Wall clock time and date at job start Tue Mar 31 2020 05:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47039 * 2 1 4 4 N 1.46498 * 109.46982 * 179.97438 * 3 2 1 5 5 C 1.36571 * 119.72752 * 89.99894 * 4 3 2 6 6 S 1.76199 * 118.47445 * 359.97438 * 5 4 3 7 7 C 1.81002 * 100.00182 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47085 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.46615 * 180.02562 * 8 7 6 10 10 H 1.07991 * 120.00439 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99466 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00156 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99470 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47403 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46873 * 119.99891 * 13 11 9 16 16 H 1.48500 * 109.47022 * 239.99511 * 13 11 9 17 17 N 1.31025 * 123.05076 * 180.27662 * 5 4 3 18 18 C 1.35361 * 121.51509 * 359.48532 * 17 5 4 19 19 C 1.39758 * 121.59398 * 180.25519 * 18 17 5 20 20 C 1.37768 * 119.53927 * 180.28707 * 19 18 17 21 21 Cl 1.73605 * 119.60633 * 179.97438 * 20 19 18 22 22 C 1.39062 * 120.78810 * 359.95448 * 20 19 18 23 23 C 1.36678 * 120.73092 * 0.02562 * 22 20 19 24 24 C 1.39428 * 119.67312 * 0.02562 * 23 22 20 25 25 C 1.35306 * 119.72931 * 270.02234 * 4 3 2 26 26 O 1.21728 * 121.21068 * 359.95509 * 25 4 3 27 27 H 1.08999 * 109.46831 * 300.00410 * 1 2 3 28 28 H 1.09003 * 109.46991 * 60.00413 * 1 2 3 29 29 H 1.09000 * 109.47271 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46831 * 239.99590 * 2 1 3 31 31 H 1.08994 * 109.46865 * 119.99829 * 2 1 3 32 32 H 1.09001 * 109.47349 * 59.99370 * 3 2 1 33 33 H 1.09003 * 109.46892 * 299.99648 * 3 2 1 34 34 H 1.09005 * 109.46889 * 299.99975 * 7 6 5 35 35 H 1.09000 * 109.47231 * 59.99947 * 7 6 5 36 36 H 1.09001 * 109.47131 * 299.99123 * 8 7 6 37 37 H 1.08996 * 109.47558 * 60.00200 * 8 7 6 38 38 H 0.97000 * 119.99592 * 179.97438 * 12 11 9 39 39 H 1.07996 * 120.23317 * 0.24326 * 19 18 17 40 40 H 1.08002 * 119.63296 * 180.02562 * 22 20 19 41 41 H 1.07998 * 120.16531 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1827 1.4423 -1.1851 6 16 3.2549 1.4413 -2.6830 7 6 4.6048 1.4406 -3.8889 8 6 4.0241 1.4403 -5.3044 9 6 5.1481 1.4391 -6.3083 10 1 6.1738 1.4389 -5.9705 11 6 4.8666 1.4381 -7.6581 12 7 3.6175 1.4378 -8.0694 13 14 6.2598 1.4373 -8.9025 14 1 7.5616 1.4372 -8.1881 15 1 6.1627 0.2241 -9.7535 16 1 6.1626 2.6491 -9.7553 17 7 5.4908 1.4369 -1.2605 18 6 6.2636 1.4416 -0.1492 19 6 7.6590 1.4412 -0.2277 20 6 8.4045 1.4400 0.9308 21 17 10.1379 1.4389 0.8353 22 6 7.7851 1.4402 2.1759 23 6 6.4221 1.4410 2.2779 24 6 5.6434 1.4411 1.1213 25 6 4.1755 1.4422 1.1759 26 8 3.5838 1.4427 2.2397 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 5.2181 2.3307 -3.7482 35 1 5.2181 0.5507 -3.7472 36 1 3.4107 0.5504 -5.4453 37 1 3.4111 2.3304 -5.4458 38 1 3.4196 1.4375 -9.0190 39 1 8.1495 1.4411 -1.1899 40 1 8.3877 1.4397 3.0721 41 1 5.9506 1.4406 3.2495 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005568357.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:17 Heat of formation + Delta-G solvation = -12.753267 kcal Electronic energy + Delta-G solvation = -25541.652876 eV Core-core repulsion = 21765.874206 eV Total energy + Delta-G solvation = -3775.778670 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 352.075 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.71165 -38.99384 -37.66375 -36.81068 -35.40496 -33.83624 -32.98722 -31.33208 -31.07430 -30.25587 -27.12419 -25.55142 -25.16461 -24.02055 -22.33970 -21.86898 -21.38655 -19.23085 -19.07257 -17.70939 -16.68860 -16.39373 -16.28611 -15.72207 -15.47765 -15.16198 -15.01566 -14.56713 -14.20899 -14.08411 -13.99745 -13.77948 -13.55527 -13.04756 -12.76469 -12.56888 -12.49311 -12.25960 -12.21723 -11.87614 -11.79907 -11.44590 -11.27745 -11.10927 -11.00040 -10.75336 -10.51778 -10.39291 -10.24948 -10.16143 -10.03334 -9.76938 -9.25210 -9.17419 -8.72051 -8.51443 -7.60866 -6.15974 -4.20254 0.19355 0.48166 1.09006 1.76481 1.94553 2.22288 2.41096 2.58818 3.24364 3.32638 3.36946 3.67840 3.95618 4.17178 4.35780 4.45753 4.63133 4.65795 4.74204 4.90562 4.94889 5.07844 5.18672 5.20914 5.30566 5.49757 5.57099 5.60953 5.77630 5.82618 5.86927 5.89372 5.90629 5.94031 6.07311 6.09474 6.24705 6.42770 6.57852 7.37821 7.43120 7.47578 7.57912 7.79776 8.15045 8.84589 9.44791 10.94921 Molecular weight = 352.08amu Principal moments of inertia in cm(-1) A = 0.007453 B = 0.003562 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3756.134133 B = 7859.433679 C =11453.080816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.140 4.140 3 C 0.089 3.911 4 N -0.529 5.529 5 C 0.380 3.620 6 S -0.020 6.020 7 C -0.078 4.078 8 C 0.034 3.966 9 C -0.518 4.518 10 H 0.062 0.938 11 C 0.061 3.939 12 N -0.892 5.892 13 Si 0.897 3.103 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.283 1.283 17 N -0.532 5.532 18 C 0.195 3.805 19 C -0.109 4.109 20 C 0.015 3.985 21 Cl -0.060 7.060 22 C -0.146 4.146 23 C -0.021 4.021 24 C -0.212 4.212 25 C 0.557 3.443 26 O -0.512 6.512 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.263 0.737 39 H 0.152 0.848 40 H 0.140 0.860 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.406 -0.672 19.719 19.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.178 4.178 3 C -0.033 4.033 4 N -0.252 5.252 5 C 0.008 3.992 6 S 0.218 5.782 7 C -0.226 4.226 8 C -0.006 4.006 9 C -0.558 4.558 10 H 0.080 0.920 11 C -0.141 4.141 12 N -0.530 5.530 13 Si 0.725 3.275 14 H -0.195 1.195 15 H -0.209 1.209 16 H -0.209 1.209 17 N -0.259 5.259 18 C 0.080 3.920 19 C -0.131 4.131 20 C -0.014 4.014 21 Cl -0.030 7.030 22 C -0.166 4.166 23 C -0.041 4.041 24 C -0.220 4.220 25 C 0.349 3.651 26 O -0.388 6.388 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.169 0.831 40 H 0.158 0.842 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.329 -0.670 19.343 19.358 hybrid contribution 1.906 0.016 0.177 1.914 sum 2.236 -0.654 19.520 19.659 Atomic orbital electron populations 1.21660 0.93978 1.02490 1.02305 1.21870 0.97260 0.95268 1.03418 1.22180 0.75953 0.99750 1.05427 1.46516 1.09688 1.63495 1.05518 1.25494 0.91954 0.90129 0.91578 1.86109 1.13715 1.87085 0.91263 1.24167 0.95908 1.06366 0.96170 1.19027 0.97151 0.98579 0.85821 1.21066 0.92595 1.51825 0.90350 0.91971 1.24999 0.95741 0.94862 0.98547 1.69961 1.17690 1.49974 1.15369 0.86446 0.82229 0.77707 0.81138 1.19522 1.20872 1.20866 1.69308 1.00676 1.27610 1.28319 1.18619 0.93306 0.92668 0.87433 1.20695 0.90893 1.02953 0.98520 1.20971 0.85039 1.00691 0.94666 1.98392 1.09422 1.96546 1.98689 1.20697 0.94494 1.05046 0.96380 1.20625 0.92447 0.93166 0.97842 1.20584 0.92641 1.13359 0.95427 1.18259 0.87539 0.76338 0.82953 1.90840 1.70511 1.49466 1.27945 0.92476 0.91851 0.91955 0.90478 0.91427 0.88019 0.87897 0.89150 0.89103 0.95401 0.95416 0.92737 0.83071 0.84194 0.83831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.16 0.37 -0.84 16 2 C -0.14 -1.44 6.26 -26.73 -0.17 -1.61 16 3 C 0.09 1.00 4.88 -4.04 -0.02 0.98 16 4 N -0.53 -7.31 2.62 -117.43 -0.31 -7.62 16 5 C 0.38 5.73 7.78 -88.53 -0.69 5.05 16 6 S -0.02 -0.31 19.81 -107.50 -2.13 -2.44 16 7 C -0.08 -1.47 4.72 37.16 0.18 -1.30 16 8 C 0.03 0.79 4.98 -27.88 -0.14 0.65 16 9 C -0.52 -13.59 9.11 -34.44 -0.31 -13.90 16 10 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.89 -25.20 13.29 55.43 0.74 -24.47 16 13 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 14 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 N -0.53 -8.50 8.98 -10.79 -0.10 -8.60 16 18 C 0.20 2.87 6.63 -84.55 -0.56 2.31 16 19 C -0.11 -1.42 9.80 -39.19 -0.38 -1.80 16 20 C 0.01 0.16 6.31 -39.45 -0.25 -0.09 16 21 Cl -0.06 -0.60 28.93 -51.86 -1.50 -2.10 16 22 C -0.15 -1.48 9.74 -39.84 -0.39 -1.86 16 23 C -0.02 -0.24 9.62 -39.70 -0.38 -0.62 16 24 C -0.21 -2.97 5.90 -104.76 -0.62 -3.58 16 25 C 0.56 8.21 7.65 -12.52 -0.10 8.11 16 26 O -0.51 -8.11 16.29 5.16 0.08 -8.02 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.85 8.06 -51.93 -0.42 0.43 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 1.09 7.46 -51.93 -0.39 0.71 16 33 H 0.10 1.07 6.48 -51.93 -0.34 0.74 16 34 H 0.09 1.71 8.10 -51.91 -0.42 1.29 16 35 H 0.09 1.72 8.09 -51.92 -0.42 1.30 16 36 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 40 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.14 1.44 7.81 -52.49 -0.41 1.03 16 LS Contribution 376.53 15.07 5.67 5.67 Total: -1.00 -28.86 376.53 -11.44 -40.30 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -5.32 Total: -1.33 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -3.56 Total: -6.97 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.33 Total: -40.69 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: 0.08 Total: -8.02 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -2.13 Total: -2.44 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.10 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.86 -11.44 -40.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005568357.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.546 kcal (2) G-P(sol) polarization free energy of solvation -28.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds