Wall clock time and date at job start Tue Mar 31 2020 05:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38145 * 120.03704 * 2 1 4 4 C 1.38251 * 120.06721 * 179.97438 * 3 2 1 5 5 C 1.38301 * 120.13491 * 0.02568 * 4 3 2 6 6 C 1.38095 * 120.06454 * 359.69639 * 5 4 3 7 7 C 1.38812 * 120.03477 * 179.97438 * 2 1 3 8 8 N 1.40182 * 120.06360 * 359.97438 * 7 2 1 9 9 C 1.36810 * 127.20526 * 270.02881 * 8 7 2 10 10 S 1.76198 * 126.40040 * 359.97438 * 9 8 7 11 11 C 1.81004 * 100.00223 * 179.97438 * 10 9 8 12 12 C 1.50695 * 109.46925 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00440 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99937 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99753 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00102 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47359 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47190 * 119.99674 * 16 14 12 19 19 H 1.48502 * 109.47174 * 239.99708 * 16 14 12 20 20 N 1.31454 * 107.20650 * 179.97438 * 9 8 7 21 21 N 1.28503 * 110.13538 * 359.97438 * 20 9 8 22 22 C 1.31286 * 110.02236 * 0.02562 * 21 20 9 23 23 C 1.47816 * 126.47502 * 179.97438 * 22 21 20 24 24 C 1.40009 * 120.55941 * 345.04051 * 23 22 21 25 25 C 1.38359 * 118.28489 * 179.97438 * 24 23 22 26 26 C 1.38347 * 119.30859 * 359.97438 * 25 24 23 27 27 N 1.31913 * 121.08737 * 0.02625 * 26 25 24 28 28 C 1.31702 * 121.87784 * 359.67969 * 27 26 25 29 29 H 1.08992 * 109.47467 * 270.02374 * 1 2 3 30 30 H 1.09004 * 109.47369 * 30.02084 * 1 2 3 31 31 H 1.09001 * 109.47239 * 150.01869 * 1 2 3 32 32 H 1.08005 * 119.96135 * 0.02562 * 3 2 1 33 33 H 1.08005 * 119.92918 * 180.02562 * 4 3 2 34 34 H 1.08000 * 119.96633 * 179.97438 * 5 4 3 35 35 H 1.08004 * 120.03542 * 180.30454 * 6 5 4 36 36 H 1.08999 * 109.46814 * 299.99739 * 11 10 9 37 37 H 1.09000 * 109.47071 * 60.00061 * 11 10 9 38 38 H 0.96999 * 119.99854 * 180.02562 * 15 14 12 39 39 H 1.07995 * 120.85995 * 359.97438 * 24 23 22 40 40 H 1.08001 * 120.34197 * 180.02562 * 25 24 23 41 41 H 1.08005 * 119.45577 * 180.02562 * 26 25 24 42 42 H 1.08000 * 119.72175 * 180.29050 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5809 1.1967 0.0005 5 6 4.2759 0.0009 0.0005 6 6 3.5902 -1.1978 0.0063 7 6 2.2017 -1.2017 0.0005 8 7 1.5029 -2.4169 0.0016 9 6 1.0904 -3.1331 1.0919 10 16 1.3388 -2.7007 2.7819 11 6 0.5295 -4.1049 3.5878 12 6 0.6198 -3.9458 5.0837 13 1 1.1159 -3.0846 5.5062 14 6 0.0700 -4.9004 5.9129 15 7 -0.5336 -5.9495 5.3984 16 14 0.1825 -4.7036 7.7670 17 1 0.9062 -3.4474 8.0885 18 1 -1.1852 -4.6487 8.3429 19 1 0.9165 -5.8586 8.3438 20 7 0.4742 -4.2040 0.6433 21 7 0.4719 -4.2074 -0.6417 22 6 1.0868 -3.1397 -1.0951 23 6 1.2937 -2.7810 -2.5141 24 6 1.1053 -3.7325 -3.5237 25 6 1.3114 -3.3456 -4.8360 26 6 1.6929 -2.0435 -5.1062 27 7 1.8630 -1.1680 -4.1343 28 6 1.6736 -1.4862 -2.8704 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 1.6584 2.1313 0.0004 33 1 4.1193 2.1330 0.0010 34 1 5.3559 0.0047 0.0005 35 1 4.1334 -2.1313 0.0113 36 1 -0.5182 -4.1407 3.2892 37 1 1.0242 -5.0293 3.2899 38 1 -0.9207 -6.6208 5.9817 39 1 0.8067 -4.7424 -3.2844 40 1 1.1751 -4.0525 -5.6410 41 1 1.8540 -1.7388 -6.1297 42 1 1.8184 -0.7403 -2.1029 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005637992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:18 Heat of formation + Delta-G solvation = 139.828797 kcal Electronic energy + Delta-G solvation = -27723.936611 eV Core-core repulsion = 23989.499996 eV Total energy + Delta-G solvation = -3734.436615 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 352.105 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.82108 -40.15367 -39.65652 -34.92798 -33.35678 -33.22598 -32.94601 -32.01526 -30.09888 -29.50368 -28.54443 -27.20108 -24.67341 -24.08899 -23.32774 -23.14582 -22.19745 -21.67171 -20.76008 -18.56498 -17.29461 -16.88567 -16.58213 -16.37411 -16.26515 -15.91956 -15.67640 -14.93262 -14.71604 -14.45634 -14.23916 -14.04890 -13.80952 -13.48102 -13.25774 -13.16007 -12.63006 -12.50375 -12.46167 -12.39326 -12.05983 -11.90658 -11.65668 -11.33774 -10.98831 -10.90310 -10.73323 -10.60543 -10.36765 -10.27106 -9.87195 -9.75341 -9.70113 -9.28588 -9.18674 -8.93859 -8.91763 -8.61432 -6.94047 -6.23694 -4.32300 0.47097 0.78315 0.99981 1.03775 1.67054 1.98223 2.64062 3.01293 3.21760 3.28702 3.30421 3.31362 3.42778 3.65899 3.95982 4.29661 4.31061 4.48940 4.52329 4.58338 4.64020 4.73895 4.76258 4.97414 5.12268 5.12753 5.13436 5.18694 5.38530 5.41932 5.46869 5.52079 5.61159 5.67612 5.83421 5.94048 6.01208 6.03157 6.08611 6.14069 6.16931 6.35987 6.47373 7.01652 7.05606 7.16750 7.63810 7.67252 7.88132 8.68511 8.81838 9.31563 10.86638 Molecular weight = 352.11amu Principal moments of inertia in cm(-1) A = 0.013465 B = 0.003205 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.002832 B = 8734.699333 C =10201.644711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.061 4.061 3 C -0.112 4.112 4 C -0.095 4.095 5 C -0.114 4.114 6 C -0.089 4.089 7 C 0.106 3.894 8 N -0.424 5.424 9 C 0.199 3.801 10 S -0.037 6.037 11 C 0.074 3.926 12 C -0.527 4.527 13 H 0.068 0.932 14 C 0.072 3.928 15 N -0.880 5.880 16 Si 0.907 3.093 17 H -0.270 1.270 18 H -0.280 1.280 19 H -0.280 1.280 20 N -0.284 5.284 21 N -0.259 5.259 22 C 0.200 3.800 23 C -0.053 4.053 24 C -0.038 4.038 25 C -0.169 4.169 26 C 0.099 3.901 27 N -0.478 5.478 28 C 0.108 3.892 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.267 0.733 39 H 0.148 0.852 40 H 0.142 0.858 41 H 0.159 0.841 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.260 13.414 -18.369 23.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.062 4.062 3 C -0.130 4.130 4 C -0.113 4.113 5 C -0.133 4.133 6 C -0.108 4.108 7 C 0.015 3.985 8 N -0.116 5.116 9 C -0.171 4.171 10 S 0.193 5.807 11 C -0.073 4.073 12 C -0.567 4.567 13 H 0.086 0.914 14 C -0.134 4.134 15 N -0.517 5.517 16 Si 0.734 3.266 17 H -0.194 1.194 18 H -0.206 1.206 19 H -0.206 1.206 20 N -0.128 5.128 21 N -0.099 5.099 22 C -0.065 4.065 23 C -0.058 4.058 24 C -0.066 4.066 25 C -0.189 4.189 26 C -0.059 4.059 27 N -0.186 5.186 28 C -0.051 4.051 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.166 0.834 40 H 0.160 0.840 41 H 0.176 0.824 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 7.169 13.665 -17.980 23.694 hybrid contribution -0.177 -0.944 0.683 1.179 sum 6.992 12.721 -17.297 22.581 Atomic orbital electron populations 1.20882 0.90186 1.03079 1.03869 1.20055 0.96952 0.91646 0.97574 1.20995 0.94282 0.97007 1.00722 1.21321 0.94160 0.98454 0.97411 1.21053 1.00408 0.91442 1.00357 1.21251 0.92054 0.99657 0.97858 1.17352 0.90729 0.82917 1.07490 1.43699 1.44625 1.18033 1.05258 1.27775 0.99970 0.92576 0.96819 1.85705 1.72950 1.38014 0.83989 1.21394 0.98502 0.90223 0.97173 1.20597 1.39184 1.08726 0.88161 0.91412 1.24939 0.94421 0.94580 0.99468 1.69991 1.35591 1.10340 1.35737 0.86291 0.78066 0.78407 0.83848 1.19402 1.20583 1.20593 1.74913 1.19496 1.16627 1.01783 1.74264 1.15934 1.15854 1.03880 1.22610 1.03402 0.92222 0.88291 1.18504 1.03591 0.95685 0.88005 1.21700 0.93551 0.99903 0.91440 1.22118 1.01672 0.98084 0.97033 1.22927 0.94409 0.89705 0.98814 1.67723 1.14256 1.36462 1.00128 1.23252 0.94083 0.93922 0.93863 0.89544 0.90551 0.91803 0.84709 0.85015 0.84833 0.85202 0.92800 0.92821 0.92283 0.83389 0.84013 0.82391 0.82345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 9.77 36.00 0.35 -1.15 16 2 C -0.06 -0.74 4.30 -104.45 -0.45 -1.19 16 3 C -0.11 -1.06 9.70 -39.61 -0.38 -1.45 16 4 C -0.10 -0.81 10.04 -39.55 -0.40 -1.21 16 5 C -0.11 -1.09 10.04 -39.61 -0.40 -1.49 16 6 C -0.09 -1.11 9.97 -39.41 -0.39 -1.50 16 7 C 0.11 1.49 3.40 -83.60 -0.28 1.21 16 8 N -0.42 -7.26 1.93 -58.15 -0.11 -7.38 16 9 C 0.20 4.11 8.04 -87.94 -0.71 3.40 16 10 S -0.04 -0.79 21.92 -107.50 -2.36 -3.15 16 11 C 0.07 1.94 4.99 36.00 0.18 2.12 16 12 C -0.53 -14.39 9.13 -34.44 -0.31 -14.70 16 13 H 0.07 1.80 7.71 -52.49 -0.40 1.40 16 14 C 0.07 1.97 5.46 -17.82 -0.10 1.88 16 15 N -0.88 -25.55 13.29 55.43 0.74 -24.81 16 16 Si 0.91 20.84 29.54 -169.99 -5.02 15.82 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 N -0.28 -6.44 11.58 30.76 0.36 -6.08 16 21 N -0.26 -5.25 12.03 32.63 0.39 -4.85 16 22 C 0.20 3.45 7.24 -153.56 -1.11 2.34 16 23 C -0.05 -0.75 5.89 -104.82 -0.62 -1.36 16 24 C -0.04 -0.45 9.84 -38.87 -0.38 -0.83 16 25 C -0.17 -1.51 10.10 -39.50 -0.40 -1.91 16 26 C 0.10 0.93 11.17 -17.48 -0.20 0.73 16 27 N -0.48 -5.76 10.35 -12.90 -0.13 -5.90 16 28 C 0.11 1.41 10.47 -17.12 -0.18 1.23 16 29 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 31 H 0.06 0.91 7.04 -51.93 -0.37 0.54 16 32 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 33 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 34 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.13 1.63 8.06 -52.48 -0.42 1.20 16 36 H 0.05 1.51 8.14 -51.92 -0.42 1.09 16 37 H 0.05 1.51 8.14 -51.92 -0.42 1.08 16 38 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.15 1.69 8.01 -52.49 -0.42 1.27 16 40 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.16 0.95 8.06 -52.48 -0.42 0.52 16 42 H 0.16 2.05 4.17 -52.49 -0.22 1.83 16 LS Contribution 377.58 15.07 5.69 5.69 Total: -1.00 -32.51 377.58 -10.99 -43.51 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -4.77 Total: 1.03 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -5.78 Total: -13.89 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 1.24 Total: -49.02 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: -0.79 SS G_CDS: -2.36 Total: -3.15 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.51 -10.99 -43.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005637992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.335 kcal (2) G-P(sol) polarization free energy of solvation -32.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds