Wall clock time and date at job start Tue Mar 31 2020 06:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35926 * 116.99863 * 2 1 4 4 C 1.38479 * 120.11162 * 359.97438 * 3 2 1 5 5 C 1.38275 * 120.06863 * 180.02562 * 4 3 2 6 6 C 1.38347 * 120.29397 * 359.97438 * 5 4 3 7 7 C 1.38056 * 120.22723 * 359.97438 * 6 5 4 8 8 C 1.39284 * 119.92595 * 0.03238 * 7 6 5 9 9 C 1.48331 * 120.14461 * 179.97438 * 8 7 6 10 10 C 1.40644 * 126.35247 * 254.99420 * 9 8 7 11 11 C 1.50706 * 125.70752 * 0.02861 * 10 9 8 12 12 N 1.30733 * 108.57862 * 179.97438 * 10 9 8 13 13 N 1.39993 * 109.02228 * 0.02562 * 12 10 9 14 14 C 1.36455 * 107.96053 * 359.72771 * 13 12 10 15 15 N 1.37871 * 120.37100 * 179.64669 * 14 13 12 16 16 H 0.97007 * 119.92936 * 180.27206 * 15 14 13 17 17 C 1.36243 * 120.14361 * 0.58618 * 15 14 13 18 18 C 1.50699 * 120.04207 * 179.68896 * 17 15 14 19 19 C 1.35288 * 119.91744 * 359.70949 * 17 15 14 20 20 C 1.50698 * 120.08036 * 180.02562 * 19 17 15 21 21 C 1.50698 * 109.47585 * 94.97865 * 20 19 17 22 22 H 1.08002 * 119.99653 * 359.97438 * 21 20 19 23 23 C 1.37876 * 120.00333 * 179.97438 * 21 20 19 24 24 N 1.31513 * 119.99886 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00014 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47029 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46918 * 120.00037 * 25 23 21 28 28 H 1.48498 * 109.46851 * 240.00194 * 25 23 21 29 29 C 1.34804 * 132.13189 * 179.97438 * 13 12 10 30 30 O 1.21824 * 120.08937 * 359.96632 * 29 13 12 31 31 H 1.08998 * 109.46954 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47217 * 300.00433 * 1 2 3 33 33 H 1.09003 * 109.46721 * 60.00522 * 1 2 3 34 34 H 1.08000 * 119.96889 * 359.97438 * 4 3 2 35 35 H 1.08001 * 119.85391 * 179.70227 * 5 4 3 36 36 H 1.07995 * 119.88463 * 179.97438 * 6 5 4 37 37 H 1.07996 * 120.03755 * 179.97438 * 7 6 5 38 38 H 1.08998 * 109.46968 * 89.99669 * 11 10 9 39 39 H 1.09001 * 109.46817 * 209.99385 * 11 10 9 40 40 H 1.08998 * 109.47038 * 329.99393 * 11 10 9 41 41 H 1.09000 * 109.47166 * 270.01534 * 18 17 15 42 42 H 1.08999 * 109.47331 * 30.01980 * 18 17 15 43 43 H 1.09004 * 109.47336 * 150.02117 * 18 17 15 44 44 H 1.09007 * 109.46615 * 214.97594 * 20 19 17 45 45 H 1.08995 * 109.47793 * 334.97268 * 20 19 17 46 46 H 0.96998 * 119.99855 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2941 2.3740 -0.0005 5 6 1.9228 3.6055 -0.0011 6 6 3.3040 3.6840 -0.0005 7 6 4.0656 2.5325 0.0011 8 6 3.4420 1.2871 0.0015 9 6 4.2556 0.0467 0.0026 10 6 4.4681 -0.8119 -1.0909 11 6 3.9043 -0.6278 -2.4763 12 7 5.2376 -1.7956 -0.7046 13 7 5.5564 -1.6217 0.6474 14 6 4.9511 -0.4774 1.0787 15 7 5.0918 -0.0646 2.3866 16 1 4.6554 0.7479 2.6874 17 6 5.8476 -0.7920 3.2560 18 6 6.0056 -0.3350 4.6833 19 6 6.4565 -1.9248 2.8363 20 6 7.2929 -2.7325 3.7950 21 6 6.4530 -3.8329 4.3906 22 1 5.4169 -3.9366 4.1039 23 6 7.0071 -4.7071 5.3014 24 7 8.2686 -4.5803 5.6509 25 14 5.9656 -6.0706 6.0402 26 1 4.5895 -5.9972 5.4872 27 1 6.5640 -7.3876 5.7046 28 1 5.9158 -5.9111 7.5158 29 6 6.3059 -2.3482 1.5005 30 8 6.8514 -3.3681 1.1179 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 0.2155 2.3189 -0.0014 35 1 1.3329 4.5102 -0.0064 36 1 3.7881 4.6494 -0.0014 37 1 5.1436 2.5974 0.0011 38 1 4.5988 -0.0394 -3.0760 39 1 3.7583 -1.6026 -2.9416 40 1 2.9482 -0.1083 -2.4134 41 1 6.8735 0.3198 4.7613 42 1 5.1121 0.2076 4.9921 43 1 6.1454 -1.2020 5.3291 44 1 8.1378 -3.1685 3.2616 45 1 7.6608 -2.0850 4.5908 46 1 8.6584 -5.1951 6.2920 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000010338588.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:34 Heat of formation + Delta-G solvation = 52.038897 kcal Electronic energy + Delta-G solvation = -31346.078703 eV Core-core repulsion = 27203.196794 eV Total energy + Delta-G solvation = -4142.881909 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.153 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.20205 -40.23595 -38.73176 -37.61844 -37.42031 -33.98307 -33.36381 -32.28466 -31.45189 -30.33600 -29.46858 -28.86199 -27.78145 -27.24590 -26.19795 -23.59274 -22.75319 -22.21927 -22.07025 -21.11265 -19.78717 -18.57628 -18.05249 -17.06861 -16.56218 -16.52844 -16.26920 -16.04166 -15.79814 -15.74558 -14.94788 -14.61720 -14.44107 -13.94664 -13.76543 -13.66820 -13.40327 -13.24940 -13.03947 -12.69176 -12.62682 -12.50608 -12.29510 -12.28530 -12.12253 -11.85359 -11.81046 -11.55587 -11.32284 -11.18806 -11.09982 -10.71136 -10.54189 -10.44982 -9.91771 -9.60960 -9.47377 -9.19491 -9.06422 -8.64346 -8.38939 -8.28727 -7.22411 -6.00593 -4.03780 1.03859 1.23592 1.49304 1.60938 2.38279 2.75909 2.94512 3.11853 3.31612 3.40257 3.44962 3.52120 3.96790 4.38396 4.48149 4.60685 4.64990 4.73987 4.86058 4.91302 4.92137 5.04845 5.17044 5.21216 5.27750 5.28779 5.34558 5.41724 5.45735 5.58121 5.61831 5.67089 5.76991 5.78891 5.86557 6.08649 6.14195 6.19201 6.29547 6.33529 6.40476 6.56777 6.65122 6.98592 7.17710 7.25084 7.38540 7.53893 7.59450 7.73796 7.94017 8.32177 8.50212 8.98863 9.59285 11.08589 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.013738 B = 0.003011 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.708787 B = 9297.416868 C = 9462.095404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.302 6.302 3 C 0.140 3.860 4 C -0.211 4.211 5 C -0.083 4.083 6 C -0.158 4.158 7 C -0.071 4.071 8 C -0.025 4.025 9 C -0.238 4.238 10 C 0.135 3.865 11 C -0.069 4.069 12 N -0.277 5.277 13 N -0.356 5.356 14 C 0.340 3.660 15 N -0.604 5.604 16 H 0.424 0.576 17 C 0.160 3.840 18 C -0.116 4.116 19 C -0.204 4.204 20 C 0.083 3.917 21 C -0.507 4.507 22 H 0.053 0.947 23 C 0.061 3.939 24 N -0.893 5.893 25 Si 0.893 3.107 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.283 1.283 29 C 0.561 3.439 30 O -0.471 6.471 31 H 0.099 0.901 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.118 0.882 44 H 0.039 0.961 45 H 0.039 0.961 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.179 21.117 -9.908 27.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.215 6.215 3 C 0.094 3.906 4 C -0.230 4.230 5 C -0.101 4.101 6 C -0.176 4.176 7 C -0.090 4.090 8 C -0.027 4.027 9 C -0.253 4.253 10 C -0.033 4.033 11 C -0.128 4.128 12 N -0.097 5.097 13 N -0.156 5.156 14 C 0.118 3.882 15 N -0.222 5.222 16 H 0.262 0.738 17 C 0.056 3.944 18 C -0.173 4.173 19 C -0.215 4.215 20 C 0.045 3.955 21 C -0.545 4.545 22 H 0.071 0.929 23 C -0.141 4.141 24 N -0.532 5.532 25 Si 0.720 3.280 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.210 1.210 29 C 0.359 3.641 30 O -0.339 6.339 31 H 0.117 0.883 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.146 0.854 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.086 0.914 43 H 0.137 0.863 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.884 18.923 -10.280 25.623 hybrid contribution -1.507 0.398 0.773 1.740 sum -15.391 19.321 -9.507 26.468 Atomic orbital electron populations 1.23075 0.78816 1.04042 1.01037 1.86239 1.20760 1.26430 1.88035 1.19171 0.91588 0.84303 0.95508 1.21169 0.99937 0.92255 1.09628 1.20952 0.94674 0.96795 0.97666 1.20980 0.93787 0.98271 1.04541 1.21187 0.99990 0.90599 0.97203 1.17206 0.88432 0.91410 1.05690 1.17494 1.13698 1.02481 0.91641 1.22285 0.94113 0.90692 0.96259 1.20184 1.00538 1.03128 0.88944 1.77564 1.20933 1.22513 0.88690 1.48164 1.39313 1.18823 1.09301 1.18858 0.95070 0.88788 0.85467 1.40769 1.48869 1.27194 1.05385 0.73782 1.20513 0.90364 0.91388 0.92179 1.21051 1.02247 1.04480 0.89536 1.20896 1.09059 0.98113 0.93460 1.18026 0.93563 0.93199 0.90692 1.21044 0.96931 1.12949 1.23567 0.92859 1.24946 0.94983 0.97445 0.96685 1.69949 1.11989 1.37837 1.33402 0.86520 0.80594 0.82247 0.78603 1.19829 1.20881 1.20956 1.17298 0.78144 0.83797 0.84863 1.90869 1.43876 1.22327 1.76863 0.88277 0.92805 0.92734 0.85545 0.86002 0.85884 0.85419 0.90222 0.90480 0.90425 0.89711 0.91368 0.86342 0.94297 0.94254 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.30 -3.59 9.95 -19.51 -0.19 -3.79 16 3 C 0.14 1.55 6.66 -38.91 -0.26 1.29 16 4 C -0.21 -1.81 9.03 -39.48 -0.36 -2.17 16 5 C -0.08 -0.63 10.04 -39.53 -0.40 -1.02 16 6 C -0.16 -1.25 10.03 -39.61 -0.40 -1.64 16 7 C -0.07 -0.69 9.78 -39.26 -0.38 -1.08 16 8 C -0.03 -0.30 5.39 -104.77 -0.56 -0.87 16 9 C -0.24 -3.58 5.10 -104.77 -0.53 -4.12 16 10 C 0.14 2.18 7.22 -82.15 -0.59 1.58 16 11 C -0.07 -0.80 10.26 36.01 0.37 -0.43 16 12 N -0.28 -5.68 12.58 33.81 0.43 -5.25 16 13 N -0.36 -7.61 3.80 -13.80 -0.05 -7.67 16 14 C 0.34 5.86 7.93 -152.78 -1.21 4.64 16 15 N -0.60 -8.80 5.41 -7.98 -0.04 -8.84 16 16 H 0.42 4.55 8.84 -40.82 -0.36 4.19 16 17 C 0.16 2.72 6.83 -81.68 -0.56 2.17 16 18 C -0.12 -1.57 9.28 36.01 0.33 -1.23 16 19 C -0.20 -4.56 5.06 -104.65 -0.53 -5.09 16 20 C 0.08 2.14 4.17 -29.04 -0.12 2.02 16 21 C -0.51 -14.32 8.96 -34.44 -0.31 -14.63 16 22 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 23 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 24 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 25 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 26 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 27 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 29 C 0.56 13.71 7.68 -15.23 -0.12 13.59 16 30 O -0.47 -13.37 17.10 5.08 0.09 -13.28 16 31 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 33 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 34 H 0.13 0.83 6.30 -52.49 -0.33 0.50 16 35 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 36 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 0.79 7.95 -51.93 -0.41 0.38 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.12 1.96 6.43 -51.93 -0.33 1.62 16 44 H 0.04 1.14 7.76 -51.93 -0.40 0.74 16 45 H 0.04 0.96 6.37 -51.93 -0.33 0.63 16 46 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 391.58 15.07 5.90 5.90 Total: -1.00 -37.10 391.58 -8.79 -45.89 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -5.89 Total: -0.19 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -4.73 Total: -4.16 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: 1.07 Total: -47.31 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.11 Total: -17.07 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.10 -8.79 -45.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010338588.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.929 kcal (2) G-P(sol) polarization free energy of solvation -37.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds