -2.4818 0.1396 11 7 1.9622 -3.6331 0.2615 12 6 1.2768 -4.8433 0.2844 13 6 1.7544 -5.8978 1.0585 14 6 1.0811 -7.0981 1.0790 15 6 -0.0888 -7.2545 0.3302 16 6 -0.8164 -8.5385 0.3550 17 8 -0.3984 -9.4612 1.0274 18 7 -1.9446 -8.6878 -0.3670 19 6 -2.6669 -9.9620 -0.3420 20 6 -3.9025 -9.8656 -1.2393 21 6 -4.6566 -11.1965 -1.2137 22 6 -5.8738 -11.1013 -2.0970 23 6 -7.0795 -10.6790 -1.5692 24 6 -8.1950 -10.5871 -2.3805 25 6 -8.1071 -10.9274 -3.7175 26 6 -6.9026 -11.3547 -4.2441 27 6 -5.7858 -11.4412 -3.4341 28 6 -0.5687 -6.1925 -0.4416 29 6 0.1117 -4.9964 -0.4628 30 1 -0.4849 0.8400 0.0004 31 1 2.9294 -3.6220 0.3346 32 1 2.6558 -5.7750 1.6403 33 1 1.4540 -7.9168 1.6765 34 1 -2.2786 -7.9513 -0.9027 35 1 -2.0149 -10.7565 -0.7050 36 1 -2.9766 -10.1843 0.6792 37 1 -4.5543 -9.0712 -0.8759 38 1 -3.5933 -9.6432 -2.2606 39 1 -4.0045 -11.9907 -1.5774 40 1 -4.9657 -11.4194 -0.1925 41 1 -7.1494 -10.4176 -0.5236 42 1 -9.1361 -10.2535 -1.9690 43 1 -8.9796 -10.8598 -4.3504 44 1 -6.8340 -11.6210 -5.2886 45 1 -4.8448 -11.7755 -3.8455 46 1 -1.4727 -6.3105 -1.0208 47 1 -0.2588 -4.1755 -1.0587 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003443632.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:20 Heat of formation + Delta-G solvation = -39.796633 kcal Electronic energy + Delta-G solvation = -28126.274389 eV Core-core repulsion = 24044.836103 eV Total energy + Delta-G solvation = -4081.438285 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.01621 -39.62305 -38.82052 -36.84609 -35.97540 -33.85933 -33.51650 -32.58146 -31.21659 -30.83404 -30.28571 -29.19096 -26.68090 -25.92089 -23.28644 -22.90762 -22.44417 -22.07719 -21.27419 -20.49937 -19.66783 -17.74654 -17.63487 -17.13758 -16.29894 -16.12705 -16.06260 -15.60284 -15.35864 -15.22269 -14.61258 -14.37522 -14.22435 -13.98320 -13.75420 -13.71223 -13.54665 -13.25834 -13.14039 -12.76232 -12.63933 -12.51602 -12.31432 -12.07860 -11.90641 -11.84441 -11.45937 -11.37099 -11.19314 -11.15732 -11.05047 -10.81519 -10.66064 -10.41822 -9.76590 -9.46959 -9.25358 -9.08876 -9.02603 -8.97474 -8.59615 -7.88760 -7.24823 -6.46214 -4.92436 1.01239 1.06900 1.32282 1.88775 3.00167 3.09070 3.12730 3.18559 3.20643 3.48052 3.90981 4.18284 4.31339 4.45246 4.46380 4.47679 4.67122 4.73354 4.77417 4.87305 4.91401 5.11231 5.12060 5.18366 5.19386 5.32863 5.36256 5.40705 5.51003 5.55169 5.68907 5.71158 5.74596 5.81209 5.89601 5.97492 6.07862 6.13531 6.19073 6.30000 6.43393 6.45711 6.67466 6.68844 6.79310 6.91285 7.17339 7.22299 7.57701 7.60048 7.90222 8.04013 8.36779 8.74729 9.05790 10.24709 10.44673 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.012531 B = 0.001629 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.964156 B =17189.464324 C =19012.090599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.086 3.914 3 Si 0.913 3.087 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.537 4.537 8 H 0.074 0.926 9 C 0.540 3.460 10 O -0.557 6.557 11 N -0.695 5.695 12 C 0.226 3.774 13 C -0.190 4.190 14 C -0.032 4.032 15 C -0.197 4.197 16 C 0.569 3.431 17 O -0.553 6.553 18 N -0.734 5.734 19 C 0.121 3.879 20 C -0.127 4.127 21 C -0.078 4.078 22 C -0.080 4.080 23 C -0.117 4.117 24 C -0.119 4.119 25 C -0.126 4.126 26 C -0.119 4.119 27 C -0.117 4.117 28 C -0.062 4.062 29 C -0.142 4.142 30 H 0.273 0.727 31 H 0.396 0.604 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.401 0.599 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.117 0.883 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.114 -19.575 -5.782 22.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.136 4.136 3 Si 0.737 3.263 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.573 4.573 8 H 0.092 0.908 9 C 0.347 3.653 10 O -0.439 6.439 11 N -0.337 5.337 12 C 0.125 3.875 13 C -0.212 4.212 14 C -0.052 4.052 15 C -0.202 4.202 16 C 0.359 3.641 17 O -0.432 6.432 18 N -0.387 5.387 19 C -0.003 4.003 20 C -0.165 4.165 21 C -0.116 4.116 22 C -0.080 4.080 23 C -0.135 4.135 24 C -0.137 4.137 25 C -0.144 4.144 26 C -0.137 4.137 27 C -0.135 4.135 28 C -0.082 4.082 29 C -0.163 4.163 30 H 0.084 0.916 31 H 0.230 0.770 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.236 0.764 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.135 0.865 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.857 -19.994 -5.322 23.365 hybrid contribution 0.637 1.261 -0.227 1.431 sum -10.219 -18.733 -5.549 22.048 Atomic orbital electron populations 1.69980 1.07230 1.28006 1.33201 1.25756 0.94712 1.00629 0.92453 0.86251 0.80273 0.80834 0.78899 1.19592 1.20172 1.18639 1.20872 0.94469 0.89159 1.52775 0.90800 1.18443 0.87468 0.82045 0.77369 1.90643 1.13617 1.85589 1.54022 1.44256 1.10015 1.04432 1.74998 1.18221 0.92551 0.86244 0.90505 1.20872 1.03582 0.94067 1.02643 1.20836 0.92480 0.96472 0.95429 1.19528 0.99795 0.94048 1.06802 1.18327 0.79755 0.87694 0.78286 1.90718 1.67766 1.42336 1.42367 1.45909 1.26763 1.15930 1.50103 1.21302 0.92572 0.86216 1.00174 1.21789 0.96123 0.97969 1.00580 1.20514 0.94070 0.97595 0.99384 1.19882 0.94992 0.98772 0.94393 1.21099 0.92504 0.99883 1.00010 1.21174 0.98598 0.99835 0.94048 1.21169 0.97871 0.99843 0.95563 1.21165 0.93036 0.99712 0.99786 1.21087 0.98679 1.00411 0.93357 1.21023 0.98146 0.92261 0.96720 1.21265 0.96603 0.97595 1.00803 0.91596 0.76975 0.85766 0.85382 0.76356 0.91521 0.91518 0.90898 0.90955 0.90517 0.90503 0.86008 0.86099 0.86220 0.86125 0.86041 0.86507 0.83810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.21 11.85 55.55 0.66 -20.55 16 2 C 0.09 2.24 5.50 -17.35 -0.10 2.15 16 3 Si 0.91 18.84 29.56 -169.99 -5.03 13.81 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.54 -14.07 9.53 -35.68 -0.34 -14.41 16 8 H 0.07 1.75 7.86 -52.48 -0.41 1.34 16 9 C 0.54 14.27 7.46 -13.07 -0.10 14.17 16 10 O -0.56 -16.59 12.70 5.16 0.07 -16.52 16 11 N -0.70 -14.77 5.30 -11.19 -0.06 -14.83 16 12 C 0.23 4.49 6.27 -83.81 -0.53 3.96 16 13 C -0.19 -3.21 9.94 -39.42 -0.39 -3.60 16 14 C -0.03 -0.53 9.58 -39.23 -0.38 -0.91 16 15 C -0.20 -3.23 5.88 -104.92 -0.62 -3.85 16 16 C 0.57 8.91 7.76 -12.44 -0.10 8.81 16 17 O -0.55 -10.14 16.34 5.29 0.09 -10.06 16 18 N -0.73 -8.74 5.50 -61.33 -0.34 -9.08 16 19 C 0.12 1.18 5.67 -4.04 -0.02 1.16 16 20 C -0.13 -0.93 5.31 -26.73 -0.14 -1.08 16 21 C -0.08 -0.52 5.35 -27.89 -0.15 -0.67 16 22 C -0.08 -0.62 5.13 -104.62 -0.54 -1.15 16 23 C -0.12 -0.90 9.70 -39.58 -0.38 -1.28 16 24 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 25 C -0.13 -0.91 10.05 -39.58 -0.40 -1.31 16 26 C -0.12 -0.86 10.05 -39.59 -0.40 -1.26 16 27 C -0.12 -0.88 9.70 -39.58 -0.38 -1.27 16 28 C -0.06 -1.01 9.53 -39.23 -0.37 -1.38 16 29 C -0.14 -2.81 8.62 -39.43 -0.34 -3.15 16 30 H 0.27 6.93 8.29 -40.82 -0.34 6.59 16 31 H 0.40 7.12 8.79 -40.82 -0.36 6.76 16 32 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.13 1.96 7.64 -52.49 -0.40 1.56 16 34 H 0.40 4.05 6.49 -40.82 -0.26 3.78 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 40 H 0.08 0.47 8.08 -51.93 -0.42 0.05 16 41 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 44 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 45 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 46 H 0.12 1.53 6.39 -52.48 -0.34 1.19 16 47 H 0.14 3.23 6.39 -52.49 -0.34 2.90 16 LS Contribution 402.60 15.07 6.07 6.07 Total: -1.00 -33.96 402.60 -10.92 -44.88 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -6.31 Total: 12.60 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -6.07 Total: -6.33 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.26 Total: -44.45 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: 0.15 Total: -26.58 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.96 -10.92 -44.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003443632.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.088 kcal (2) G-P(sol) polarization free energy of solvation -33.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds