Wall clock time and date at job start Tue Mar 31 2020 05:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47039 * 2 1 4 4 N 1.46498 * 109.46982 * 179.97438 * 3 2 1 5 5 C 1.36571 * 119.72752 * 89.99894 * 4 3 2 6 6 S 1.76199 * 118.47445 * 359.97438 * 5 4 3 7 7 C 1.81002 * 100.00182 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47085 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.46615 * 180.02562 * 8 7 6 10 10 H 1.07991 * 120.00439 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99466 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00156 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99470 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47403 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46873 * 119.99891 * 13 11 9 16 16 H 1.48500 * 109.47022 * 239.99511 * 13 11 9 17 17 N 1.31025 * 123.05076 * 180.27662 * 5 4 3 18 18 C 1.35361 * 121.51509 * 359.48532 * 17 5 4 19 19 C 1.39758 * 121.59398 * 180.25519 * 18 17 5 20 20 C 1.37768 * 119.53927 * 180.28707 * 19 18 17 21 21 Cl 1.73605 * 119.60633 * 179.97438 * 20 19 18 22 22 C 1.39062 * 120.78810 * 359.95448 * 20 19 18 23 23 C 1.36678 * 120.73092 * 0.02562 * 22 20 19 24 24 C 1.39428 * 119.67312 * 0.02562 * 23 22 20 25 25 C 1.35306 * 119.72931 * 270.02234 * 4 3 2 26 26 O 1.21728 * 121.21068 * 359.95509 * 25 4 3 27 27 H 1.08999 * 109.46831 * 300.00410 * 1 2 3 28 28 H 1.09003 * 109.46991 * 60.00413 * 1 2 3 29 29 H 1.09000 * 109.47271 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46831 * 239.99590 * 2 1 3 31 31 H 1.08994 * 109.46865 * 119.99829 * 2 1 3 32 32 H 1.09001 * 109.47349 * 59.99370 * 3 2 1 33 33 H 1.09003 * 109.46892 * 299.99648 * 3 2 1 34 34 H 1.09005 * 109.46889 * 299.99975 * 7 6 5 35 35 H 1.09000 * 109.47231 * 59.99947 * 7 6 5 36 36 H 1.09001 * 109.47131 * 299.99123 * 8 7 6 37 37 H 1.08996 * 109.47558 * 60.00200 * 8 7 6 38 38 H 0.97000 * 119.99592 * 179.97438 * 12 11 9 39 39 H 1.07996 * 120.23317 * 0.24326 * 19 18 17 40 40 H 1.08002 * 119.63296 * 180.02562 * 22 20 19 41 41 H 1.07998 * 120.16531 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1827 1.4423 -1.1851 6 16 3.2549 1.4413 -2.6830 7 6 4.6048 1.4406 -3.8889 8 6 4.0241 1.4403 -5.3044 9 6 5.1481 1.4391 -6.3083 10 1 6.1738 1.4389 -5.9705 11 6 4.8666 1.4381 -7.6581 12 7 3.6175 1.4378 -8.0694 13 14 6.2598 1.4373 -8.9025 14 1 7.5616 1.4372 -8.1881 15 1 6.1627 0.2241 -9.7535 16 1 6.1626 2.6491 -9.7553 17 7 5.4908 1.4369 -1.2605 18 6 6.2636 1.4416 -0.1492 19 6 7.6590 1.4412 -0.2277 20 6 8.4045 1.4400 0.9308 21 17 10.1379 1.4389 0.8353 22 6 7.7851 1.4402 2.1759 23 6 6.4221 1.4410 2.2779 24 6 5.6434 1.4411 1.1213 25 6 4.1755 1.4422 1.1759 26 8 3.5838 1.4427 2.2397 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 5.2181 2.3307 -3.7482 35 1 5.2181 0.5507 -3.7472 36 1 3.4107 0.5504 -5.4453 37 1 3.4111 2.3304 -5.4458 38 1 3.4196 1.4375 -9.0190 39 1 8.1495 1.4411 -1.1899 40 1 8.3877 1.4397 3.0721 41 1 5.9506 1.4406 3.2495 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005568357.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:17 Heat of formation + Delta-G solvation = -25.090169 kcal Electronic energy + Delta-G solvation = -25542.187845 eV Core-core repulsion = 21765.874206 eV Total energy + Delta-G solvation = -3776.313638 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 352.075 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.79024 -39.98559 -38.78250 -37.70151 -36.38271 -35.74351 -33.93611 -32.93058 -32.28406 -31.34231 -28.01213 -27.34472 -26.36799 -25.00409 -23.50275 -23.03074 -22.69820 -20.35022 -20.12792 -18.78242 -18.65784 -17.50864 -17.37565 -16.73122 -16.51330 -16.44131 -16.20183 -15.93175 -15.64633 -15.24878 -15.16652 -14.93560 -14.62550 -14.11982 -14.06206 -13.78590 -13.56900 -13.41535 -13.25033 -13.09507 -12.95544 -12.70334 -12.49217 -12.33541 -12.14751 -12.12556 -11.95001 -11.80329 -11.72087 -11.40812 -11.21058 -11.13702 -11.09848 -10.57795 -10.12866 -9.84224 -8.78616 -8.21295 -6.32092 -0.85178 -0.53013 -0.15104 0.85343 0.86299 0.99637 1.34885 1.39778 1.43289 1.45671 1.57467 2.43287 2.64228 2.89491 3.12449 3.13708 3.49161 3.72791 3.80568 3.87347 3.95293 4.04992 4.20699 4.28557 4.36526 4.39332 4.44073 4.62836 4.66253 4.78343 4.86502 4.90558 4.95550 4.97883 5.07751 5.11248 5.26004 5.36853 5.42061 5.43402 5.50118 5.76674 6.14844 6.36360 6.45093 6.81077 7.37096 8.90284 Molecular weight = 352.08amu Principal moments of inertia in cm(-1) A = 0.007453 B = 0.003562 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3756.134133 B = 7859.433679 C =11453.080816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.084 3.916 4 N -0.527 5.527 5 C 0.372 3.628 6 S 0.016 5.984 7 C -0.073 4.073 8 C 0.041 3.959 9 C -0.536 4.536 10 H 0.064 0.936 11 C 0.008 3.992 12 N -0.928 5.928 13 Si 0.962 3.038 14 H -0.263 1.263 15 H -0.279 1.279 16 H -0.279 1.279 17 N -0.548 5.548 18 C 0.170 3.830 19 C -0.117 4.117 20 C 0.017 3.983 21 Cl -0.045 7.045 22 C -0.127 4.127 23 C -0.021 4.021 24 C -0.224 4.224 25 C 0.552 3.448 26 O -0.528 6.528 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.265 0.735 39 H 0.149 0.851 40 H 0.174 0.826 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.609 -0.663 21.331 21.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C -0.037 4.037 4 N -0.250 5.250 5 C -0.001 4.001 6 S 0.253 5.747 7 C -0.222 4.222 8 C 0.001 3.999 9 C -0.576 4.576 10 H 0.082 0.918 11 C -0.191 4.191 12 N -0.567 5.567 13 Si 0.787 3.213 14 H -0.187 1.187 15 H -0.205 1.205 16 H -0.204 1.204 17 N -0.275 5.275 18 C 0.056 3.944 19 C -0.139 4.139 20 C -0.011 4.011 21 Cl -0.016 7.016 22 C -0.146 4.146 23 C -0.040 4.040 24 C -0.232 4.232 25 C 0.346 3.654 26 O -0.405 6.405 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.074 0.926 39 H 0.167 0.833 40 H 0.192 0.808 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.554 -0.661 20.964 21.032 hybrid contribution 1.615 0.013 -0.166 1.624 sum 3.169 -0.649 20.798 21.048 Atomic orbital electron populations 1.21654 0.92189 1.03216 1.03002 1.21834 0.98741 0.94314 1.02450 1.22395 0.74673 1.00576 1.06053 1.46558 1.10546 1.62956 1.04903 1.25299 0.91931 0.91163 0.91715 1.85815 1.10884 1.87813 0.90165 1.23708 0.97086 1.06053 0.95312 1.18780 0.96082 0.96600 0.88391 1.21499 0.93480 1.51220 0.91397 0.91759 1.25854 0.98055 0.94522 1.00622 1.70070 1.19660 1.51135 1.15869 0.85431 0.79473 0.77745 0.78621 1.18659 1.20460 1.20446 1.69217 1.01241 1.27446 1.29640 1.18768 0.93859 0.94392 0.87401 1.20759 0.90462 1.03361 0.99273 1.21080 0.85738 0.99725 0.94582 1.98403 1.08141 1.96380 1.98684 1.21061 0.94207 1.02310 0.97063 1.20872 0.92881 0.92595 0.97694 1.20746 0.92516 1.13815 0.96080 1.18436 0.87999 0.76129 0.82883 1.90822 1.70874 1.50510 1.28248 0.91577 0.91357 0.91246 0.91418 0.92371 0.87311 0.87199 0.89466 0.89445 0.97298 0.97303 0.92573 0.83293 0.80831 0.82181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.91 71.98 0.71 -1.46 16 2 C -0.13 -2.71 6.26 30.60 0.19 -2.52 16 3 C 0.08 1.83 4.88 86.38 0.42 2.26 16 4 N -0.53 -14.41 2.62 -643.34 -1.69 -16.09 16 5 C 0.37 11.23 7.78 179.62 1.40 12.63 16 6 S 0.02 0.48 19.81 -56.49 -1.12 -0.64 16 7 C -0.07 -2.82 4.72 71.98 0.34 -2.48 16 8 C 0.04 1.97 4.98 29.85 0.15 2.12 16 9 C -0.54 -28.62 9.11 25.60 0.23 -28.39 16 10 H 0.06 3.32 7.74 -2.92 -0.02 3.30 16 11 C 0.01 0.46 5.46 84.66 0.46 0.92 16 12 N -0.93 -53.40 13.29 21.45 0.28 -53.12 16 13 Si 0.96 42.38 29.54 68.60 2.03 44.41 16 14 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 15 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 16 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 17 N -0.55 -17.64 8.98 -188.06 -1.69 -19.32 16 18 C 0.17 4.95 6.63 39.74 0.26 5.21 16 19 C -0.12 -2.95 9.80 22.53 0.22 -2.73 16 20 C 0.02 0.35 6.31 22.36 0.14 0.49 16 21 Cl -0.05 -0.81 28.93 -2.72 -0.08 -0.89 16 22 C -0.13 -2.18 9.74 22.10 0.22 -1.97 16 23 C -0.02 -0.43 9.62 22.19 0.21 -0.22 16 24 C -0.22 -6.06 5.90 -19.95 -0.12 -6.17 16 25 C 0.55 15.97 7.65 86.42 0.66 16.64 16 26 O -0.53 -16.26 16.29 -4.44 -0.07 -16.33 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 1.48 8.06 -2.39 -0.02 1.46 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.11 2.24 7.46 -2.39 -0.02 2.22 16 33 H 0.11 2.21 6.48 -2.39 -0.02 2.20 16 34 H 0.09 3.38 8.10 -2.39 -0.02 3.36 16 35 H 0.09 3.40 8.09 -2.40 -0.02 3.38 16 36 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.01 0.44 8.14 -2.39 -0.02 0.43 16 38 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 39 H 0.15 3.72 8.06 -2.91 -0.02 3.69 16 40 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 41 H 0.16 2.78 7.81 -2.91 -0.02 2.75 16 Total: -1.00 -62.27 376.53 4.22 -58.05 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 1.05 Total: 9.62 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 5.50 Total: -5.68 kcal Atomic # 7 Polarization: -85.44 SS G_CDS: -3.09 Total: -88.53 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.07 Total: -16.33 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: 0.48 SS G_CDS: -1.12 Total: -0.64 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -62.27 4.22 -58.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005568357.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.957 kcal (2) G-P(sol) polarization free energy of solvation -62.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds