Wall clock time and date at job start Tue Mar 31 2020 05:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46506 * 109.47289 * 120.00172 * 2 1 3 5 5 C 1.36562 * 119.73050 * 119.99482 * 4 2 1 6 6 S 1.76209 * 118.47198 * 0.02755 * 5 4 2 7 7 C 1.81007 * 99.99654 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.46608 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.46743 * 179.97438 * 8 7 6 10 10 H 1.08006 * 120.00197 * 359.97438 * 9 8 7 11 11 C 1.37883 * 120.00133 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99707 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00144 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47460 * 59.99603 * 13 11 9 15 15 H 1.48494 * 109.47227 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47039 * 299.99774 * 13 11 9 17 17 N 1.31028 * 123.05320 * 179.97438 * 5 4 2 18 18 C 1.35356 * 121.51553 * 0.02562 * 17 5 4 19 19 C 1.39756 * 121.59930 * 180.02562 * 18 17 5 20 20 C 1.37765 * 119.54654 * 179.97438 * 19 18 17 21 21 Cl 1.73597 * 119.60960 * 179.97438 * 20 19 18 22 22 C 1.39070 * 120.78709 * 0.02562 * 20 19 18 23 23 C 1.36678 * 120.72412 * 359.97389 * 22 20 19 24 24 C 1.39430 * 119.68019 * 0.02562 * 23 22 20 25 25 C 1.35307 * 119.72400 * 299.72932 * 4 2 1 26 26 O 1.21735 * 121.21361 * 359.97438 * 25 4 2 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.09004 * 109.47129 * 299.99522 * 7 6 5 35 35 H 1.08994 * 109.47136 * 60.00122 * 7 6 5 36 36 H 1.09004 * 109.46952 * 299.99590 * 8 7 6 37 37 H 1.08994 * 109.47305 * 60.00186 * 8 7 6 38 38 H 0.97001 * 119.99763 * 180.02562 * 12 11 9 39 39 H 1.08001 * 120.23042 * 359.95592 * 19 18 17 40 40 H 1.07999 * 119.63509 * 179.97438 * 22 20 19 41 41 H 1.08000 * 120.15872 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.8031 -1.8005 1.0644 6 16 3.2000 -2.3609 -0.5583 7 6 4.2189 -3.8010 -0.1530 8 6 4.6933 -4.4698 -1.4448 9 6 5.5421 -5.6684 -1.1074 10 1 5.7252 -5.9271 -0.0749 11 6 6.0849 -6.4350 -2.1168 12 7 5.8615 -6.1203 -3.3740 13 14 7.1364 -7.9211 -1.6986 14 1 6.3347 -8.8875 -0.9058 15 1 7.5970 -8.5702 -2.9522 16 1 8.3141 -7.4867 -0.9051 17 7 3.2753 -2.4675 2.0886 18 6 3.0095 -2.0914 3.3614 19 6 3.5127 -2.8012 4.4550 20 6 3.2159 -2.3804 5.7328 21 17 3.8396 -3.2613 7.0925 22 6 2.4218 -1.2590 5.9465 23 6 1.9183 -0.5488 4.8928 24 6 2.2031 -0.9526 3.5890 25 6 1.6926 -0.2204 2.4224 26 8 0.9984 0.7709 2.5539 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 5.0834 -3.4821 0.4293 35 1 3.6304 -4.5103 0.4288 36 1 3.8290 -4.7886 -2.0275 37 1 5.2819 -3.7603 -2.0263 38 1 6.2431 -6.6598 -4.0842 39 1 4.1298 -3.6738 4.2996 40 1 2.2005 -0.9458 6.9562 41 1 1.3022 0.3205 5.0693 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004948622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:14 Heat of formation + Delta-G solvation = -6.107283 kcal Electronic energy + Delta-G solvation = -25809.628193 eV Core-core repulsion = 22034.137714 eV Total energy + Delta-G solvation = -3775.490479 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 352.075 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.80891 -39.11727 -37.62673 -36.83671 -35.43293 -33.82442 -32.40124 -31.08121 -30.94423 -30.21472 -27.46180 -25.54363 -25.37685 -24.70034 -22.38385 -21.67859 -21.38686 -19.22365 -19.08387 -17.39083 -16.66306 -16.36363 -16.28016 -15.78101 -15.38500 -15.08111 -14.57070 -14.45438 -14.20309 -14.09707 -13.95373 -13.78255 -13.64321 -12.94065 -12.88559 -12.74535 -12.29605 -12.22025 -12.20337 -11.86504 -11.84085 -11.56815 -11.41169 -11.25656 -11.07178 -10.74693 -10.51250 -10.37178 -10.19760 -10.04592 -9.90363 -9.75474 -9.26197 -9.16440 -8.69996 -8.49985 -7.61422 -6.15024 -4.19530 0.20512 0.49118 1.09366 1.77031 1.95774 2.22977 2.42114 2.56230 3.27466 3.32098 3.34977 3.68903 3.94387 4.18130 4.36251 4.45702 4.58897 4.73210 4.74024 4.90635 4.94194 5.05750 5.21574 5.29326 5.40439 5.47837 5.59731 5.60468 5.71019 5.87147 5.88620 5.90432 5.91059 6.00483 6.01850 6.10625 6.30089 6.49414 6.58731 7.38307 7.44005 7.51995 7.59331 7.80213 8.15780 8.84727 9.45313 10.95804 Molecular weight = 352.08amu Principal moments of inertia in cm(-1) A = 0.008137 B = 0.003497 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3440.304829 B = 8005.249714 C =11249.188624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.118 3.882 3 C -0.168 4.168 4 N -0.526 5.526 5 C 0.381 3.619 6 S -0.025 6.025 7 C -0.078 4.078 8 C 0.034 3.966 9 C -0.519 4.519 10 H 0.061 0.939 11 C 0.061 3.939 12 N -0.892 5.892 13 Si 0.898 3.102 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.275 1.275 17 N -0.532 5.532 18 C 0.195 3.805 19 C -0.110 4.110 20 C 0.014 3.986 21 Cl -0.060 7.060 22 C -0.147 4.147 23 C -0.021 4.021 24 C -0.213 4.213 25 C 0.559 3.441 26 O -0.508 6.508 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.028 0.972 37 H 0.027 0.973 38 H 0.264 0.736 39 H 0.151 0.849 40 H 0.140 0.860 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.092 12.825 13.176 20.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.016 3.984 3 C -0.226 4.226 4 N -0.250 5.250 5 C 0.009 3.991 6 S 0.213 5.787 7 C -0.226 4.226 8 C -0.005 4.005 9 C -0.560 4.560 10 H 0.079 0.921 11 C -0.141 4.141 12 N -0.530 5.530 13 Si 0.726 3.274 14 H -0.200 1.200 15 H -0.212 1.212 16 H -0.200 1.200 17 N -0.259 5.259 18 C 0.079 3.921 19 C -0.131 4.131 20 C -0.014 4.014 21 Cl -0.031 7.031 22 C -0.167 4.167 23 C -0.041 4.041 24 C -0.221 4.221 25 C 0.352 3.648 26 O -0.384 6.384 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.074 0.926 39 H 0.169 0.831 40 H 0.158 0.842 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.273 13.083 12.062 20.065 hybrid contribution 0.601 -0.845 1.623 1.926 sum -8.672 12.238 13.685 20.304 Atomic orbital electron populations 1.22193 0.92912 1.03121 1.04281 1.21712 0.96286 0.94490 0.85938 1.22199 1.01701 0.94343 1.04318 1.46671 1.44260 1.24911 1.09142 1.25485 0.87281 0.84608 1.01693 1.86030 1.61557 1.35814 0.95275 1.24181 0.99758 0.93206 1.05407 1.19017 0.96938 0.95340 0.89223 1.20990 1.31242 1.10553 0.93183 0.92084 1.24995 0.96352 0.97850 0.94909 1.69944 1.44658 1.39547 0.98877 0.86551 0.80667 0.82504 0.77716 1.20041 1.21181 1.20048 1.69306 1.29119 1.30590 0.96922 1.18623 0.91680 0.90744 0.91017 1.20693 1.02308 1.01637 0.88447 1.20968 0.97525 0.94335 0.88570 1.98391 1.85833 1.75157 1.43700 1.20698 1.00254 0.95475 1.00225 1.20620 0.95656 0.98083 0.89729 1.20630 1.06717 1.00053 0.94689 1.18192 0.80200 0.84223 0.82191 1.90783 1.37376 1.25062 1.85172 0.90384 0.90201 0.92027 0.87128 0.90142 0.92041 0.90389 0.89143 0.89139 0.95419 0.95424 0.92623 0.83102 0.84227 0.83837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 9.13 37.16 0.34 -1.39 16 2 C 0.12 1.36 3.06 -67.93 -0.21 1.15 16 3 C -0.17 -1.74 9.12 37.15 0.34 -1.40 16 4 N -0.53 -7.28 2.57 -110.32 -0.28 -7.57 16 5 C 0.38 5.82 7.78 -88.53 -0.69 5.13 16 6 S -0.02 -0.39 19.63 -107.50 -2.11 -2.50 16 7 C -0.08 -1.48 4.72 37.16 0.18 -1.30 16 8 C 0.03 0.81 4.98 -27.88 -0.14 0.67 16 9 C -0.52 -13.69 9.11 -34.44 -0.31 -14.01 16 10 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 13 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 14 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 N -0.53 -8.57 8.98 -10.79 -0.10 -8.66 16 18 C 0.20 2.87 6.63 -84.55 -0.56 2.31 16 19 C -0.11 -1.43 9.80 -39.19 -0.38 -1.81 16 20 C 0.01 0.16 6.31 -39.45 -0.25 -0.09 16 21 Cl -0.06 -0.61 28.93 -51.86 -1.50 -2.11 16 22 C -0.15 -1.47 9.74 -39.84 -0.39 -1.86 16 23 C -0.02 -0.24 9.62 -39.70 -0.38 -0.62 16 24 C -0.21 -2.95 5.90 -104.75 -0.62 -3.57 16 25 C 0.56 8.06 7.04 -12.52 -0.09 7.98 16 26 O -0.51 -7.57 12.98 5.16 0.07 -7.50 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.93 6.21 -51.93 -0.32 0.61 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.11 1.24 5.65 -44.29 -0.25 0.99 16 31 H 0.08 0.94 6.17 -51.93 -0.32 0.62 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 1.73 8.10 -51.91 -0.42 1.31 16 35 H 0.09 1.73 8.09 -51.92 -0.42 1.31 16 36 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.15 1.91 8.06 -52.49 -0.42 1.48 16 40 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.14 1.41 7.81 -52.49 -0.41 1.00 16 LS Contribution 368.68 15.07 5.56 5.56 Total: -1.00 -28.52 368.68 -10.98 -39.50 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -5.07 Total: -0.53 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -3.26 Total: -7.26 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.36 Total: -40.81 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: 0.07 Total: -7.50 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: -0.39 SS G_CDS: -2.11 Total: -2.50 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.52 -10.98 -39.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004948622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.396 kcal (2) G-P(sol) polarization free energy of solvation -28.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds