Wall clock time and date at job start Tue Mar 31 2020 05:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.37865 * 119.99799 * 143.78844 * 3 2 1 5 5 C 1.46376 * 120.00235 * 7.94175 * 4 3 2 6 6 C 1.40298 * 120.12651 * 206.79299 * 5 4 3 7 7 C 1.36533 * 119.87789 * 179.76521 * 6 5 4 8 8 C 1.39281 * 120.11828 * 0.51275 * 7 6 5 9 9 O 1.35507 * 119.86979 * 179.71667 * 8 7 6 10 10 C 1.34751 * 116.99603 * 185.81064 * 9 8 7 11 11 H 1.08003 * 119.99983 * 5.43629 * 10 9 8 12 12 C 1.38768 * 120.00128 * 185.44527 * 10 9 8 13 13 N 1.31476 * 120.00078 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00216 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47438 * 59.99759 * 14 12 10 16 16 H 1.48506 * 109.47115 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47215 * 299.99376 * 14 12 10 18 18 C 1.39270 * 120.25114 * 359.74301 * 8 7 6 19 19 C 1.36541 * 120.12432 * 359.97438 * 18 8 7 20 20 C 1.47088 * 120.00435 * 323.78437 * 3 2 1 21 21 O 1.21668 * 120.00163 * 179.97438 * 20 3 2 22 22 N 1.34778 * 120.00024 * 0.02562 * 20 3 2 23 23 C 1.39959 * 120.00337 * 185.43533 * 22 20 3 24 24 C 1.38834 * 120.08060 * 24.42413 * 23 22 20 25 25 C 1.38134 * 119.95160 * 180.02562 * 24 23 22 26 26 C 1.38278 * 120.11652 * 0.02562 * 25 24 23 27 27 C 1.38277 * 120.16287 * 359.97438 * 26 25 24 28 28 C 1.38301 * 120.04256 * 0.02562 * 27 26 25 29 29 F 1.35097 * 120.05538 * 180.02562 * 28 27 26 30 30 H 1.08004 * 120.00034 * 187.94532 * 4 3 2 31 31 H 1.08007 * 120.06146 * 0.02562 * 6 5 4 32 32 H 1.07994 * 119.94324 * 180.25600 * 7 6 5 33 33 H 0.97001 * 120.00022 * 180.02562 * 13 12 10 34 34 H 1.07996 * 119.93839 * 179.97438 * 18 8 7 35 35 H 1.07992 * 120.06391 * 180.02562 * 19 18 8 36 36 H 0.97001 * 119.99831 * 5.42818 * 22 20 3 37 37 H 1.08001 * 120.02144 * 0.29787 * 24 23 22 38 38 H 1.07998 * 119.94276 * 179.97438 * 25 24 23 39 39 H 1.08007 * 119.92128 * 179.97438 * 26 25 24 40 40 H 1.07999 * 119.97714 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2568 0.9643 -0.7054 5 6 2.5350 2.0853 -1.3093 6 6 3.0558 2.7303 -2.4412 7 6 2.3759 3.7724 -3.0033 8 6 1.1727 4.2021 -2.4488 9 8 0.5049 5.2406 -3.0074 10 6 -0.5878 5.6861 -2.3568 11 1 -0.8451 5.2775 -1.3907 12 6 -1.3827 6.6696 -2.9282 13 7 -1.0693 7.1672 -4.1041 14 14 -2.8978 7.2867 -2.0267 15 1 -2.4949 7.8655 -0.7198 16 1 -3.5693 8.3295 -2.8434 17 1 -3.8336 6.1562 -1.7999 18 6 0.6536 3.5691 -1.3221 19 6 1.3223 2.5223 -0.7552 20 6 3.3040 -1.0267 0.7526 21 8 4.5206 -1.0264 0.7522 22 7 2.6306 -1.9691 1.4418 23 6 3.3260 -2.8766 2.2490 24 6 4.5757 -2.5433 2.7537 25 6 5.2599 -3.4412 3.5496 26 6 4.7028 -4.6720 3.8442 27 6 3.4585 -5.0090 3.3440 28 6 2.7675 -4.1150 2.5465 29 9 1.5516 -4.4438 2.0580 30 1 4.3291 0.8920 -0.8124 31 1 3.9908 2.4004 -2.8696 32 1 2.7737 4.2669 -3.8770 33 1 -1.6247 7.8550 -4.5034 34 1 -0.2795 3.9068 -0.8960 35 1 0.9187 2.0318 0.1182 36 1 1.6639 -2.0182 1.3785 37 1 5.0105 -1.5808 2.5278 38 1 6.2322 -3.1819 3.9419 39 1 5.2408 -5.3719 4.4665 40 1 3.0259 -5.9710 3.5763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008220533.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:52 Heat of formation + Delta-G solvation = 3.223578 kcal Electronic energy + Delta-G solvation = -28081.003733 eV Core-core repulsion = 23742.137544 eV Total energy + Delta-G solvation = -4338.866189 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 352.101 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.15297 -40.76086 -39.54475 -38.65725 -37.50800 -36.25866 -35.07124 -33.41425 -32.59747 -30.89291 -30.66551 -30.17067 -28.56901 -25.92514 -24.51451 -23.43504 -22.80433 -22.15959 -21.20953 -20.85304 -19.00309 -18.42881 -18.04976 -17.39917 -17.24499 -16.38163 -15.97797 -15.64294 -15.35790 -15.23062 -14.92538 -14.78346 -14.59347 -14.45939 -14.09027 -14.00493 -13.82792 -13.44327 -13.29524 -13.20010 -12.80078 -12.73196 -12.57658 -12.22336 -12.14898 -11.97498 -11.83770 -11.76217 -11.27282 -11.17856 -10.94947 -10.87964 -10.69237 -10.07727 -9.75366 -9.60099 -9.11694 -9.06024 -8.62496 -8.37603 -7.36117 -6.88671 -4.38298 0.35118 0.85658 0.95737 2.03855 2.18231 2.57733 2.64912 2.87233 2.93519 2.95860 2.97862 3.35927 3.66359 3.68272 3.91080 4.07103 4.27195 4.42055 4.55803 4.71262 4.75049 4.82996 4.94036 5.06544 5.12590 5.26287 5.30753 5.41624 5.63529 5.72404 5.81650 5.82941 5.87901 5.95630 6.07944 6.18124 6.21427 6.30416 6.57106 6.66268 6.71134 6.89197 7.01823 7.04522 7.06573 7.43903 7.57236 7.61786 7.87522 8.54792 9.18909 10.26151 Molecular weight = 352.10amu Principal moments of inertia in cm(-1) A = 0.021276 B = 0.001900 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.750913 B =14730.718065 C =15566.968591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.260 3.740 3 C -0.218 4.218 4 C 0.135 3.865 5 C -0.238 4.238 6 C -0.021 4.021 7 C -0.200 4.200 8 C 0.172 3.828 9 O -0.145 6.145 10 C -0.388 4.388 11 H 0.101 0.899 12 C 0.044 3.956 13 N -0.838 5.838 14 Si 0.948 3.052 15 H -0.265 1.265 16 H -0.273 1.273 17 H -0.265 1.265 18 C -0.241 4.241 19 C -0.024 4.024 20 C 0.589 3.411 21 O -0.523 6.523 22 N -0.670 5.670 23 C 0.129 3.871 24 C -0.107 4.107 25 C -0.107 4.107 26 C -0.116 4.116 27 C -0.133 4.133 28 C 0.060 3.940 29 F -0.139 7.139 30 H 0.152 0.848 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.280 0.720 34 H 0.132 0.868 35 H 0.115 0.885 36 H 0.414 0.586 37 H 0.159 0.841 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.653 -16.844 12.191 23.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.052 4.052 3 C -0.226 4.226 4 C 0.112 3.888 5 C -0.239 4.239 6 C -0.040 4.040 7 C -0.219 4.219 8 C 0.113 3.887 9 O -0.043 6.043 10 C -0.463 4.463 11 H 0.119 0.881 12 C -0.165 4.165 13 N -0.468 5.468 14 Si 0.771 3.229 15 H -0.189 1.189 16 H -0.198 1.198 17 H -0.190 1.190 18 C -0.260 4.260 19 C -0.043 4.043 20 C 0.381 3.619 21 O -0.401 6.401 22 N -0.313 5.313 23 C 0.033 3.967 24 C -0.127 4.127 25 C -0.126 4.126 26 C -0.135 4.135 27 C -0.152 4.152 28 C 0.038 3.962 29 F -0.118 7.118 30 H 0.169 0.831 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.090 0.910 34 H 0.149 0.851 35 H 0.133 0.867 36 H 0.250 0.750 37 H 0.176 0.824 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.581 -16.421 11.719 22.333 hybrid contribution -1.247 0.146 0.278 1.286 sum 8.334 -16.274 11.997 21.868 Atomic orbital electron populations 1.81321 1.11722 1.08768 1.09050 1.25382 0.92557 0.93285 0.94021 1.17478 0.84786 1.04225 1.16113 1.23058 0.99406 0.85697 0.80662 1.18400 0.99699 1.02572 1.03231 1.20638 0.97561 0.92589 0.93175 1.19935 0.95807 1.01808 1.04351 1.19745 0.91453 0.86367 0.91148 1.83875 1.36379 1.38225 1.45814 1.21607 1.01787 1.20197 1.02665 0.88138 1.25513 0.99156 0.95711 0.96120 1.69981 1.37625 1.24555 1.14638 0.85653 0.79185 0.79024 0.79065 1.18936 1.19786 1.18952 1.20834 1.03467 1.01197 1.00521 1.21065 0.91782 0.94086 0.97371 1.17666 0.86804 0.79795 0.77642 1.90758 1.12629 1.73874 1.62865 1.43343 1.11219 1.31344 1.45410 1.17837 0.94770 0.88577 0.95561 1.21453 0.93073 1.02084 0.96097 1.21168 1.00238 0.93579 0.97568 1.21004 0.94765 0.97312 1.00428 1.20970 0.95954 0.99550 0.98720 1.17462 0.83356 0.93285 1.02058 1.91490 1.41171 1.92599 1.86499 0.83099 0.85745 0.85665 0.91030 0.85062 0.86711 0.74992 0.82357 0.84914 0.85029 0.84499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.32 17.82 41.84 0.75 -6.57 16 2 C 0.26 3.91 10.45 -22.48 -0.23 3.67 16 3 C -0.22 -2.87 5.84 -104.52 -0.61 -3.48 16 4 C 0.14 1.71 9.46 -36.45 -0.34 1.36 16 5 C -0.24 -3.69 5.62 -105.07 -0.59 -4.28 16 6 C -0.02 -0.32 9.75 -39.42 -0.38 -0.70 16 7 C -0.20 -3.68 9.93 -39.81 -0.40 -4.07 16 8 C 0.17 3.76 6.66 -38.81 -0.26 3.51 16 9 O -0.14 -3.74 9.74 1.02 0.01 -3.73 16 10 C -0.39 -9.89 9.44 30.93 0.29 -9.60 16 11 H 0.10 2.37 5.27 -52.48 -0.28 2.10 16 12 C 0.04 1.09 5.50 -17.51 -0.10 1.00 16 13 N -0.84 -22.36 13.67 55.49 0.76 -21.60 16 14 Si 0.95 18.82 29.55 -169.99 -5.02 13.79 16 15 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 16 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 17 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 18 C -0.24 -4.92 9.07 -39.81 -0.36 -5.28 16 19 C -0.02 -0.43 8.29 -39.42 -0.33 -0.76 16 20 C 0.59 7.55 7.56 -12.67 -0.10 7.45 16 21 O -0.52 -7.25 13.45 5.22 0.07 -7.18 16 22 N -0.67 -8.01 5.26 -10.87 -0.06 -8.07 16 23 C 0.13 1.48 6.44 -83.62 -0.54 0.94 16 24 C -0.11 -1.12 8.71 -39.40 -0.34 -1.46 16 25 C -0.11 -0.85 10.04 -39.60 -0.40 -1.25 16 26 C -0.12 -0.83 10.04 -39.55 -0.40 -1.22 16 27 C -0.13 -1.11 10.02 -39.54 -0.40 -1.50 16 28 C 0.06 0.65 7.31 -39.25 -0.29 0.36 16 29 F -0.14 -1.62 16.81 2.25 0.04 -1.58 16 30 H 0.15 1.53 7.62 -52.48 -0.40 1.13 16 31 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 32 H 0.13 2.17 8.06 -52.49 -0.42 1.74 16 33 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 34 H 0.13 2.73 5.69 -52.49 -0.30 2.43 16 35 H 0.12 1.97 5.10 -52.49 -0.27 1.70 16 36 H 0.41 4.75 7.34 -40.82 -0.30 4.45 16 37 H 0.16 1.78 5.77 -52.49 -0.30 1.47 16 38 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.13 0.58 8.06 -52.48 -0.42 0.15 16 40 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 363.13 15.07 5.47 5.47 Total: -1.00 -28.90 363.13 -6.85 -35.74 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -3.09 Total: 9.05 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -5.77 Total: -15.32 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 1.45 Total: -36.25 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.91 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.02 Total: 13.79 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.90 -6.85 -35.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008220533.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.967 kcal (2) G-P(sol) polarization free energy of solvation -28.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds