Wall clock time and date at job start Tue Mar 31 2020 06:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38334 * 119.87555 * 2 1 4 4 C 1.38008 * 120.12912 * 180.02562 * 3 2 1 5 5 C 1.39378 * 119.87062 * 359.97438 * 4 3 2 6 6 C 1.48297 * 120.12535 * 179.97438 * 5 4 3 7 7 N 1.31365 * 126.50939 * 325.15669 * 6 5 4 8 8 N 1.39776 * 109.07499 * 180.27582 * 7 6 5 9 9 C 1.46495 * 125.15947 * 179.69142 * 8 7 6 10 10 C 1.50708 * 109.47212 * 305.04167 * 9 8 7 11 11 H 1.07992 * 119.99652 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99834 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00284 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99708 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47212 * 90.00105 * 14 12 10 16 16 H 1.48509 * 109.47110 * 209.99740 * 14 12 10 17 17 H 1.48494 * 109.47222 * 329.99488 * 14 12 10 18 18 C 1.34150 * 109.67418 * 359.73015 * 8 7 6 19 19 C 1.37959 * 107.89019 * 359.97438 * 18 8 7 20 20 C 1.47289 * 126.80865 * 179.97438 * 19 18 8 21 21 O 1.21623 * 120.00011 * 138.56107 * 20 19 18 22 22 N 1.34776 * 120.00314 * 318.56560 * 20 19 18 23 23 C 1.46931 * 120.62856 * 354.40338 * 22 20 19 24 24 C 1.53190 * 108.77797 * 233.61383 * 23 22 20 25 25 C 1.53039 * 109.30932 * 305.36374 * 24 23 22 26 26 C 1.53043 * 109.54062 * 61.36787 * 25 24 23 27 27 C 1.46926 * 120.63536 * 174.40706 * 22 20 19 28 28 C 1.39387 * 119.75320 * 0.24909 * 5 4 3 29 29 C 1.38006 * 119.86734 * 359.51831 * 28 5 4 30 30 H 1.08997 * 109.47358 * 89.99759 * 1 2 3 31 31 H 1.09007 * 109.47234 * 210.00000 * 1 2 3 32 32 H 1.09005 * 109.47068 * 329.99501 * 1 2 3 33 33 H 1.08000 * 119.93233 * 359.97438 * 3 2 1 34 34 H 1.07997 * 120.06652 * 179.97438 * 4 3 2 35 35 H 1.09004 * 109.47361 * 65.04049 * 9 8 7 36 36 H 1.09000 * 109.47025 * 185.04240 * 9 8 7 37 37 H 0.97001 * 119.99981 * 180.02562 * 13 12 10 38 38 H 1.08004 * 126.05599 * 179.97438 * 18 8 7 39 39 H 1.09000 * 109.58571 * 113.82143 * 23 22 20 40 40 H 1.09004 * 109.58163 * 353.40320 * 23 22 20 41 41 H 1.08997 * 109.49459 * 185.41288 * 24 23 22 42 42 H 1.08993 * 109.49826 * 65.31539 * 24 23 22 43 43 H 1.09001 * 109.46153 * 181.38883 * 25 24 23 44 44 H 1.09004 * 109.46262 * 301.34845 * 25 24 23 45 45 H 1.08995 * 109.49512 * 58.58156 * 26 25 24 46 46 H 1.08994 * 109.49957 * 178.68589 * 26 25 24 47 47 H 1.08997 * 109.58251 * 6.60357 * 27 22 20 48 48 H 1.08998 * 109.58865 * 246.17775 * 27 22 20 49 49 H 1.07996 * 120.06920 * 179.74688 * 28 5 4 50 50 H 1.08002 * 119.93775 * 180.22742 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1960 1.1995 0.0000 4 6 3.5760 1.2056 -0.0005 5 6 4.2755 0.0001 -0.0005 6 6 5.7585 0.0000 -0.0017 7 7 6.5396 0.8663 -0.6059 8 7 7.8733 0.5191 -0.3728 9 6 9.0366 1.2444 -0.8893 10 6 8.9325 1.3583 -2.3885 11 1 8.0849 0.9326 -2.9047 12 6 9.9200 2.0051 -3.1008 13 7 10.9525 2.5230 -2.4721 14 14 9.7913 2.1456 -4.9591 15 1 9.0657 3.3922 -5.3122 16 1 11.1541 2.1824 -5.5483 17 1 9.0522 0.9741 -5.4941 18 6 7.9263 -0.5796 0.3951 19 6 6.6313 -0.9645 0.6743 20 6 6.2092 -2.1197 1.4847 21 8 5.2830 -2.0091 2.2652 22 7 6.8493 -3.2993 1.3615 23 6 7.8876 -3.4843 0.3384 24 6 7.5397 -4.7185 -0.4997 25 6 7.3485 -5.9217 0.4265 26 6 6.1896 -5.6485 1.3881 27 6 6.5222 -4.4248 2.2476 28 6 3.5760 -1.2055 -0.0053 29 6 2.1960 -1.1994 0.0002 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.6528 2.1330 -0.0004 34 1 4.1130 2.1427 -0.0010 35 1 9.0673 2.2417 -0.4504 36 1 9.9467 0.7044 -0.6283 37 1 11.6470 2.9784 -2.9733 38 1 8.8239 -1.0752 0.7347 39 1 8.8540 -3.6307 0.8209 40 1 7.9274 -2.6051 -0.3047 41 1 8.3499 -4.9231 -1.1995 42 1 6.6184 -4.5349 -1.0525 43 1 7.1250 -6.8067 -0.1692 44 1 8.2619 -6.0895 0.9972 45 1 5.2811 -5.4561 0.8174 46 1 6.0389 -6.5150 2.0318 47 1 5.6612 -4.1662 2.8639 48 1 7.3772 -4.6479 2.8857 49 1 4.1129 -2.1426 -0.0094 50 1 1.6529 -2.1329 0.0002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005000366.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:50 Heat of formation + Delta-G solvation = 32.680191 kcal Electronic energy + Delta-G solvation = -31418.344667 eV Core-core repulsion = 27410.456396 eV Total energy + Delta-G solvation = -4007.888271 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 353.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.24972 -40.61450 -40.05230 -38.16926 -35.81043 -34.52021 -33.96956 -32.75921 -32.35193 -31.90864 -30.97538 -29.36466 -27.68380 -26.51943 -25.03085 -24.23021 -23.79394 -23.29011 -22.38678 -21.52338 -20.93982 -19.98455 -18.73670 -18.18003 -17.72675 -17.03826 -16.78737 -16.49534 -16.29925 -15.95470 -15.81756 -15.66068 -15.37550 -15.00864 -14.85012 -14.59019 -14.52441 -14.36304 -14.24496 -14.18375 -13.92474 -13.81379 -13.59084 -13.21583 -13.09976 -12.96631 -12.87411 -12.72111 -12.32976 -12.22098 -12.19315 -12.04931 -11.82802 -11.78230 -11.65085 -11.56469 -11.45600 -10.88067 -10.78800 -10.58380 -9.88299 -9.74985 -9.50109 -9.10663 -8.37386 -6.50654 0.05468 0.48160 0.72656 1.34699 1.36335 1.39311 1.48273 1.62524 1.97510 2.26588 2.32510 2.88434 2.96067 3.35447 3.62062 3.78853 3.90023 3.93918 4.01287 4.03278 4.06980 4.13381 4.15912 4.26174 4.38669 4.43962 4.49570 4.53013 4.59183 4.64153 4.80674 4.84086 4.86684 4.87412 4.90807 4.93526 4.95195 4.99768 5.08888 5.13814 5.17124 5.21745 5.25734 5.31881 5.47261 5.51268 5.57415 5.62579 5.64962 5.67326 5.77714 6.03070 6.05868 6.39534 6.57290 6.77686 7.19459 7.23887 8.70942 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.006702 B = 0.004053 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4176.903352 B = 6906.629893 C = 9908.402198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.080 4.080 3 C -0.125 4.125 4 C -0.105 4.105 5 C -0.036 4.036 6 C 0.126 3.874 7 N -0.305 5.305 8 N -0.332 5.332 9 C 0.266 3.734 10 C -0.547 4.547 11 H 0.052 0.948 12 C 0.025 3.975 13 N -0.917 5.917 14 Si 0.967 3.033 15 H -0.276 1.276 16 H -0.270 1.270 17 H -0.272 1.272 18 C 0.105 3.895 19 C -0.312 4.312 20 C 0.604 3.396 21 O -0.573 6.573 22 N -0.605 5.605 23 C 0.095 3.905 24 C -0.133 4.133 25 C -0.114 4.114 26 C -0.128 4.128 27 C 0.109 3.891 28 C -0.081 4.081 29 C -0.125 4.125 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.149 0.851 34 H 0.114 0.886 35 H 0.024 0.976 36 H 0.067 0.933 37 H 0.273 0.727 38 H 0.211 0.789 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.048 0.952 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.051 0.949 46 H 0.096 0.904 47 H 0.074 0.926 48 H 0.085 0.915 49 H 0.107 0.893 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.501 -16.154 6.408 20.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.081 4.081 3 C -0.143 4.143 4 C -0.124 4.124 5 C -0.038 4.038 6 C -0.041 4.041 7 N -0.125 5.125 8 N -0.109 5.109 9 C 0.148 3.852 10 C -0.585 4.585 11 H 0.070 0.930 12 C -0.176 4.176 13 N -0.556 5.556 14 Si 0.791 3.209 15 H -0.202 1.202 16 H -0.195 1.195 17 H -0.196 1.196 18 C -0.046 4.046 19 C -0.327 4.327 20 C 0.394 3.606 21 O -0.453 6.453 22 N -0.338 5.338 23 C -0.027 4.027 24 C -0.171 4.171 25 C -0.151 4.151 26 C -0.166 4.166 27 C -0.013 4.013 28 C -0.101 4.101 29 C -0.143 4.143 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.167 0.833 34 H 0.132 0.868 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.227 0.773 39 H 0.110 0.890 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.067 0.933 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.069 0.931 46 H 0.114 0.886 47 H 0.093 0.907 48 H 0.103 0.897 49 H 0.125 0.875 50 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.557 -14.851 6.000 19.752 hybrid contribution 0.717 0.034 -0.454 0.850 sum -10.840 -14.818 5.546 19.179 Atomic orbital electron populations 1.20851 0.88238 1.04024 1.03430 1.20393 0.98059 0.92275 0.97329 1.21217 0.92651 0.99269 1.01148 1.21273 0.95375 0.96580 0.99204 1.17887 0.87078 0.95004 1.03872 1.22167 0.93629 0.92392 0.95884 1.77355 0.87990 1.23559 1.23638 1.48955 1.05608 1.20820 1.35540 1.19518 0.79229 0.91799 0.94697 1.21310 1.07565 1.38245 0.91420 0.92983 1.25643 0.94276 0.94027 1.03682 1.69977 1.10773 1.36801 1.38022 0.85416 0.77888 0.78627 0.78935 1.20207 1.19481 1.19629 1.23402 0.99107 0.89351 0.92759 1.21119 0.91875 1.04124 1.15615 1.17158 0.80987 0.81932 0.80537 1.90713 1.30422 1.84609 1.39558 1.48011 1.39153 1.11105 1.35494 1.22094 0.90846 0.99674 0.90090 1.21899 1.02199 0.94768 0.98255 1.21508 0.98878 0.97311 0.97410 1.21881 0.98646 0.97432 0.98632 1.21744 1.01904 0.85216 0.92413 1.20991 0.95042 0.95832 0.98204 1.21178 0.92724 0.99162 1.01221 0.89847 0.90268 0.90267 0.83287 0.86809 0.95806 0.91502 0.91744 0.77254 0.88972 0.90804 0.89309 0.93280 0.90527 0.90294 0.93062 0.88579 0.90743 0.89662 0.87488 0.83470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 10.01 71.23 0.71 -0.98 16 2 C -0.08 -1.96 5.88 -19.82 -0.12 -2.07 16 3 C -0.13 -3.43 9.68 22.24 0.22 -3.21 16 4 C -0.10 -3.69 9.76 22.49 0.22 -3.47 16 5 C -0.04 -1.41 5.76 -20.05 -0.12 -1.53 16 6 C 0.13 5.43 6.94 44.07 0.31 5.74 16 7 N -0.30 -14.58 12.27 -44.53 -0.55 -15.13 16 8 N -0.33 -15.04 3.62 -350.18 -1.27 -16.31 16 9 C 0.27 13.18 6.21 85.64 0.53 13.71 16 10 C -0.55 -29.88 9.21 25.60 0.24 -29.65 16 11 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 12 C 0.02 1.33 5.46 84.65 0.46 1.79 16 13 N -0.92 -50.41 13.29 21.45 0.28 -50.12 16 14 Si 0.97 42.72 29.54 68.60 2.03 44.74 16 15 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 16 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 18 C 0.11 3.89 9.03 84.27 0.76 4.65 16 19 C -0.31 -11.97 5.31 -18.78 -0.10 -12.07 16 20 C 0.60 21.00 6.17 86.62 0.53 21.53 16 21 O -0.57 -22.95 15.26 -4.10 -0.06 -23.02 16 22 N -0.60 -15.77 2.97 -822.92 -2.45 -18.22 16 23 C 0.10 2.09 5.53 86.36 0.48 2.57 16 24 C -0.13 -2.43 6.08 30.67 0.19 -2.25 16 25 C -0.11 -1.57 5.88 30.62 0.18 -1.39 16 26 C -0.13 -2.00 6.08 30.67 0.19 -1.82 16 27 C 0.11 2.23 6.44 86.36 0.56 2.79 16 28 C -0.08 -2.76 8.39 22.49 0.19 -2.58 16 29 C -0.13 -3.39 9.68 22.24 0.22 -3.18 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.04 8.08 -2.38 -0.02 1.02 16 32 H 0.08 1.04 8.08 -2.38 -0.02 1.02 16 33 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 34 H 0.11 4.15 8.06 -2.91 -0.02 4.13 16 35 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 3.15 8.05 -2.39 -0.02 3.13 16 37 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 38 H 0.21 5.88 7.43 -2.91 -0.02 5.86 16 39 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.07 1.99 4.87 -2.38 -0.01 1.98 16 41 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 45 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.10 1.07 8.14 -2.39 -0.02 1.06 16 47 H 0.07 1.81 6.99 -2.39 -0.02 1.80 16 48 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.11 3.74 6.76 -2.91 -0.02 3.72 16 50 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -70.64 407.75 4.56 -66.08 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.94 Total: 23.41 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: 5.64 Total: -11.42 kcal Atomic # 7 Polarization: -95.81 SS G_CDS: -3.98 Total: -99.78 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.06 Total: -23.02 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -70.64 4.56 -66.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005000366.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.756 kcal (2) G-P(sol) polarization free energy of solvation -70.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds