Wall clock time and date at job start Tue Mar 31 2020 05:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42900 * 109.46915 * 2 1 4 4 C 1.35908 * 116.99727 * 180.02562 * 3 2 1 5 5 C 1.39683 * 119.68291 * 359.97438 * 4 3 2 6 6 C 1.36223 * 120.96567 * 180.02562 * 5 4 3 7 7 C 1.40248 * 119.79892 * 0.02562 * 6 5 4 8 8 N 1.34013 * 121.77419 * 179.97438 * 7 6 5 9 9 C 1.32033 * 120.46444 * 179.97438 * 8 7 6 10 10 C 1.48280 * 118.61563 * 180.02562 * 9 8 7 11 11 C 1.39393 * 120.12781 * 359.69939 * 10 9 8 12 12 C 1.38012 * 119.86805 * 179.74402 * 11 10 9 13 13 C 1.38328 * 120.12653 * 0.51190 * 12 11 10 14 14 C 1.38333 * 120.25611 * 359.76756 * 13 12 11 15 15 C 1.38002 * 120.12502 * 359.97438 * 14 13 12 16 16 N 1.33089 * 122.76240 * 359.97438 * 9 8 7 17 17 C 1.32560 * 121.38556 * 0.02562 * 16 9 8 18 18 S 1.76204 * 120.84474 * 180.02562 * 17 16 9 19 19 C 1.76199 * 100.00246 * 0.02562 * 18 17 16 20 20 H 1.08005 * 119.99826 * 359.72222 * 19 18 17 21 21 C 1.38865 * 120.00402 * 180.02562 * 19 18 17 22 22 N 1.31494 * 119.99706 * 359.71772 * 21 19 18 23 23 Si 1.86798 * 120.00044 * 179.72428 * 21 19 18 24 24 H 1.48493 * 109.47326 * 89.99926 * 23 21 19 25 25 H 1.48506 * 109.46545 * 209.99676 * 23 21 19 26 26 H 1.48498 * 109.47210 * 329.99387 * 23 21 19 27 27 C 1.41734 * 119.46599 * 0.26529 * 7 6 5 28 28 C 1.37925 * 119.68042 * 180.02562 * 4 3 2 29 29 H 1.08999 * 109.46863 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46778 * 300.00426 * 1 2 3 31 31 H 1.08997 * 109.47242 * 60.00129 * 1 2 3 32 32 H 1.08996 * 109.46732 * 240.00041 * 2 1 3 33 33 H 1.08997 * 109.47242 * 119.99871 * 2 1 3 34 34 H 1.08007 * 119.51683 * 0.05867 * 5 4 3 35 35 H 1.07990 * 120.09979 * 179.97438 * 6 5 4 36 36 H 1.07998 * 120.06291 * 359.97438 * 11 10 9 37 37 H 1.08001 * 119.93437 * 180.23576 * 12 11 10 38 38 H 1.07999 * 119.87110 * 179.74127 * 13 12 11 39 39 H 1.08001 * 119.93361 * 180.02562 * 14 13 12 40 40 H 1.08002 * 120.06125 * 180.02562 * 15 14 13 41 41 H 0.97000 * 120.00313 * 180.02562 * 22 21 19 42 42 H 1.07996 * 120.30460 * 359.97438 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1984 0.4129 -0.0005 6 6 5.5526 0.5611 -0.0005 7 6 6.1130 1.8467 0.0000 8 7 7.4394 2.0383 0.0005 9 6 7.9392 3.2604 0.0005 10 6 9.4129 3.4250 0.0005 11 6 10.2420 2.3045 0.0068 12 6 11.6129 2.4638 0.0014 13 6 12.1644 3.7324 0.0005 14 6 11.3464 4.8480 0.0000 15 6 9.9743 4.7008 0.0000 16 7 7.1760 4.3507 -0.0006 17 6 5.8530 4.2673 -0.0011 18 16 4.8561 5.7202 -0.0032 19 6 6.1139 6.9542 -0.0047 20 1 7.1544 6.6648 0.0004 21 6 5.7673 8.2990 -0.0060 22 7 4.5005 8.6514 -0.0117 23 14 7.1007 9.6071 0.0003 24 1 7.4604 9.9541 -1.3981 25 1 6.6016 10.8192 0.6983 26 1 8.3000 9.0882 0.7057 27 6 5.2605 2.9789 0.0062 28 6 3.8738 2.8028 0.0000 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.7717 -0.5793 -0.0010 35 1 6.1926 -0.3087 -0.0001 36 1 9.8124 1.3136 0.0122 37 1 12.2563 1.5964 0.0025 38 1 13.2377 3.8523 0.0005 39 1 11.7826 5.8360 -0.0012 40 1 9.3367 5.5725 -0.0008 41 1 4.2583 9.5907 -0.0130 42 1 3.2157 3.6591 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004130247.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:48 Heat of formation + Delta-G solvation = 41.627812 kcal Electronic energy + Delta-G solvation = -26892.208701 eV Core-core repulsion = 23121.221021 eV Total energy + Delta-G solvation = -3770.987680 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 352.099 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.65841 -39.36844 -38.48909 -36.12107 -33.39998 -32.92581 -32.04915 -31.37832 -30.71177 -30.39271 -28.22257 -25.95312 -24.86427 -24.19219 -23.07687 -22.05831 -21.70488 -21.36731 -18.61551 -18.52571 -17.44850 -17.14370 -16.26776 -16.09585 -15.38180 -15.20838 -15.11040 -14.84066 -14.48235 -14.24710 -13.99826 -13.71762 -13.44710 -13.21385 -13.15380 -12.92386 -12.72159 -12.63074 -12.50864 -12.02305 -11.58676 -11.44786 -11.31596 -11.19612 -11.09097 -10.96322 -10.90235 -10.77400 -10.47405 -10.38247 -10.29245 -9.41131 -9.05208 -8.96342 -8.68385 -8.54587 -8.31053 -7.74862 -6.88119 -6.69060 -4.37021 0.54045 1.04366 1.67834 1.76975 2.34461 2.74667 3.07943 3.12288 3.19256 3.26822 3.36651 3.82176 4.06541 4.33951 4.64436 4.69686 4.80134 4.82064 4.83687 4.89220 5.02993 5.07234 5.11894 5.14982 5.22631 5.30568 5.36899 5.41501 5.60799 5.65369 5.71423 5.78035 5.87155 5.92886 5.99307 6.14313 6.24331 6.26961 6.35300 6.46029 6.60691 6.72603 6.74437 6.93981 7.07205 7.19979 7.37898 7.50511 7.80247 8.22816 8.82347 8.88911 10.37433 Molecular weight = 352.10amu Principal moments of inertia in cm(-1) A = 0.007217 B = 0.004192 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3878.960134 B = 6677.055605 C =10535.561987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.314 6.314 4 C 0.096 3.904 5 C -0.157 4.157 6 C -0.081 4.081 7 C 0.154 3.846 8 N -0.553 5.553 9 C 0.373 3.627 10 C -0.030 4.030 11 C -0.076 4.076 12 C -0.138 4.138 13 C -0.112 4.112 14 C -0.134 4.134 15 C -0.071 4.071 16 N -0.528 5.528 17 C 0.151 3.849 18 S 0.189 5.811 19 C -0.540 4.540 20 H 0.114 0.886 21 C 0.077 3.923 22 N -0.862 5.862 23 Si 0.931 3.069 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.263 1.263 27 C -0.123 4.123 28 C -0.100 4.100 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.141 0.859 41 H 0.279 0.721 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.513 -14.033 0.030 14.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.229 6.229 4 C 0.049 3.951 5 C -0.179 4.179 6 C -0.102 4.102 7 C 0.027 3.973 8 N -0.274 5.274 9 C 0.102 3.898 10 C -0.033 4.033 11 C -0.096 4.096 12 C -0.156 4.156 13 C -0.130 4.130 14 C -0.152 4.152 15 C -0.090 4.090 16 N -0.252 5.252 17 C -0.113 4.113 18 S 0.439 5.561 19 C -0.689 4.689 20 H 0.131 0.869 21 C -0.134 4.134 22 N -0.495 5.495 23 Si 0.756 3.244 24 H -0.197 1.197 25 H -0.205 1.205 26 H -0.187 1.187 27 C -0.134 4.134 28 C -0.122 4.122 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.148 0.852 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.159 0.841 41 H 0.089 0.911 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.864 -13.355 0.035 13.383 hybrid contribution 1.172 0.287 -0.002 1.207 sum 2.036 -13.068 0.033 13.226 Atomic orbital electron populations 1.21767 0.92958 1.02535 1.03650 1.22728 0.95763 0.82539 1.01094 1.86089 1.18934 1.28559 1.89292 1.18716 0.82154 0.93555 1.00630 1.20982 0.93980 0.97939 1.04992 1.20353 0.93881 0.95421 1.00566 1.18631 0.89089 0.92748 0.96844 1.68566 1.11967 1.24157 1.22739 1.21060 0.93567 0.84476 0.90696 1.18209 0.88477 0.93768 1.02805 1.21300 0.92779 0.98898 0.96642 1.21031 0.94758 0.97203 1.02569 1.21219 0.99523 0.92801 0.99491 1.21107 0.93430 0.98775 1.01847 1.21504 0.94930 0.97506 0.95099 1.68685 1.04293 1.31039 1.21200 1.24995 0.94259 0.98470 0.93532 1.83459 1.08281 0.89810 1.74549 1.23671 0.96661 0.91321 1.57228 0.86863 1.25237 0.96860 0.98460 0.92854 1.69898 1.16317 1.19147 1.44140 0.85931 0.80591 0.78955 0.78947 1.19670 1.20462 1.18729 1.18803 0.94073 0.94430 1.06048 1.20270 0.93384 0.95416 1.03086 0.90658 0.91485 0.91479 0.92267 0.92266 0.85225 0.84787 0.84839 0.86104 0.86357 0.85902 0.84149 0.91130 0.84039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.16 0.38 -0.82 16 2 C 0.05 0.53 5.45 37.16 0.20 0.73 16 3 O -0.31 -4.49 10.12 -19.45 -0.20 -4.69 16 4 C 0.10 1.52 6.68 -39.16 -0.26 1.26 16 5 C -0.16 -2.18 8.94 -39.77 -0.36 -2.53 16 6 C -0.08 -1.27 9.99 -39.55 -0.40 -1.67 16 7 C 0.15 3.02 6.61 -84.82 -0.56 2.46 16 8 N -0.55 -11.25 9.39 -9.21 -0.09 -11.34 16 9 C 0.37 7.97 7.55 -157.01 -1.18 6.78 16 10 C -0.03 -0.57 5.88 -104.91 -0.62 -1.18 16 11 C -0.08 -1.20 9.55 -39.23 -0.37 -1.58 16 12 C -0.14 -1.79 10.03 -39.63 -0.40 -2.19 16 13 C -0.11 -1.41 10.04 -39.51 -0.40 -1.81 16 14 C -0.13 -1.92 10.03 -39.63 -0.40 -2.32 16 15 C -0.07 -1.25 9.55 -39.24 -0.37 -1.63 16 16 N -0.53 -12.33 7.57 -9.51 -0.07 -12.40 16 17 C 0.15 3.49 7.07 -15.87 -0.11 3.37 16 18 S 0.19 4.56 20.26 -107.50 -2.18 2.39 16 19 C -0.54 -14.20 9.28 30.96 0.29 -13.91 16 20 H 0.11 3.00 6.60 -52.48 -0.35 2.65 16 21 C 0.08 1.98 5.49 -17.46 -0.10 1.88 16 22 N -0.86 -22.87 13.22 55.49 0.73 -22.13 16 23 Si 0.93 19.94 29.55 -169.99 -5.02 14.92 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 27 C -0.12 -2.55 5.76 -106.62 -0.61 -3.16 16 28 C -0.10 -1.84 9.41 -39.12 -0.37 -2.21 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.51 7.64 -51.93 -0.40 0.11 16 33 H 0.06 0.51 7.64 -51.93 -0.40 0.11 16 34 H 0.13 1.33 6.22 -52.48 -0.33 1.00 16 35 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 36 H 0.13 2.03 7.48 -52.49 -0.39 1.64 16 37 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 40 H 0.14 2.72 7.48 -52.49 -0.39 2.33 16 41 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.14 2.61 7.00 -52.49 -0.37 2.25 16 LS Contribution 374.06 15.07 5.64 5.64 Total: -1.00 -29.73 374.06 -11.53 -41.27 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -4.71 Total: 4.88 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -5.63 Total: -18.52 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: 0.57 Total: -45.88 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -0.20 Total: -4.69 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 16 Polarization: 4.56 SS G_CDS: -2.18 Total: 2.39 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.73 -11.53 -41.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004130247.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.896 kcal (2) G-P(sol) polarization free energy of solvation -29.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds