Wall clock time and date at job start Tue Mar 31 2020 06:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35823 * 116.99939 * 2 1 4 4 C 1.38875 * 119.90148 * 359.97438 * 3 2 1 5 5 C 1.37748 * 120.17292 * 179.69995 * 4 3 2 6 6 C 1.39966 * 119.97339 * 0.62400 * 5 4 3 7 7 C 1.46979 * 120.09385 * 179.67741 * 6 5 4 8 8 C 1.35042 * 120.00133 * 359.71954 * 7 6 5 9 9 C 1.46177 * 119.99999 * 179.97438 * 8 7 6 10 10 O 1.21736 * 119.99834 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00003 * 180.02562 * 9 8 7 12 12 C 1.39062 * 120.00129 * 174.87207 * 11 9 8 13 13 C 1.39531 * 119.83331 * 326.00226 * 12 11 9 14 14 C 1.36354 * 120.16332 * 179.70244 * 13 12 11 15 15 C 1.40888 * 119.83136 * 0.28053 * 14 13 12 16 16 C 1.41126 * 120.16134 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99974 * 207.80807 * 16 15 14 18 18 C 1.39907 * 119.99865 * 27.80349 * 16 15 14 19 19 N 1.30876 * 119.99927 * 11.37062 * 18 16 15 20 20 Si 1.86801 * 120.00018 * 191.37262 * 18 16 15 21 21 H 1.48494 * 109.46975 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47367 * 119.99941 * 20 18 16 23 23 H 1.48496 * 109.46847 * 240.00051 * 20 18 16 24 24 C 1.40893 * 119.68075 * 359.97438 * 15 14 13 25 25 C 1.36345 * 119.83145 * 0.02562 * 24 15 14 26 26 C 1.39975 * 119.80946 * 359.39669 * 6 5 4 27 27 C 1.38091 * 119.82399 * 0.28257 * 26 6 5 28 28 O 1.35991 * 119.98801 * 180.02562 * 27 26 6 29 29 C 1.42905 * 117.00273 * 359.97438 * 28 27 26 30 30 H 1.09006 * 109.47108 * 60.00449 * 1 2 3 31 31 H 1.09007 * 109.46893 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47541 * 300.00099 * 1 2 3 33 33 H 1.08000 * 119.91134 * 0.02562 * 4 3 2 34 34 H 1.08002 * 120.01140 * 180.32078 * 5 4 3 35 35 H 1.07996 * 119.99905 * 179.72496 * 7 6 5 36 36 H 1.07996 * 119.99962 * 0.02562 * 8 7 6 37 37 H 0.97002 * 120.00284 * 354.86829 * 11 9 8 38 38 H 1.08002 * 119.92078 * 359.97438 * 13 12 11 39 39 H 1.07994 * 120.08656 * 180.29879 * 14 13 12 40 40 H 0.97004 * 119.99939 * 179.97438 * 19 18 16 41 41 H 1.07998 * 120.08285 * 180.02562 * 24 15 14 42 42 H 1.08000 * 119.91803 * 179.97438 * 25 24 15 43 43 H 1.08000 * 120.08634 * 180.29855 * 26 6 5 44 44 H 1.08998 * 109.46551 * 60.00265 * 29 28 27 45 45 H 1.08995 * 109.47358 * 180.02562 * 29 28 27 46 46 H 1.09002 * 109.46731 * 300.00693 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0456 1.2102 0.0000 4 6 1.2872 2.3736 -0.0005 5 6 1.9067 3.6039 0.0057 6 6 3.3041 3.6832 -0.0006 7 6 3.9678 4.9946 -0.0011 8 6 3.2293 6.1252 -0.0013 9 6 3.8895 7.4294 -0.0012 10 8 5.1050 7.4963 -0.0016 11 7 3.1525 8.5577 -0.0008 12 6 3.7765 9.7958 0.1068 13 6 4.9311 9.9263 0.8792 14 6 5.5519 11.1358 0.9846 15 6 5.0211 12.2566 0.3159 16 6 5.6582 13.5115 0.4196 17 1 5.0820 14.4195 0.3202 18 6 7.0363 13.5794 0.6515 19 7 7.7705 12.5007 0.5515 20 14 7.8281 15.2097 1.1038 21 1 6.7884 16.2688 1.1508 22 1 8.4767 15.0927 2.4344 23 1 8.8488 15.5637 0.0850 24 6 3.8518 12.1182 -0.4579 25 6 3.2420 10.9025 -0.5539 26 6 4.0676 2.5100 -0.0005 27 6 3.4382 1.2809 0.0000 28 8 4.1767 0.1390 0.0007 29 6 5.5982 0.2857 0.0003 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 0.2088 2.3135 -0.0005 34 1 1.3143 4.5070 0.0105 35 1 5.0462 5.0540 -0.0015 36 1 2.1510 6.0658 -0.0006 37 1 2.1867 8.5063 -0.0757 38 1 5.3368 9.0663 1.3914 39 1 6.4482 11.2344 1.5788 40 1 8.7261 12.5478 0.7119 41 1 3.4396 12.9729 -0.9735 42 1 2.3454 10.7949 -1.1463 43 1 5.1462 2.5660 -0.0004 44 1 5.9069 0.8347 0.8899 45 1 6.0651 -0.6992 0.0005 46 1 5.9066 0.8336 -0.8901 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008125631.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:26 Heat of formation + Delta-G solvation = -40.106480 kcal Electronic energy + Delta-G solvation = -28596.145220 eV Core-core repulsion = 24416.974836 eV Total energy + Delta-G solvation = -4179.170384 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.146 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.88298 -39.60698 -38.80305 -37.69833 -37.11923 -34.47882 -33.43572 -32.89233 -30.81537 -30.02569 -29.47220 -28.91084 -27.60326 -27.31468 -25.30795 -23.82573 -22.52342 -21.76815 -21.22796 -20.23503 -19.21515 -18.79101 -17.47402 -17.32898 -17.24118 -16.51993 -16.41916 -16.25471 -15.58584 -15.21504 -15.11680 -14.87587 -14.70154 -14.44914 -14.06634 -13.90925 -13.34093 -13.16870 -12.99598 -12.70394 -12.68531 -12.47846 -12.11083 -12.04756 -11.82156 -11.71599 -11.58749 -11.53040 -11.48885 -11.28084 -11.14336 -10.91647 -10.51656 -9.94299 -9.88048 -9.84368 -9.48240 -9.15610 -8.90959 -8.69522 -7.88842 -7.51948 -6.93961 -6.68161 -4.29463 0.38871 1.01051 1.88729 2.71555 2.88547 2.93225 3.07332 3.09308 3.14313 3.14475 3.44143 3.77250 3.84279 3.95800 4.36560 4.51845 4.57717 4.69143 4.72034 4.77680 4.80613 4.88289 4.95100 4.97257 5.08080 5.11785 5.21471 5.27142 5.34272 5.70870 5.76259 5.81621 5.91921 6.14431 6.24282 6.29820 6.40184 6.46260 6.68667 6.81638 7.01485 7.05284 7.18462 7.21229 7.30018 7.61381 7.69986 7.98232 8.07016 8.22384 8.33827 8.64842 8.80399 8.90446 9.02007 10.24210 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.022938 B = 0.001599 C = 0.001506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.403294 B =17510.163544 C =18589.760725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.306 6.306 3 C 0.104 3.896 4 C -0.174 4.174 5 C -0.099 4.099 6 C -0.062 4.062 7 C -0.036 4.036 8 C -0.193 4.193 9 C 0.526 3.474 10 O -0.533 6.533 11 N -0.645 5.645 12 C -0.003 4.003 13 C -0.087 4.087 14 C -0.150 4.150 15 C 0.104 3.896 16 C -0.458 4.458 17 H 0.078 0.922 18 C 0.071 3.929 19 N -0.795 5.795 20 Si 0.911 3.089 21 H -0.261 1.261 22 H -0.273 1.273 23 H -0.275 1.275 24 C -0.212 4.212 25 C -0.107 4.107 26 C -0.152 4.152 27 C 0.098 3.902 28 O -0.308 6.308 29 C 0.024 3.976 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.126 0.874 37 H 0.395 0.605 38 H 0.102 0.898 39 H 0.123 0.877 40 H 0.280 0.720 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.141 0.859 44 H 0.057 0.943 45 H 0.101 0.899 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.595 -22.861 -0.301 25.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.059 3.941 4 C -0.193 4.193 5 C -0.117 4.117 6 C -0.062 4.062 7 C -0.056 4.056 8 C -0.213 4.213 9 C 0.315 3.685 10 O -0.411 6.411 11 N -0.287 5.287 12 C -0.095 4.095 13 C -0.107 4.107 14 C -0.170 4.170 15 C 0.101 3.899 16 C -0.488 4.488 17 H 0.096 0.904 18 C -0.146 4.146 19 N -0.421 5.421 20 Si 0.736 3.264 21 H -0.185 1.185 22 H -0.198 1.198 23 H -0.200 1.200 24 C -0.232 4.232 25 C -0.127 4.127 26 C -0.171 4.171 27 C 0.052 3.948 28 O -0.222 6.222 29 C -0.071 4.071 30 H 0.074 0.926 31 H 0.118 0.882 32 H 0.074 0.926 33 H 0.156 0.844 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.144 0.856 37 H 0.228 0.772 38 H 0.120 0.880 39 H 0.141 0.859 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.108 0.892 43 H 0.159 0.841 44 H 0.075 0.925 45 H 0.119 0.881 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.468 -23.288 -0.272 25.534 hybrid contribution -0.117 0.970 0.015 0.977 sum -10.584 -22.318 -0.258 24.702 Atomic orbital electron populations 1.23099 0.78429 1.04078 1.01383 1.86132 1.21137 1.25988 1.88671 1.18437 0.89121 0.85249 1.01322 1.20996 1.00052 0.91264 1.06987 1.21152 0.93620 0.97408 0.99497 1.18740 0.92828 0.92453 1.02222 1.22225 1.00457 0.89813 0.93091 1.23023 1.00202 0.92586 1.05530 1.18235 0.87445 0.84460 0.78387 1.90844 1.13518 1.87357 1.49418 1.42868 1.09324 1.05061 1.71401 1.17191 1.00299 0.83629 1.08387 1.20456 0.94898 0.97449 0.97926 1.21067 1.01495 0.91962 1.02505 1.17703 0.90386 0.93471 0.88355 1.19574 0.92664 0.93582 1.42983 0.90414 1.25938 0.97752 0.98187 0.92746 1.69843 1.07292 1.29498 1.35477 0.86216 0.79386 0.82014 0.78810 1.18474 1.19782 1.20015 1.20586 1.01221 0.95779 1.05582 1.20061 0.99711 0.93214 0.99744 1.21284 1.00546 0.90271 1.04981 1.18089 0.88257 0.86037 1.02399 1.86164 1.18921 1.27972 1.89108 1.23114 0.78381 1.04025 1.01591 0.92568 0.88157 0.92555 0.84428 0.84811 0.84595 0.85628 0.77189 0.88032 0.85884 0.90915 0.88595 0.89165 0.84088 0.92455 0.88095 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.09 10.26 -33.86 -0.35 -3.44 16 3 C 0.10 1.10 6.71 -38.90 -0.26 0.84 16 4 C -0.17 -1.52 9.01 -39.52 -0.36 -1.87 16 5 C -0.10 -0.92 9.40 -39.11 -0.37 -1.29 16 6 C -0.06 -0.67 5.87 -105.06 -0.62 -1.29 16 7 C -0.04 -0.45 9.45 -37.18 -0.35 -0.80 16 8 C -0.19 -2.49 9.41 -37.53 -0.35 -2.84 16 9 C 0.53 9.49 7.45 -13.08 -0.10 9.40 16 10 O -0.53 -12.05 13.92 5.16 0.07 -11.98 16 11 N -0.64 -11.49 5.30 -11.07 -0.06 -11.55 16 12 C 0.00 -0.06 6.28 -83.62 -0.52 -0.58 16 13 C -0.09 -2.20 8.57 -39.78 -0.34 -2.54 16 14 C -0.15 -4.07 8.61 -39.26 -0.34 -4.40 16 15 C 0.10 2.79 5.56 -106.79 -0.59 2.20 16 16 C -0.46 -12.23 9.05 -37.86 -0.34 -12.57 16 17 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16 18 C 0.07 1.81 5.24 -17.33 -0.09 1.72 16 19 N -0.80 -21.20 10.80 55.55 0.60 -20.60 16 20 Si 0.91 18.89 29.58 -169.99 -5.03 13.87 16 21 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 24 C -0.21 -5.15 9.74 -39.26 -0.38 -5.54 16 25 C -0.11 -2.37 9.89 -39.78 -0.39 -2.76 16 26 C -0.15 -1.57 8.78 -38.98 -0.34 -1.91 16 27 C 0.10 1.08 6.69 -39.19 -0.26 0.81 16 28 O -0.31 -3.33 10.27 -34.39 -0.35 -3.68 16 29 C 0.02 0.16 9.81 101.05 0.99 1.16 16 30 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 31 H 0.10 0.37 8.14 -51.92 -0.42 -0.05 16 32 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 33 H 0.14 0.82 6.27 -52.49 -0.33 0.49 16 34 H 0.13 0.98 6.15 -52.49 -0.32 0.66 16 35 H 0.14 1.80 7.52 -52.49 -0.39 1.41 16 36 H 0.13 1.18 6.06 -52.49 -0.32 0.86 16 37 H 0.39 5.33 8.79 -40.82 -0.36 4.97 16 38 H 0.10 2.56 6.43 -52.49 -0.34 2.23 16 39 H 0.12 3.45 6.15 -52.49 -0.32 3.13 16 40 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 41 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 42 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 43 H 0.14 1.21 6.28 -52.49 -0.33 0.88 16 44 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 45 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 LS Contribution 389.62 15.07 5.87 5.87 Total: -1.00 -33.85 389.62 -8.82 -42.67 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -5.54 Total: 9.99 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -4.03 Total: -21.14 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.54 Total: -32.15 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.63 Total: -19.10 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.85 -8.82 -42.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008125631.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.561 kcal (2) G-P(sol) polarization free energy of solvation -33.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds