Wall clock time and date at job start Tue Mar 31 2020 05:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00222 * 2 1 4 4 H 1.48510 * 109.46918 * 239.99872 * 3 2 1 5 5 H 1.48499 * 109.47431 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47296 * 120.00241 * 3 2 1 7 7 C 1.37881 * 119.99410 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99753 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00135 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99512 * 269.99959 * 10 9 7 12 12 S 1.71206 * 119.99445 * 185.35614 * 11 10 9 13 13 N 1.34777 * 120.00263 * 5.35435 * 11 10 9 14 14 C 1.39945 * 119.99806 * 185.86169 * 13 11 10 15 15 C 1.38870 * 120.05679 * 220.58370 * 14 13 11 16 16 C 1.38113 * 119.93611 * 179.77544 * 15 14 13 17 17 C 1.38379 * 120.06099 * 0.50497 * 16 15 14 18 18 Cl 1.73603 * 119.94270 * 179.72825 * 17 16 15 19 19 C 1.38386 * 120.11691 * 359.74530 * 17 16 15 20 20 C 1.38107 * 120.05523 * 0.02562 * 19 17 16 21 21 C 1.46492 * 120.00140 * 89.99847 * 10 9 7 22 22 C 1.52996 * 109.47240 * 56.05660 * 21 10 9 23 23 C 1.52996 * 109.47486 * 179.97438 * 22 21 10 24 24 C 1.53002 * 109.47163 * 59.99980 * 23 22 21 25 25 C 1.53001 * 109.46854 * 300.00024 * 24 23 22 26 26 C 1.53000 * 109.47003 * 60.00274 * 25 24 23 27 27 H 0.97006 * 119.99362 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47283 * 59.99866 * 9 7 2 29 29 H 1.08998 * 109.47333 * 299.99592 * 9 7 2 30 30 H 0.97001 * 119.99750 * 5.86266 * 13 11 10 31 31 H 1.08003 * 120.02995 * 359.97438 * 15 14 13 32 32 H 1.08004 * 119.96432 * 180.23328 * 16 15 14 33 33 H 1.08000 * 119.96982 * 179.97438 * 19 17 16 34 34 H 1.08000 * 120.02445 * 179.97438 * 20 19 17 35 35 H 1.09001 * 109.46853 * 176.05382 * 21 10 9 36 36 H 1.08999 * 109.47005 * 300.00189 * 22 21 10 37 37 H 1.09005 * 109.46974 * 59.99920 * 22 21 10 38 38 H 1.09008 * 109.47258 * 300.00285 * 23 22 21 39 39 H 1.08996 * 109.47603 * 179.97438 * 23 22 21 40 40 H 1.08995 * 109.47061 * 180.02562 * 24 23 22 41 41 H 1.08999 * 109.46938 * 59.99988 * 24 23 22 42 42 H 1.08997 * 109.47834 * 299.99793 * 25 24 23 43 43 H 1.08996 * 109.47070 * 179.97438 * 25 24 23 44 44 H 1.09001 * 109.47026 * 180.02562 * 26 25 24 45 45 H 1.08999 * 109.47527 * 59.99584 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6128 0.0018 11 6 2.6416 -4.1255 -1.1650 12 16 3.6452 -5.5125 -1.1668 13 7 2.2902 -3.5463 -2.3301 14 6 2.6423 -4.1469 -3.5442 15 6 3.0815 -3.3657 -4.6050 16 6 3.4327 -3.9614 -5.8005 17 6 3.3374 -5.3343 -5.9452 18 17 3.7731 -6.0792 -7.4516 19 6 2.8952 -6.1146 -4.8913 20 6 2.5472 -5.5244 -3.6921 21 6 2.6778 -4.1690 1.2710 22 6 1.4801 -4.6098 2.1147 23 6 1.9762 -5.1913 3.4401 24 6 2.7701 -4.1261 4.1990 25 6 3.9679 -3.6853 3.3553 26 6 3.4718 -3.1038 2.0299 27 1 -0.4849 0.8402 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6239 -2.5568 0.8903 30 1 1.7933 -2.7133 -2.3272 31 1 3.1513 -2.2936 -4.4942 32 1 3.7779 -3.3547 -6.6246 33 1 2.8213 -7.1858 -5.0069 34 1 2.2017 -6.1337 -2.8701 35 1 3.3192 -5.0280 1.0739 36 1 0.8387 -3.7508 2.3118 37 1 0.9147 -5.3690 1.5743 38 1 2.6174 -6.0504 3.2427 39 1 1.1229 -5.5049 4.0414 40 1 3.1239 -4.5405 5.1430 41 1 2.1289 -3.2670 4.3965 42 1 4.6092 -4.5443 3.1578 43 1 4.5333 -2.9262 3.8957 44 1 4.3252 -2.7902 1.4287 45 1 2.8306 -2.2447 2.2274 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004395035.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:37 Heat of formation + Delta-G solvation = 17.523072 kcal Electronic energy + Delta-G solvation = -26869.073868 eV Core-core repulsion = 23230.441173 eV Total energy + Delta-G solvation = -3638.632695 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 352.107 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.09876 -39.09566 -37.29850 -36.29508 -34.61426 -33.08870 -31.00049 -30.50008 -30.02593 -28.85375 -27.89134 -24.41520 -23.32801 -22.80153 -22.28971 -21.65450 -20.57473 -19.26801 -18.24027 -17.40427 -16.89365 -16.59028 -15.78831 -15.34677 -15.01708 -14.78035 -14.22494 -14.03645 -13.99158 -13.74954 -13.53301 -13.39164 -13.32077 -12.61608 -12.49331 -12.25818 -12.09330 -11.93204 -11.83456 -11.53545 -11.40477 -11.24126 -11.04807 -11.00113 -10.81858 -10.75620 -10.73562 -10.49918 -10.32028 -10.13980 -9.93464 -9.76548 -9.10349 -8.95095 -8.88579 -7.89243 -7.24393 -6.68255 -6.49958 -4.61888 1.08587 1.48327 2.04168 2.21421 2.45005 3.05022 3.05920 3.12075 3.14988 3.78670 3.82623 4.08659 4.82566 4.91554 4.96411 5.00509 5.01199 5.13885 5.37785 5.39948 5.49392 5.53501 5.63036 5.73903 5.76346 5.82053 5.89972 5.95251 6.04264 6.09626 6.18194 6.23224 6.25891 6.38697 6.39752 6.42524 6.46553 6.49170 6.59931 6.67387 6.75605 6.83153 6.96313 7.15691 7.40227 7.53452 7.59847 7.79094 8.45588 9.08087 10.55311 Molecular weight = 352.11amu Principal moments of inertia in cm(-1) A = 0.009716 B = 0.003613 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.270180 B = 7748.108842 C = 9921.314729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.072 3.928 3 Si 0.900 3.100 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.550 4.550 8 H 0.067 0.933 9 C 0.218 3.782 10 N -0.526 5.526 11 C 0.573 3.427 12 S -0.695 6.695 13 N -0.634 5.634 14 C 0.155 3.845 15 C -0.119 4.119 16 C -0.106 4.106 17 C -0.041 4.041 18 Cl -0.084 7.084 19 C -0.104 4.104 20 C -0.064 4.064 21 C 0.131 3.869 22 C -0.125 4.125 23 C -0.111 4.111 24 C -0.120 4.120 25 C -0.114 4.114 26 C -0.122 4.122 27 H 0.270 0.730 28 H 0.036 0.964 29 H 0.058 0.942 30 H 0.422 0.578 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.153 0.847 35 H 0.127 0.873 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.972 -6.699 -2.621 7.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.133 4.133 3 Si 0.727 3.273 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.588 4.588 8 H 0.085 0.915 9 C 0.096 3.904 10 N -0.226 5.226 11 C 0.211 3.789 12 S -0.563 6.563 13 N -0.262 5.262 14 C 0.060 3.940 15 C -0.141 4.141 16 C -0.125 4.125 17 C -0.068 4.068 18 Cl -0.055 7.055 19 C -0.125 4.125 20 C -0.087 4.087 21 C 0.028 3.972 22 C -0.163 4.163 23 C -0.149 4.149 24 C -0.158 4.158 25 C -0.152 4.152 26 C -0.160 4.160 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.265 0.735 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.171 0.829 35 H 0.145 0.855 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.400 -7.446 -2.554 8.230 hybrid contribution -0.304 2.279 -0.101 2.301 sum 2.096 -5.167 -2.655 6.176 Atomic orbital electron populations 1.69901 1.06068 1.28085 1.47965 1.24936 0.94878 0.99491 0.94024 0.86495 0.79571 0.82053 0.79163 1.19916 1.20916 1.19800 1.21320 0.93713 0.89555 1.54260 0.91497 1.19841 0.87838 0.82980 0.99723 1.47732 1.39657 1.31710 1.03475 1.22076 0.84855 0.89961 0.82049 1.93014 1.48866 1.20841 1.93593 1.42359 1.55307 1.26422 1.02153 1.17552 0.99281 0.92607 0.84535 1.20865 1.00241 1.00323 0.92633 1.20668 1.01493 0.92556 0.97827 1.20879 1.04899 0.93186 0.87848 1.98343 1.91841 1.82807 1.32514 1.20800 1.00439 1.00042 0.91196 1.21410 0.97170 0.93523 0.96579 1.21735 0.96510 0.98517 0.80478 1.21839 0.97604 1.01154 0.95726 1.21443 0.99655 0.98282 0.95532 1.21561 0.97353 0.98909 0.97963 1.21494 0.97420 1.00515 0.95809 1.21848 1.00210 0.98735 0.95219 0.91981 0.94654 0.92424 0.73513 0.84828 0.84939 0.84913 0.82921 0.85541 0.91021 0.91920 0.91752 0.91996 0.92363 0.91830 0.92032 0.92048 0.91986 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.90 13.29 55.43 0.74 -21.16 16 2 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 18.89 29.54 -169.99 -5.02 13.87 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.55 -12.46 7.69 -34.44 -0.26 -12.72 16 8 H 0.07 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.22 4.49 4.34 -5.19 -0.02 4.47 16 10 N -0.53 -9.82 2.39 -169.48 -0.40 -10.23 16 11 C 0.57 10.90 7.44 -86.91 -0.65 10.26 16 12 S -0.70 -14.18 24.15 -107.50 -2.60 -16.77 16 13 N -0.63 -11.06 5.11 -11.39 -0.06 -11.12 16 14 C 0.16 2.49 5.93 -83.69 -0.50 1.99 16 15 C -0.12 -1.68 9.97 -39.39 -0.39 -2.07 16 16 C -0.11 -1.35 9.82 -39.58 -0.39 -1.74 16 17 C -0.04 -0.54 6.32 -39.47 -0.25 -0.79 16 18 Cl -0.08 -0.98 28.95 -51.86 -1.50 -2.49 16 19 C -0.10 -1.43 9.82 -39.57 -0.39 -1.82 16 20 C -0.06 -1.00 7.85 -39.40 -0.31 -1.31 16 21 C 0.13 2.23 2.43 -67.94 -0.16 2.06 16 22 C -0.12 -1.88 5.10 -26.73 -0.14 -2.01 16 23 C -0.11 -1.38 5.92 -26.73 -0.16 -1.54 16 24 C -0.12 -1.47 5.92 -26.73 -0.16 -1.63 16 25 C -0.11 -1.54 5.92 -26.73 -0.16 -1.69 16 26 C -0.12 -2.02 4.59 -26.73 -0.12 -2.14 16 27 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 28 H 0.04 0.76 6.70 -51.93 -0.35 0.41 16 29 H 0.06 1.26 6.23 -51.93 -0.32 0.94 16 30 H 0.42 7.42 6.70 -40.82 -0.27 7.15 16 31 H 0.13 1.72 8.06 -52.48 -0.42 1.29 16 32 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 33 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.15 2.58 6.18 -47.82 -0.30 2.29 16 35 H 0.13 2.30 5.81 -47.08 -0.27 2.03 16 36 H 0.07 1.16 6.54 -51.93 -0.34 0.82 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.08 1.57 6.92 -51.93 -0.36 1.21 16 LS Contribution 379.59 15.07 5.72 5.72 Total: -1.00 -25.12 379.59 -13.68 -38.80 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -6.40 Total: 12.47 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -4.16 Total: -9.09 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.27 Total: -42.51 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Atomic # 16 Polarization: -14.18 SS G_CDS: -2.60 Total: -16.77 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -25.12 -13.68 -38.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004395035.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.319 kcal (2) G-P(sol) polarization free energy of solvation -25.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds