Wall clock time and date at job start Tue Mar 31 2020 05:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00115 * 2 1 4 4 H 1.48504 * 109.47028 * 240.00000 * 3 2 1 5 5 H 1.48493 * 109.47117 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47119 * 120.00238 * 3 2 1 7 7 C 1.37879 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00091 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99949 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47194 * 179.97438 * 9 7 2 11 11 C 1.34127 * 125.13585 * 124.99895 * 10 9 7 12 12 C 1.37997 * 107.93588 * 180.02562 * 11 10 9 13 13 C 1.47175 * 126.82082 * 179.97438 * 12 11 10 14 14 O 1.21639 * 119.99855 * 180.02562 * 13 12 11 15 15 N 1.34775 * 120.00019 * 0.03847 * 13 12 11 16 16 C 1.39864 * 119.99912 * 174.72435 * 15 13 12 17 17 C 1.38888 * 120.07228 * 326.51700 * 16 15 13 18 18 C 1.38110 * 119.92566 * 179.78748 * 17 16 15 19 19 C 1.38289 * 120.07230 * 0.46525 * 18 17 16 20 20 C 1.38288 * 120.14235 * 359.79175 * 19 18 17 21 21 C 1.38108 * 120.07284 * 359.97136 * 20 19 18 22 22 C 1.46757 * 106.35950 * 359.97438 * 12 11 10 23 23 C 1.47701 * 126.54097 * 179.97438 * 22 12 11 24 24 C 1.34857 * 125.27125 * 145.00384 * 23 22 12 25 25 C 1.37937 * 114.69441 * 179.72857 * 24 23 22 26 26 C 1.33630 * 115.07200 * 0.26978 * 25 24 23 27 27 S 1.75862 * 109.76695 * 359.97438 * 26 25 24 28 28 N 1.31567 * 106.91634 * 0.26382 * 22 12 11 29 29 H 0.97003 * 119.99849 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47283 * 59.99914 * 9 7 2 31 31 H 1.08995 * 109.47540 * 300.00230 * 9 7 2 32 32 H 1.08008 * 126.03280 * 0.04062 * 11 10 9 33 33 H 0.96995 * 120.00224 * 354.73221 * 15 13 12 34 34 H 1.07998 * 120.03854 * 0.02595 * 17 16 15 35 35 H 1.07998 * 119.96860 * 180.23329 * 18 17 16 36 36 H 1.07993 * 119.92871 * 179.76648 * 19 18 17 37 37 H 1.08000 * 119.96091 * 179.97438 * 20 19 18 38 38 H 1.08001 * 120.03532 * 179.97438 * 21 20 19 39 39 H 1.07997 * 122.65339 * 359.97438 * 24 23 22 40 40 H 1.08000 * 122.46174 * 180.29120 * 25 24 23 41 41 H 1.08000 * 125.11982 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 2.2269 -4.6087 0.8963 12 6 3.2615 -5.4582 0.5612 13 6 3.6594 -6.6856 1.2690 14 8 4.5975 -7.3449 0.8629 15 7 2.9843 -7.0793 2.3670 16 6 3.2901 -8.3010 2.9754 17 6 3.7010 -9.3796 2.2028 18 6 4.0064 -10.5833 2.8072 19 6 3.8942 -10.7182 4.1789 20 6 3.4802 -9.6478 4.9503 21 6 3.1779 -8.4399 4.3527 22 6 3.8862 -4.8945 -0.6413 23 6 5.0398 -5.4516 -1.3764 24 6 5.2107 -5.3985 -2.7131 25 6 6.3731 -5.9845 -3.1691 26 6 7.1478 -6.5189 -2.2205 27 16 6.4021 -6.2896 -0.6444 28 7 3.2265 -3.7950 -0.9358 29 1 -0.4850 0.8401 -0.0004 30 1 0.6239 -2.5567 -0.8903 31 1 0.6246 -2.5571 0.8896 32 1 1.5550 -4.7254 1.7338 33 1 2.2863 -6.5155 2.7353 34 1 3.7854 -9.2760 1.1311 35 1 4.3297 -11.4214 2.2075 36 1 4.1300 -11.6616 4.6486 37 1 3.3931 -9.7565 6.0213 38 1 2.8543 -7.6045 4.9558 39 1 4.4960 -4.9305 -3.3738 40 1 6.6378 -6.0092 -4.2159 41 1 8.0905 -7.0161 -2.3953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004516882.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:45 Heat of formation + Delta-G solvation = 103.867482 kcal Electronic energy + Delta-G solvation = -27071.949701 eV Core-core repulsion = 23238.235025 eV Total energy + Delta-G solvation = -3833.714676 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 353.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.85638 -39.96787 -38.12509 -37.30359 -34.70689 -33.90311 -32.16335 -30.96528 -30.83064 -29.28374 -28.85341 -27.01573 -24.33030 -23.86836 -22.91247 -22.51656 -21.60281 -20.44406 -19.83636 -18.50956 -18.12481 -17.12539 -16.91629 -16.50548 -16.14203 -15.55213 -15.26500 -15.08133 -14.66781 -14.40533 -14.28892 -14.01904 -13.85673 -13.36916 -13.25468 -12.85227 -12.81171 -12.66221 -12.33951 -12.13880 -11.95949 -11.81226 -11.72237 -11.32169 -11.16891 -10.97563 -10.57803 -10.42330 -10.38904 -10.18819 -9.95927 -9.66586 -9.26561 -8.98612 -8.77680 -8.43227 -8.14182 -7.89401 -7.78105 -6.40454 -4.46886 1.02178 1.23163 1.34824 1.83747 1.98336 2.40605 2.66918 3.01071 3.17668 3.18163 3.21551 3.23088 3.28921 3.61443 3.87837 4.19436 4.62423 4.80483 4.86753 4.88082 4.97875 5.08416 5.24714 5.31640 5.34757 5.40106 5.53432 5.61074 5.75237 5.80199 5.89671 5.96045 6.27185 6.30513 6.34491 6.42254 6.46383 6.51544 6.63018 6.76054 6.76787 6.90329 7.00895 7.37848 7.45267 7.63245 7.64942 8.16291 8.30670 8.60127 9.20311 10.68456 Molecular weight = 353.09amu Principal moments of inertia in cm(-1) A = 0.009035 B = 0.003238 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3098.420327 B = 8643.966257 C =11161.528131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.066 3.934 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.071 0.929 9 C 0.250 3.750 10 N -0.305 5.305 11 C 0.106 3.894 12 C -0.320 4.320 13 C 0.599 3.401 14 O -0.517 6.517 15 N -0.678 5.678 16 C 0.161 3.839 17 C -0.121 4.121 18 C -0.101 4.101 19 C -0.144 4.144 20 C -0.102 4.102 21 C -0.152 4.152 22 C 0.168 3.832 23 C -0.113 4.113 24 C -0.121 4.121 25 C -0.141 4.141 26 C -0.254 4.254 27 S 0.225 5.775 28 N -0.250 5.250 29 H 0.270 0.730 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.178 0.822 33 H 0.408 0.592 34 H 0.137 0.863 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.139 0.861 40 H 0.133 0.867 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.334 -17.731 5.588 19.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.137 4.137 3 Si 0.736 3.264 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.574 4.574 8 H 0.089 0.911 9 C 0.133 3.867 10 N -0.081 5.081 11 C -0.049 4.049 12 C -0.337 4.337 13 C 0.391 3.609 14 O -0.394 6.394 15 N -0.322 5.322 16 C 0.066 3.934 17 C -0.141 4.141 18 C -0.120 4.120 19 C -0.163 4.163 20 C -0.121 4.121 21 C -0.173 4.173 22 C -0.001 4.001 23 C -0.233 4.233 24 C -0.154 4.154 25 C -0.172 4.172 26 C -0.391 4.391 27 S 0.491 5.509 28 N -0.072 5.072 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.195 0.805 33 H 0.244 0.756 34 H 0.155 0.845 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.156 0.844 40 H 0.151 0.849 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 6.996 -17.240 5.914 19.523 hybrid contribution -0.557 1.083 -0.669 1.390 sum 6.439 -16.157 5.245 18.166 Atomic orbital electron populations 1.69894 1.06074 1.28083 1.48966 1.24924 0.95005 0.99646 0.94172 0.86351 0.79411 0.81477 0.79151 1.19732 1.20909 1.19902 1.21142 0.94032 0.89044 1.53231 0.91119 1.19997 0.85595 0.81188 0.99938 1.49313 1.22746 1.18865 1.17163 1.22922 0.97643 0.89112 0.95246 1.20805 1.06179 1.02450 1.04254 1.17399 0.81127 0.83716 0.78634 1.90742 1.27532 1.55613 1.65510 1.43466 1.39355 1.19898 1.29463 1.17749 0.98838 0.85375 0.91406 1.21230 1.00626 0.91259 1.01018 1.21039 0.99075 0.97114 0.94773 1.21087 1.02170 0.98945 0.94108 1.20897 0.98938 0.92618 0.99623 1.20915 1.04990 0.98831 0.92525 1.20638 0.94194 0.92294 0.92950 1.21743 0.98318 1.07483 0.95725 1.20278 0.98995 1.02314 0.93799 1.19882 0.95122 1.01848 1.00319 1.26112 1.04928 1.09283 0.98787 1.84661 1.09461 1.51415 1.05357 1.77637 1.00703 1.15565 1.13270 0.92031 0.92907 0.92152 0.80498 0.75637 0.84544 0.85965 0.86315 0.85975 0.85815 0.84368 0.84937 0.82485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.93 13.29 55.43 0.74 -23.19 16 2 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -13.99 9.20 -34.44 -0.32 -14.31 16 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.25 5.74 6.21 -5.19 -0.03 5.70 16 10 N -0.31 -6.31 3.62 -62.03 -0.22 -6.54 16 11 C 0.11 1.74 10.88 -16.64 -0.18 1.56 16 12 C -0.32 -5.52 6.32 -102.92 -0.65 -6.17 16 13 C 0.60 9.33 7.54 -12.63 -0.10 9.23 16 14 O -0.52 -8.80 10.64 5.24 0.06 -8.74 16 15 N -0.68 -8.33 5.33 -10.90 -0.06 -8.39 16 16 C 0.16 1.97 6.28 -83.71 -0.53 1.44 16 17 C -0.12 -1.53 8.65 -39.39 -0.34 -1.87 16 18 C -0.10 -1.07 10.04 -39.61 -0.40 -1.46 16 19 C -0.14 -1.34 10.04 -39.54 -0.40 -1.74 16 20 C -0.10 -0.94 10.04 -39.61 -0.40 -1.34 16 21 C -0.15 -1.56 9.96 -39.39 -0.39 -1.95 16 22 C 0.17 3.29 7.24 -80.67 -0.58 2.71 16 23 C -0.11 -2.03 6.11 -36.92 -0.23 -2.26 16 24 C -0.12 -1.98 10.10 -40.89 -0.41 -2.40 16 25 C -0.14 -1.96 10.16 -41.31 -0.42 -2.38 16 26 C -0.25 -3.41 11.22 29.12 0.33 -3.08 16 27 S 0.22 3.53 19.80 -107.50 -2.13 1.40 16 28 N -0.25 -5.48 12.30 34.50 0.42 -5.05 16 29 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.06 1.33 8.05 -51.93 -0.42 0.91 16 32 H 0.18 2.06 7.49 -52.48 -0.39 1.67 16 33 H 0.41 3.89 7.78 -40.82 -0.32 3.57 16 34 H 0.14 1.92 6.42 -52.49 -0.34 1.58 16 35 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 36 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.14 2.23 8.06 -52.49 -0.42 1.81 16 40 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -30.51 371.70 -10.15 -40.65 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -4.39 Total: 5.39 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -5.14 Total: -16.67 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.88 Total: -43.17 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.06 Total: -8.74 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 3.53 SS G_CDS: -2.13 Total: 1.40 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.51 -10.15 -40.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004516882.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.520 kcal (2) G-P(sol) polarization free energy of solvation -30.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds