Wall clock time and date at job start Tue Mar 31 2020 05:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47345 * 42.58887 * 3 2 1 5 5 C 1.37091 * 120.00121 * 265.01029 * 4 3 2 6 6 H 1.08000 * 119.99960 * 199.96119 * 5 4 3 7 7 C 1.38952 * 119.99966 * 19.95660 * 5 4 3 8 8 N 1.31408 * 119.99940 * 18.25502 * 7 5 4 9 9 Si 1.86801 * 119.99771 * 198.25514 * 7 5 4 10 10 H 1.48493 * 109.47264 * 60.00296 * 9 7 5 11 11 H 1.48506 * 109.46788 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47225 * 299.99893 * 9 7 5 13 13 C 1.34775 * 119.99651 * 85.00760 * 4 3 2 14 14 O 1.21291 * 119.99974 * 180.02562 * 13 4 3 15 15 C 1.50702 * 120.00331 * 0.02562 * 13 4 3 16 16 H 1.09001 * 109.46750 * 39.99980 * 15 13 4 17 17 S 1.81401 * 109.47265 * 159.99915 * 15 13 4 18 18 C 1.76196 * 102.99969 * 188.05175 * 17 15 13 19 19 C 1.38975 * 120.07993 * 265.40281 * 18 17 15 20 20 C 1.38084 * 119.92170 * 180.29954 * 19 18 17 21 21 C 1.38307 * 120.07682 * 359.97438 * 20 19 18 22 22 C 1.38299 * 120.16183 * 0.02562 * 21 20 19 23 23 C 1.38087 * 120.08214 * 0.02562 * 22 21 20 24 24 C 1.50698 * 109.46979 * 279.99988 * 15 13 4 25 25 C 1.38231 * 120.00241 * 305.42412 * 24 15 13 26 26 C 1.38233 * 120.00158 * 179.78504 * 25 24 15 27 27 C 1.38234 * 119.99687 * 0.45012 * 26 25 24 28 28 C 1.38229 * 120.00348 * 359.80280 * 27 26 25 29 29 C 1.38234 * 119.99870 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.47232 * 282.59050 * 3 2 1 31 31 H 1.09004 * 109.47253 * 162.59312 * 3 2 1 32 32 H 0.97003 * 119.99654 * 179.97438 * 8 7 5 33 33 H 1.08002 * 120.03760 * 0.27090 * 19 18 17 34 34 H 1.07996 * 119.95832 * 179.97438 * 20 19 18 35 35 H 1.07996 * 119.91428 * 179.97438 * 21 20 19 36 36 H 1.08000 * 119.95666 * 180.02562 * 22 21 20 37 37 H 1.07998 * 120.03818 * 179.97438 * 23 22 21 38 38 H 1.08000 * 119.99587 * 0.02562 * 25 24 15 39 39 H 1.08001 * 120.00481 * 180.27435 * 26 25 24 40 40 H 1.08007 * 119.99643 * 179.83174 * 27 26 25 41 41 H 1.08001 * 120.00517 * 179.97438 * 28 27 26 42 42 H 1.08007 * 120.00021 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0968 -1.0160 -0.9347 5 6 3.4232 -2.2667 -0.4780 6 1 4.0695 -2.9038 -1.0636 7 6 2.9226 -2.7147 0.7383 8 7 1.8795 -2.1245 1.2770 9 14 3.7326 -4.1562 1.6077 10 1 5.1492 -3.8232 1.9035 11 1 3.0139 -4.4360 2.8767 12 1 3.6781 -5.3554 0.7336 13 6 3.2255 -0.7217 -2.2436 14 8 3.6298 -1.5635 -3.0176 15 6 2.8672 0.6534 -2.7456 16 1 3.2063 1.4015 -2.0291 17 16 3.6707 0.9412 -4.3463 18 6 3.3432 2.6449 -4.6535 19 6 2.2460 3.0158 -5.4216 20 6 1.9959 4.3517 -5.6655 21 6 2.8355 5.3202 -5.1460 22 6 3.9283 4.9549 -4.3811 23 6 4.1852 3.6208 -4.1340 24 6 1.3724 0.7549 -2.9084 25 6 0.6973 -0.1688 -3.6842 26 6 -0.6743 -0.0782 -3.8299 27 6 -1.3696 0.9415 -3.2074 28 6 -0.6939 1.8682 -2.4358 29 6 0.6771 1.7750 -2.2863 30 1 2.9714 -0.2232 1.0029 31 1 2.9709 0.9815 -0.3074 32 1 1.5298 -2.4375 2.1260 33 1 1.5900 2.2600 -5.8277 34 1 1.1437 4.6406 -6.2627 35 1 2.6377 6.3643 -5.3387 36 1 4.5815 5.7139 -3.9767 37 1 5.0391 3.3363 -3.5370 38 1 1.2411 -0.9634 -4.1733 39 1 -1.2024 -0.8024 -4.4324 40 1 -2.4410 1.0138 -3.3234 41 1 -1.2371 2.6652 -1.9497 42 1 1.2052 2.4993 -1.6838 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004508044.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:41 Heat of formation + Delta-G solvation = 71.114436 kcal Electronic energy + Delta-G solvation = -28687.293935 eV Core-core repulsion = 24917.584891 eV Total energy + Delta-G solvation = -3769.709044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 352.099 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.60074 -38.91570 -38.15277 -35.78548 -34.26616 -32.81595 -31.62331 -31.01229 -30.90330 -30.50823 -27.75544 -27.22859 -24.62313 -22.75578 -22.60983 -22.24096 -21.44751 -19.53422 -17.98374 -17.71886 -16.87699 -16.45680 -16.24276 -15.91263 -15.12829 -14.93648 -14.85239 -14.81679 -14.26642 -14.02689 -13.66620 -13.50581 -13.36897 -13.09294 -13.01091 -12.80230 -12.69312 -12.51017 -12.16372 -11.84856 -11.62582 -11.37970 -11.25126 -11.22525 -11.13817 -10.91722 -10.73439 -10.53417 -10.44714 -10.37497 -10.06712 -9.30503 -9.01420 -8.92427 -8.79921 -8.48568 -8.20083 -8.09078 -7.36024 -6.54011 -4.07553 0.88436 1.33866 1.60366 1.81757 2.03447 2.90444 3.08687 3.19202 3.21796 3.47928 3.72629 3.82298 4.04817 4.15283 4.22318 4.71510 4.81769 4.83485 4.88393 4.99871 5.00556 5.12073 5.22901 5.33384 5.38080 5.41287 5.44931 5.47153 5.56521 5.68585 5.83548 5.93674 5.98116 6.06108 6.28027 6.28492 6.36834 6.38516 6.41824 6.45333 6.79667 6.83406 6.88194 6.94505 7.35722 7.41436 7.79629 8.20145 8.87062 8.91449 9.10586 9.62459 10.50854 Molecular weight = 352.10amu Principal moments of inertia in cm(-1) A = 0.013307 B = 0.004117 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.692869 B = 6799.842812 C = 7699.693810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.242 3.758 3 C 0.221 3.779 4 N -0.429 5.429 5 C -0.312 4.312 6 H 0.109 0.891 7 C 0.035 3.965 8 N -0.874 5.874 9 Si 0.931 3.069 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.478 3.522 14 O -0.553 6.553 15 C -0.052 4.052 16 H 0.102 0.898 17 S -0.079 6.079 18 C -0.126 4.126 19 C -0.061 4.061 20 C -0.131 4.131 21 C -0.101 4.101 22 C -0.132 4.132 23 C -0.074 4.074 24 C -0.069 4.069 25 C -0.085 4.085 26 C -0.120 4.120 27 C -0.113 4.113 28 C -0.107 4.107 29 C -0.102 4.102 30 H 0.126 0.874 31 H 0.076 0.924 32 H 0.275 0.725 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.384 14.392 -7.063 16.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.077 4.077 3 C 0.094 3.906 4 N -0.149 5.149 5 C -0.439 4.439 6 H 0.127 0.873 7 C -0.170 4.170 8 N -0.512 5.512 9 Si 0.757 3.243 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.197 1.197 13 C 0.265 3.735 14 O -0.435 6.435 15 C -0.183 4.183 16 H 0.120 0.880 17 S 0.158 5.842 18 C -0.237 4.237 19 C -0.081 4.081 20 C -0.151 4.151 21 C -0.119 4.119 22 C -0.152 4.152 23 C -0.095 4.095 24 C -0.071 4.071 25 C -0.104 4.104 26 C -0.138 4.138 27 C -0.132 4.132 28 C -0.125 4.125 29 C -0.122 4.122 30 H 0.143 0.857 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.540 13.118 -7.899 15.322 hybrid contribution -0.170 0.244 1.559 1.587 sum -0.710 13.361 -6.340 14.806 Atomic orbital electron populations 1.80866 1.13218 1.10194 1.09235 1.28872 0.95067 0.91417 0.92343 1.18694 0.82483 0.91107 0.98331 1.43469 1.56114 1.11548 1.03755 1.19698 1.28140 0.92131 1.03970 0.87300 1.25328 0.94718 0.99062 0.97879 1.69796 1.19495 1.42434 1.19510 0.85914 0.79188 0.80842 0.78373 1.19579 1.20954 1.19719 1.19001 0.84633 0.87205 0.82710 1.90584 1.49871 1.48965 1.54056 1.22620 0.95458 1.01852 0.98389 0.88021 1.86054 1.70737 1.02011 1.25408 1.22106 0.99134 0.98912 1.03554 1.21615 0.95008 0.96212 0.95312 1.21189 0.99987 0.92912 1.01009 1.21265 0.94657 0.99358 0.96628 1.21175 0.98228 0.95961 0.99857 1.21668 0.98138 0.92390 0.97302 1.19330 0.92499 0.96456 0.98852 1.21015 0.94219 0.97832 0.97314 1.21024 0.94117 0.98238 1.00408 1.21000 0.99214 0.95262 0.97730 1.20829 0.93913 0.99161 0.98617 1.20825 0.94557 0.97619 0.99227 0.85669 0.90664 0.91462 0.85368 0.85914 0.86083 0.85818 0.85187 0.85521 0.86488 0.86794 0.86811 0.87070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.41 17.50 42.15 0.74 -9.67 16 2 C 0.24 5.22 10.34 -20.76 -0.21 5.01 16 3 C 0.22 4.40 4.91 -6.83 -0.03 4.37 16 4 N -0.43 -9.88 2.59 -117.93 -0.31 -10.19 16 5 C -0.31 -7.89 9.30 -14.94 -0.14 -8.03 16 6 H 0.11 2.90 7.40 -52.49 -0.39 2.51 16 7 C 0.03 0.84 4.93 -17.47 -0.09 0.75 16 8 N -0.87 -21.68 9.32 55.50 0.52 -21.17 16 9 Si 0.93 19.41 29.59 -169.99 -5.03 14.38 16 10 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 12 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 13 C 0.48 10.75 6.16 -10.99 -0.07 10.69 16 14 O -0.55 -14.22 15.71 5.55 0.09 -14.13 16 15 C -0.05 -0.95 2.07 -29.03 -0.06 -1.01 16 16 H 0.10 1.64 6.10 -51.92 -0.32 1.32 16 17 S -0.08 -1.35 20.09 -107.50 -2.16 -3.51 16 18 C -0.13 -1.76 5.53 -39.04 -0.22 -1.98 16 19 C -0.06 -0.79 9.79 -39.36 -0.39 -1.17 16 20 C -0.13 -1.40 10.04 -39.61 -0.40 -1.80 16 21 C -0.10 -0.98 10.04 -39.53 -0.40 -1.37 16 22 C -0.13 -1.34 10.04 -39.61 -0.40 -1.74 16 23 C -0.07 -0.90 9.79 -39.36 -0.39 -1.29 16 24 C -0.07 -1.21 3.25 -104.63 -0.34 -1.55 16 25 C -0.08 -1.57 8.97 -39.59 -0.35 -1.92 16 26 C -0.12 -1.97 10.05 -39.58 -0.40 -2.37 16 27 C -0.11 -1.74 10.05 -39.59 -0.40 -2.14 16 28 C -0.11 -1.65 9.69 -39.59 -0.38 -2.04 16 29 C -0.10 -1.65 7.26 -39.58 -0.29 -1.94 16 30 H 0.13 2.53 6.58 -51.93 -0.34 2.18 16 31 H 0.08 1.19 6.16 -51.93 -0.32 0.87 16 32 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 33 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 38 H 0.13 2.55 7.91 -52.49 -0.42 2.13 16 39 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 41 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 42 H 0.11 1.64 7.96 -52.48 -0.42 1.22 16 LS Contribution 373.21 15.07 5.62 5.62 Total: -1.00 -30.19 373.21 -10.19 -40.38 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -4.72 Total: 7.83 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -4.94 Total: -9.55 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.95 Total: -41.03 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: 0.09 Total: -14.13 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Atomic # 16 Polarization: -1.35 SS G_CDS: -2.16 Total: -3.51 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.19 -10.19 -40.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004508044.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.494 kcal (2) G-P(sol) polarization free energy of solvation -30.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds