Wall clock time and date at job start Tue Mar 31 2020 05:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.52291 * 2 1 4 4 C 1.53043 * 109.49393 * 239.92231 * 2 1 3 5 5 C 1.53046 * 109.53700 * 178.68072 * 4 2 1 6 6 C 1.53195 * 109.30793 * 61.36640 * 5 4 2 7 7 N 1.46923 * 108.77575 * 305.36150 * 6 5 4 8 8 S 1.65606 * 120.63228 * 233.63022 * 7 6 5 9 9 O 1.42099 * 106.40067 * 23.52280 * 8 7 6 10 10 O 1.42096 * 106.40054 * 156.44473 * 8 7 6 11 11 C 1.76202 * 107.21732 * 269.98115 * 8 7 6 12 12 C 1.38378 * 119.84536 * 269.72219 * 11 8 7 13 13 C 1.37930 * 120.14834 * 179.76514 * 12 11 8 14 14 C 1.39664 * 119.84823 * 0.49380 * 13 12 11 15 15 C 1.47665 * 120.15490 * 179.78695 * 14 13 12 16 16 O 1.21504 * 119.99931 * 179.97438 * 15 14 13 17 17 O 1.34731 * 119.99745 * 359.97407 * 15 14 13 18 18 C 1.34861 * 116.99879 * 179.97438 * 17 15 14 19 19 H 1.07999 * 119.99608 * 0.02562 * 18 17 15 20 20 C 1.38812 * 119.99599 * 180.02562 * 18 17 15 21 21 N 1.31409 * 120.00707 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99599 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47035 * 59.99507 * 22 20 18 24 24 H 1.48495 * 109.47361 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47048 * 300.00185 * 22 20 18 26 26 C 1.39664 * 119.69465 * 359.76493 * 14 13 12 27 27 C 1.37932 * 119.84276 * 359.97438 * 26 14 13 28 28 C 1.46931 * 118.73730 * 53.61542 * 7 6 5 29 29 H 1.09000 * 109.46682 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46678 * 300.07313 * 1 2 3 31 31 H 1.08991 * 109.47219 * 60.07603 * 1 2 3 32 32 H 1.08998 * 109.46060 * 58.66545 * 4 2 1 33 33 H 1.08998 * 109.45045 * 298.69528 * 4 2 1 34 34 H 1.08990 * 109.49711 * 181.31709 * 5 4 2 35 35 H 1.08999 * 109.49785 * 301.41955 * 5 4 2 36 36 H 1.08996 * 109.58476 * 65.15647 * 6 5 4 37 37 H 1.09006 * 109.58092 * 185.57719 * 6 5 4 38 38 H 1.07991 * 119.92149 * 0.02562 * 12 11 8 39 39 H 1.08006 * 120.07674 * 180.24978 * 13 12 11 40 40 H 0.96998 * 120.00106 * 180.02562 * 21 20 18 41 41 H 1.07997 * 120.08034 * 179.97438 * 26 14 13 42 42 H 1.08004 * 119.92478 * 179.97438 * 27 26 14 43 43 H 1.09001 * 109.58511 * 186.59744 * 28 7 6 44 44 H 1.08996 * 109.70113 * 66.24209 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7230 -1.2484 5 6 3.5709 -0.6949 -1.2662 6 6 4.1053 -1.4267 -0.0310 7 7 3.5047 -0.8292 1.1694 8 16 4.4589 -0.2843 2.4084 9 8 5.7328 -0.0086 1.8423 10 8 3.6925 0.6865 3.1079 11 6 4.6895 -1.6316 3.5203 12 6 3.8032 -1.8209 4.5660 13 6 3.9751 -2.8763 5.4373 14 6 5.0525 -3.7488 5.2683 15 6 5.2456 -4.8782 6.1999 16 8 6.1836 -5.6358 6.0500 17 8 4.3816 -5.0684 7.2161 18 6 4.6150 -6.1184 8.0296 19 1 5.4642 -6.7613 7.8513 20 6 3.7636 -6.3726 9.0961 21 7 2.7299 -5.5907 9.3127 22 14 4.0872 -7.8266 10.2234 23 1 5.4212 -7.6738 10.8577 24 1 3.0411 -7.8794 11.2760 25 1 4.0564 -9.0829 9.4322 26 6 5.9462 -3.5486 4.2139 27 6 5.7592 -2.4922 3.3469 28 6 2.0413 -0.7239 1.2495 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5150 0.8893 31 1 -0.3633 0.5126 -0.8906 32 1 1.6581 -0.2244 -2.1389 33 1 1.6967 -1.7572 -1.2352 34 1 3.9333 -1.1895 -2.1672 35 1 3.9159 0.3389 -1.2541 36 1 3.8376 -2.4818 -0.0871 37 1 5.1896 -1.3246 0.0135 38 1 2.9728 -1.1433 4.6977 39 1 3.2803 -3.0254 6.2507 40 1 2.1352 -5.7682 10.0582 41 1 6.7816 -4.2192 4.0777 42 1 6.4497 -2.3359 2.5313 43 1 1.7638 -0.1581 2.1389 44 1 1.6034 -1.7208 1.2991 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000010697724.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:44 Heat of formation + Delta-G solvation = -135.440680 kcal Electronic energy + Delta-G solvation = -28975.809197 eV Core-core repulsion = 24792.115669 eV Total energy + Delta-G solvation = -4183.693528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 353.118 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -39.64132 -39.03617 -38.25465 -37.40063 -35.94118 -35.32780 -33.79066 -32.43340 -32.12446 -31.32906 -30.92228 -27.11324 -25.96827 -24.86736 -23.96676 -22.67561 -22.40972 -20.55892 -20.43041 -19.11184 -18.05396 -17.93830 -17.68915 -17.02691 -16.27089 -15.49803 -15.20328 -14.96483 -14.71959 -14.65707 -14.55193 -14.48471 -14.36441 -14.20737 -13.88684 -13.42501 -13.33793 -12.97501 -12.76728 -12.59178 -12.41657 -12.28811 -12.17265 -12.13565 -11.88660 -11.78307 -11.41101 -11.36638 -11.16311 -11.11661 -10.92332 -10.82077 -10.65575 -10.61871 -10.58441 -10.04794 -9.35244 -9.25630 -9.12789 -8.94094 -8.77571 -6.65218 -4.25299 0.20547 0.62119 1.45120 2.69973 3.01339 3.07531 3.11788 3.22372 3.62075 3.74784 4.08352 4.13360 4.29402 4.32003 4.48447 4.54449 4.71476 4.81890 4.89101 4.95011 4.97115 5.02758 5.13300 5.24811 5.33885 5.40199 5.42665 5.47799 5.48659 5.50324 5.63366 5.72224 5.77643 5.80921 5.80955 5.89025 5.99550 6.02646 6.08032 6.19662 6.33497 6.47632 6.76754 6.92524 7.18412 7.72223 8.50203 8.82499 9.60690 10.51361 Molecular weight = 353.12amu Principal moments of inertia in cm(-1) A = 0.017477 B = 0.002403 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.756399 B =11647.801431 C =12237.373799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 H 0.076 0.924 4 C -0.113 4.113 5 C -0.132 4.132 6 C 0.116 3.884 7 N -0.997 5.997 8 S 2.694 3.306 9 O -0.958 6.958 10 O -0.956 6.956 11 C -0.675 4.675 12 C -0.031 4.031 13 C -0.098 4.098 14 C -0.025 4.025 15 C 0.415 3.585 16 O -0.549 6.549 17 O -0.197 6.197 18 C -0.371 4.371 19 H 0.101 0.899 20 C 0.042 3.958 21 N -0.850 5.850 22 Si 0.949 3.051 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.267 1.267 26 C -0.096 4.096 27 C -0.033 4.033 28 C 0.120 3.880 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.141 0.859 39 H 0.151 0.849 40 H 0.275 0.725 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.095 0.905 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.055 10.494 -19.854 22.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 H 0.094 0.906 4 C -0.151 4.151 5 C -0.171 4.171 6 C -0.009 4.009 7 N -0.835 5.835 8 S 2.787 3.213 9 O -0.948 6.948 10 O -0.946 6.946 11 C -0.763 4.763 12 C -0.050 4.050 13 C -0.117 4.117 14 C -0.026 4.026 15 C 0.264 3.736 16 O -0.448 6.448 17 O -0.103 6.103 18 C -0.446 4.446 19 H 0.118 0.882 20 C -0.164 4.164 21 N -0.485 5.485 22 Si 0.773 3.227 23 H -0.192 1.192 24 H -0.201 1.201 25 H -0.192 1.192 26 C -0.115 4.115 27 C -0.053 4.053 28 C -0.005 4.005 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.159 0.841 39 H 0.169 0.831 40 H 0.085 0.915 41 H 0.161 0.839 42 H 0.158 0.842 43 H 0.113 0.887 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.681 11.143 -19.597 22.842 hybrid contribution 0.042 -1.482 0.915 1.742 sum -3.638 9.661 -18.681 21.344 Atomic orbital electron populations 1.21791 0.94321 1.02229 1.02192 1.21466 0.95895 1.00175 0.94925 0.90581 1.21565 0.95203 1.00925 0.97414 1.21873 0.96164 1.01531 0.97527 1.21507 0.98490 0.97251 0.83700 1.57725 1.16395 1.78303 1.31110 1.01847 0.72966 0.73855 0.72628 1.93558 1.40239 1.83424 1.77562 1.93565 1.71315 1.56453 1.73270 1.30903 1.06307 1.22542 1.16577 1.20832 0.96558 0.95917 0.91727 1.21755 0.97334 0.93239 0.99348 1.19807 0.95056 0.93754 0.94030 1.20671 0.83488 0.86060 0.83379 1.90642 1.32675 1.47281 1.74226 1.83878 1.46940 1.45658 1.33840 1.21374 1.12903 1.03995 1.06323 0.88186 1.25464 0.94783 0.99098 0.97067 1.69954 1.13074 1.36519 1.28956 0.85646 0.78607 0.79663 0.78786 1.19190 1.20115 1.19214 1.21337 0.99141 0.97602 0.93442 1.20721 0.94443 0.92011 0.98079 1.21585 0.78234 1.01341 0.99373 0.92333 0.92149 0.92346 0.91719 0.91597 0.90597 0.91342 0.91070 0.88745 0.84125 0.83125 0.91484 0.83936 0.84181 0.88681 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.20 37.16 0.34 -0.54 16 2 C -0.10 -0.75 2.87 -90.50 -0.26 -1.01 16 3 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.11 -0.71 5.17 -26.68 -0.14 -0.85 16 5 C -0.13 -0.87 6.08 -26.61 -0.16 -1.04 16 6 C 0.12 0.92 6.47 -3.71 -0.02 0.90 16 7 N -1.00 -9.63 3.29 -113.52 -0.37 -10.00 16 8 S 2.69 33.89 5.73 -107.50 -0.62 33.27 16 9 O -0.96 -13.71 15.86 -57.17 -0.91 -14.61 16 10 O -0.96 -13.98 15.85 -57.17 -0.91 -14.88 16 11 C -0.68 -9.50 5.98 -39.48 -0.24 -9.74 16 12 C -0.03 -0.46 9.50 -39.64 -0.38 -0.84 16 13 C -0.10 -1.74 9.62 -39.16 -0.38 -2.12 16 14 C -0.02 -0.49 5.87 -104.98 -0.62 -1.11 16 15 C 0.42 10.38 7.84 34.58 0.27 10.65 16 16 O -0.55 -14.73 15.59 -19.27 -0.30 -15.03 16 17 O -0.20 -5.48 8.99 -21.65 -0.19 -5.67 16 18 C -0.37 -10.57 9.65 30.94 0.30 -10.28 16 19 H 0.10 2.86 6.86 -52.49 -0.36 2.50 16 20 C 0.04 1.13 5.50 -17.52 -0.10 1.04 16 21 N -0.85 -23.63 13.67 55.49 0.76 -22.87 16 22 Si 0.95 20.33 29.55 -169.99 -5.02 15.31 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 24 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 25 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 26 C -0.10 -1.63 9.60 -39.16 -0.38 -2.01 16 27 C -0.03 -0.47 9.50 -39.64 -0.38 -0.85 16 28 C 0.12 1.01 5.76 -3.71 -0.02 0.99 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.76 6.92 -51.93 -0.36 0.40 16 38 H 0.14 1.76 7.60 -52.49 -0.40 1.36 16 39 H 0.15 2.78 7.61 -52.48 -0.40 2.39 16 40 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.14 2.33 7.65 -52.49 -0.40 1.93 16 42 H 0.14 1.61 7.60 -52.48 -0.40 1.21 16 43 H 0.09 0.83 6.92 -51.93 -0.36 0.48 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 379.33 15.07 5.72 5.72 Total: -1.00 -34.26 379.33 -10.03 -44.30 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.04 Total: 1.27 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -2.15 Total: -16.80 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.38 Total: -32.87 kcal Atomic # 8 Polarization: -47.89 SS G_CDS: -2.31 Total: -50.20 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 33.89 SS G_CDS: -0.62 Total: 33.27 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.26 -10.03 -44.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010697724.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.145 kcal (2) G-P(sol) polarization free energy of solvation -34.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds