Wall clock time and date at job start Tue Mar 31 2020 05:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86803 * 119.99633 * 2 1 4 4 H 1.48494 * 109.47388 * 270.00190 * 3 2 1 5 5 H 1.48499 * 109.47095 * 30.00898 * 3 2 1 6 6 H 1.48501 * 109.47101 * 150.00446 * 3 2 1 7 7 C 1.38808 * 120.00442 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99837 * 359.97438 * 7 2 1 9 9 O 1.34850 * 120.00582 * 179.97438 * 7 2 1 10 10 C 1.34727 * 117.00593 * 179.97438 * 9 7 2 11 11 O 1.21513 * 119.99672 * 359.97438 * 10 9 7 12 12 C 1.47662 * 120.00413 * 180.27430 * 10 9 7 13 13 C 1.39665 * 120.14855 * 359.44081 * 12 10 9 14 14 C 1.37935 * 119.84154 * 179.78991 * 13 12 10 15 15 C 1.38381 * 120.15440 * 0.47046 * 14 13 12 16 16 S 1.76199 * 119.84483 * 179.76263 * 15 14 13 17 17 O 1.42100 * 106.40466 * 23.56432 * 16 15 14 18 18 O 1.42106 * 106.39866 * 156.48099 * 16 15 14 19 19 N 1.65596 * 107.21901 * 270.01967 * 16 15 14 20 20 C 1.44572 * 118.64725 * 269.73604 * 19 16 15 21 21 C 1.54306 * 109.90922 * 270.85403 * 20 19 16 22 22 C 1.47095 * 110.29476 * 288.75612 * 21 20 19 23 23 C 1.52564 * 114.32577 * 62.73313 * 22 21 20 24 24 C 1.50876 * 109.35347 * 274.97805 * 23 22 21 25 25 C 1.47606 * 118.63977 * 90.00216 * 19 16 15 26 26 C 1.38381 * 120.30562 * 359.78420 * 15 14 13 27 27 C 1.37930 * 120.15608 * 359.97438 * 26 15 14 28 28 H 0.97002 * 120.00210 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.08399 * 0.02562 * 13 12 10 30 30 H 1.07999 * 119.92247 * 180.23348 * 14 13 12 31 31 H 1.09006 * 109.44742 * 30.76180 * 20 19 16 32 32 H 1.09001 * 109.45009 * 150.68121 * 20 19 16 33 33 H 1.09005 * 109.40371 * 168.46662 * 21 20 19 34 34 H 1.09003 * 109.14268 * 48.88606 * 21 20 19 35 35 H 1.08993 * 108.51018 * 301.47429 * 22 21 20 36 36 H 1.08999 * 108.38834 * 183.89423 * 22 21 20 37 37 H 1.09000 * 109.48927 * 155.01712 * 23 22 21 38 38 H 1.08999 * 109.49403 * 34.94603 * 23 22 21 39 39 H 1.08998 * 109.37141 * 331.69789 * 24 23 22 40 40 H 1.09001 * 109.36861 * 212.07932 * 24 23 22 41 41 H 1.09005 * 108.94642 * 258.55125 * 25 19 16 42 42 H 1.09001 * 108.95006 * 17.27271 * 25 19 16 43 43 H 1.08003 * 119.91330 * 179.97438 * 26 15 14 44 44 H 1.07997 * 120.07724 * 179.97438 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4455 2.6526 0.7002 6 1 3.5457 1.4403 0.6999 7 6 2.0083 -1.2021 -0.0005 8 1 1.4683 -2.1374 -0.0005 9 8 3.3568 -1.2021 -0.0011 10 6 3.9685 -2.4025 -0.0010 11 8 3.3067 -3.4216 -0.0001 12 6 5.4431 -2.4797 0.0045 13 6 6.2068 -1.3104 -0.0020 14 6 7.5838 -1.3900 0.0076 15 6 8.2088 -2.6246 0.0139 16 16 9.9684 -2.7167 0.0199 17 8 10.4327 -1.4880 0.5621 18 8 10.3019 -3.9840 0.5694 19 7 10.4630 -2.7473 -1.5601 20 6 10.6093 -4.0273 -2.2160 21 6 12.0390 -4.5670 -2.0021 22 6 13.0038 -3.7804 -2.7857 23 6 13.0891 -2.3108 -2.3851 24 6 12.0141 -1.5334 -3.1037 25 6 10.7421 -1.4666 -2.2390 26 6 7.4582 -3.7872 0.0151 27 6 6.0805 -3.7224 0.0105 28 1 -0.4850 0.8400 0.0004 29 1 5.7205 -0.3462 -0.0107 30 1 8.1757 -0.4866 0.0064 31 1 9.8931 -4.7340 -1.7965 32 1 10.4218 -3.9118 -3.2835 33 1 12.0834 -5.6097 -2.3169 34 1 12.2923 -4.4985 -0.9441 35 1 12.7231 -3.8368 -3.8374 36 1 13.9900 -4.2292 -2.6674 37 1 14.0677 -1.9157 -2.6581 38 1 12.9467 -2.2184 -1.3085 39 1 11.7832 -2.0248 -4.0489 40 1 12.3701 -0.5224 -3.3016 41 1 9.8947 -1.2113 -2.8753 42 1 10.8673 -0.6874 -1.4872 43 1 7.9526 -4.7474 0.0196 44 1 5.4960 -4.6306 0.0111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003564682.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:50 Heat of formation + Delta-G solvation = -126.367930 kcal Electronic energy + Delta-G solvation = -29305.570402 eV Core-core repulsion = 25122.270298 eV Total energy + Delta-G solvation = -4183.300104 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 353.118 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -39.83300 -39.13073 -38.44243 -37.49802 -36.00533 -35.52928 -34.04259 -32.91962 -32.58921 -31.50642 -31.07041 -26.59882 -26.17170 -25.78387 -23.96207 -22.72055 -21.58076 -20.77356 -20.39915 -19.14304 -18.25593 -17.99409 -17.82892 -17.20051 -16.69201 -15.75702 -15.56760 -15.31248 -14.95170 -14.81123 -14.70850 -14.59279 -14.13233 -14.00244 -13.80359 -13.55018 -13.29090 -13.13597 -12.91283 -12.79193 -12.58364 -12.48919 -12.30212 -12.24006 -12.16587 -11.58785 -11.47447 -11.25644 -11.18642 -11.05602 -10.96241 -10.85407 -10.74711 -10.69235 -10.54639 -9.90976 -9.46000 -9.38568 -9.25383 -9.08531 -8.88182 -6.60243 -4.29204 0.11853 0.48942 1.30447 2.60814 2.96253 3.11281 3.14217 3.23006 3.51758 3.83819 3.93579 4.06563 4.07306 4.21413 4.47658 4.51206 4.64969 4.74690 4.78090 4.81208 4.81982 4.93909 5.03409 5.23161 5.26299 5.32072 5.32638 5.36530 5.43935 5.58767 5.60245 5.69194 5.71895 5.76070 5.82489 5.87768 5.90515 5.94213 6.03369 6.06425 6.25469 6.38467 6.50315 6.76679 7.49988 7.81210 8.41219 8.76113 9.43761 10.46553 Molecular weight = 353.12amu Principal moments of inertia in cm(-1) A = 0.019321 B = 0.002587 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.845890 B =10820.600255 C =11419.586923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.370 4.370 8 H 0.114 0.886 9 O -0.235 6.235 10 C 0.429 3.571 11 O -0.531 6.531 12 C -0.026 4.026 13 C -0.103 4.103 14 C -0.031 4.031 15 C -0.674 4.674 16 S 2.688 3.312 17 O -0.957 6.957 18 O -0.953 6.953 19 N -0.988 5.988 20 C 0.124 3.876 21 C -0.142 4.142 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.125 4.125 25 C 0.109 3.891 26 C -0.031 4.031 27 C -0.093 4.093 28 H 0.284 0.716 29 H 0.146 0.854 30 H 0.142 0.858 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.095 0.905 43 H 0.143 0.857 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.429 -3.367 -7.097 27.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.445 4.445 8 H 0.132 0.868 9 O -0.143 6.143 10 C 0.276 3.724 11 O -0.428 6.428 12 C -0.028 4.028 13 C -0.122 4.122 14 C -0.050 4.050 15 C -0.761 4.761 16 S 2.780 3.220 17 O -0.948 6.948 18 O -0.944 6.944 19 N -0.826 5.826 20 C -0.002 4.002 21 C -0.181 4.181 22 C -0.155 4.155 23 C -0.156 4.156 24 C -0.164 4.164 25 C -0.015 4.015 26 C -0.050 4.050 27 C -0.112 4.112 28 H 0.095 0.905 29 H 0.164 0.836 30 H 0.160 0.840 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.113 0.887 43 H 0.160 0.840 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 26.555 -3.497 -6.404 27.539 hybrid contribution -0.735 0.748 -0.327 1.098 sum 25.819 -2.750 -6.731 26.824 Atomic orbital electron populations 1.69582 1.05856 1.29030 1.44998 1.24633 0.95095 0.99007 0.95269 0.86199 0.80457 0.81080 0.79217 1.19493 1.20356 1.18124 1.20797 0.75959 0.97277 1.50431 0.86847 1.83512 1.24151 1.31107 1.75489 1.20400 0.87579 0.82901 0.81483 1.90693 1.66135 1.35816 1.50161 1.19767 0.91420 0.94354 0.97212 1.21671 0.93481 0.99094 0.97933 1.20824 0.94990 0.95888 0.93288 1.30954 1.26621 0.99793 1.18781 1.02118 0.73790 0.73579 0.72526 1.93560 1.79553 1.45617 1.76027 1.93577 1.82739 1.42301 1.75745 1.57150 1.81408 1.11705 1.32374 1.21168 0.97065 0.82761 0.99201 1.21239 0.95270 0.99758 1.01854 1.20460 0.99468 0.95412 1.00168 1.21079 0.98423 0.95083 1.01027 1.21692 0.94626 1.01323 0.98738 1.21839 0.98178 0.83790 0.97693 1.20768 0.93733 0.96866 0.93638 1.21361 0.94132 0.97644 0.98052 0.90524 0.83646 0.84048 0.90160 0.89946 0.90493 0.91025 0.92157 0.92461 0.91795 0.91760 0.91300 0.90549 0.91336 0.88679 0.83964 0.83678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.29 13.96 55.49 0.77 -23.52 16 2 C 0.07 1.81 5.50 -17.52 -0.10 1.71 16 3 Si 0.91 20.29 28.62 -169.99 -4.86 15.43 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.37 -10.61 10.11 30.94 0.31 -10.30 16 8 H 0.11 3.59 7.09 -52.48 -0.37 3.22 16 9 O -0.23 -6.02 7.82 -21.61 -0.17 -6.19 16 10 C 0.43 10.15 7.84 34.58 0.27 10.42 16 11 O -0.53 -13.99 15.59 -19.28 -0.30 -14.29 16 12 C -0.03 -0.48 5.87 -104.99 -0.62 -1.10 16 13 C -0.10 -1.66 9.62 -39.16 -0.38 -2.03 16 14 C -0.03 -0.41 9.50 -39.64 -0.38 -0.79 16 15 C -0.67 -8.73 5.98 -39.48 -0.24 -8.97 16 16 S 2.69 31.38 5.57 -107.50 -0.60 30.78 16 17 O -0.96 -13.08 15.64 -57.17 -0.89 -13.98 16 18 O -0.95 -12.76 15.49 -57.17 -0.89 -13.65 16 19 N -0.99 -8.58 2.55 -113.63 -0.29 -8.87 16 20 C 0.12 0.91 5.20 -4.39 -0.02 0.89 16 21 C -0.14 -1.01 5.68 -28.88 -0.16 -1.18 16 22 C -0.12 -0.73 5.15 -29.79 -0.15 -0.88 16 23 C -0.12 -0.79 5.51 -28.02 -0.15 -0.94 16 24 C -0.12 -0.73 5.71 -27.30 -0.16 -0.89 16 25 C 0.11 0.80 6.24 -2.94 -0.02 0.78 16 26 C -0.03 -0.41 9.50 -39.64 -0.38 -0.78 16 27 C -0.09 -1.47 9.60 -39.16 -0.38 -1.84 16 28 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.15 2.31 7.61 -52.49 -0.40 1.91 16 30 H 0.14 1.56 7.60 -52.49 -0.40 1.16 16 31 H 0.08 0.56 7.67 -51.93 -0.40 0.16 16 32 H 0.08 0.47 8.06 -51.93 -0.42 0.05 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.64 7.47 -51.93 -0.39 0.25 16 35 H 0.06 0.32 7.36 -51.93 -0.38 -0.06 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.53 7.48 -51.93 -0.39 0.14 16 39 H 0.07 0.36 7.32 -51.93 -0.38 -0.02 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.09 0.74 6.66 -51.93 -0.35 0.39 16 43 H 0.14 1.50 7.60 -52.48 -0.40 1.10 16 44 H 0.15 2.22 7.65 -52.49 -0.40 1.82 16 LS Contribution 372.14 15.07 5.61 5.61 Total: -1.00 -33.85 372.14 -10.08 -43.93 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.92 Total: 0.65 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -2.54 Total: -15.90 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.48 Total: -32.39 kcal Atomic # 8 Polarization: -45.86 SS G_CDS: -2.25 Total: -48.11 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.86 Total: 15.43 kcal Atomic # 16 Polarization: 31.38 SS G_CDS: -0.60 Total: 30.78 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.85 -10.08 -43.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003564682.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.434 kcal (2) G-P(sol) polarization free energy of solvation -33.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds