Wall clock time and date at job start Tue Mar 31 2020 05:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.49908 * 2 1 4 4 C 1.53041 * 109.52102 * 120.08050 * 2 1 3 5 5 C 1.53040 * 109.53567 * 181.33369 * 4 2 1 6 6 C 1.53193 * 109.31153 * 298.63320 * 5 4 2 7 7 N 1.46920 * 108.77550 * 54.63854 * 6 5 4 8 8 S 1.65605 * 120.63255 * 126.36997 * 7 6 5 9 9 O 1.42099 * 106.40211 * 23.55709 * 8 7 6 10 10 O 1.42101 * 106.40140 * 156.48376 * 8 7 6 11 11 C 1.76202 * 107.21377 * 270.02064 * 8 7 6 12 12 C 1.38375 * 119.84505 * 269.72525 * 11 8 7 13 13 C 1.37934 * 120.15355 * 179.73054 * 12 11 8 14 14 C 1.39668 * 119.84207 * 0.52110 * 13 12 11 15 15 C 1.47668 * 120.15214 * 179.77394 * 14 13 12 16 16 O 1.21507 * 119.99953 * 179.97438 * 15 14 13 17 17 O 1.34738 * 120.00096 * 359.97438 * 15 14 13 18 18 C 1.34853 * 116.99951 * 179.97438 * 17 15 14 19 19 H 1.07997 * 119.99858 * 0.02562 * 18 17 15 20 20 C 1.38808 * 119.99716 * 180.02562 * 18 17 15 21 21 N 1.31419 * 119.99691 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00134 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47168 * 90.00423 * 22 20 18 24 24 H 1.48506 * 109.47096 * 210.00276 * 22 20 18 25 25 H 1.48498 * 109.47053 * 329.99945 * 22 20 18 26 26 C 1.39662 * 119.69351 * 359.75276 * 14 13 12 27 27 C 1.37924 * 119.84823 * 359.97438 * 26 14 13 28 28 C 1.46925 * 118.73823 * 306.39057 * 7 6 5 29 29 H 1.09001 * 109.47302 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46897 * 300.00381 * 1 2 3 31 31 H 1.09001 * 109.46854 * 59.99814 * 1 2 3 32 32 H 1.08997 * 109.46292 * 301.35488 * 4 2 1 33 33 H 1.09004 * 109.45911 * 61.31329 * 4 2 1 34 34 H 1.09005 * 109.49582 * 178.68574 * 5 4 2 35 35 H 1.08995 * 109.50238 * 58.58527 * 5 4 2 36 36 H 1.09004 * 109.58721 * 294.84822 * 6 5 4 37 37 H 1.09002 * 109.58872 * 174.42347 * 6 5 4 38 38 H 1.07999 * 119.92254 * 359.97438 * 12 11 8 39 39 H 1.08005 * 120.08199 * 180.27556 * 13 12 11 40 40 H 0.97000 * 119.99539 * 179.97438 * 21 20 18 41 41 H 1.08010 * 120.07629 * 179.97438 * 26 14 13 42 42 H 1.08005 * 119.92915 * 179.97438 * 27 26 14 43 43 H 1.09000 * 109.58550 * 293.82045 * 28 7 6 44 44 H 1.09007 * 109.70721 * 173.46489 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7230 1.2482 5 6 3.5715 -0.6942 1.2655 6 6 4.1059 -1.4256 0.0300 7 7 3.5047 -0.8282 -1.1701 8 16 4.4583 -0.2827 -2.4093 9 8 5.6874 -0.9890 -2.3106 10 8 3.6465 -0.2945 -3.5755 11 6 4.8280 1.4079 -2.0775 12 6 3.9955 2.4023 -2.5601 13 6 4.2758 3.7275 -2.2994 14 6 5.4088 4.0650 -1.5558 15 6 5.7181 5.4818 -1.2770 16 8 6.7043 5.7723 -0.6294 17 8 4.9067 6.4524 -1.7408 18 6 5.2461 7.7248 -1.4503 19 1 6.1343 7.9278 -0.8704 20 6 4.4539 8.7735 -1.8967 21 7 4.7849 10.0135 -1.6140 22 14 2.9173 8.4223 -2.8991 23 1 1.7569 8.2619 -1.9865 24 1 2.6635 9.5525 -3.8285 25 1 3.1099 7.1736 -3.6793 26 6 6.2477 3.0564 -1.0767 27 6 5.9523 1.7352 -1.3401 28 6 2.0414 -0.7234 -1.2497 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6588 -0.2247 2.1389 33 1 1.6978 -1.7573 1.2351 34 1 3.9345 -1.1888 2.1664 35 1 3.9161 0.3398 1.2535 36 1 3.8386 -2.4808 0.0860 37 1 5.1902 -1.3230 -0.0148 38 1 3.1222 2.1401 -3.1388 39 1 3.6228 4.5025 -2.6729 40 1 4.2315 10.7464 -1.9263 41 1 7.1258 3.3105 -0.5014 42 1 6.6003 0.9541 -0.9706 43 1 1.6057 -1.7214 -1.2982 44 1 1.7611 -0.1589 -2.1391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000010697728.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:49 Heat of formation + Delta-G solvation = -132.260368 kcal Electronic energy + Delta-G solvation = -29527.363921 eV Core-core repulsion = 25343.808301 eV Total energy + Delta-G solvation = -4183.555619 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 353.118 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -39.83366 -39.08807 -38.43722 -37.48463 -36.03018 -35.53138 -33.82323 -32.58959 -32.15907 -31.50580 -31.06665 -27.14521 -26.18212 -24.91602 -23.95231 -22.75166 -22.47177 -20.60500 -20.30169 -19.15131 -18.34630 -18.13811 -17.72238 -17.15602 -16.35954 -15.62212 -15.35405 -15.04702 -14.94577 -14.71364 -14.67161 -14.52431 -14.33502 -14.12597 -13.88620 -13.57595 -13.24546 -13.01926 -12.94328 -12.59965 -12.58460 -12.34890 -12.24197 -12.21121 -12.19003 -11.94862 -11.48778 -11.45051 -11.26809 -11.24345 -11.01097 -10.84546 -10.69564 -10.67789 -10.54456 -9.91192 -9.46285 -9.39645 -9.23936 -9.08222 -8.88289 -6.60422 -4.29459 0.11252 0.49139 1.30770 2.59403 2.95634 3.10988 3.13851 3.22726 3.54307 3.83940 3.93886 4.04796 4.06535 4.24014 4.47006 4.50566 4.66646 4.74231 4.77090 4.82104 4.93725 4.98351 5.10395 5.21924 5.27165 5.31633 5.32587 5.37775 5.42348 5.46766 5.59272 5.62919 5.69074 5.71522 5.80186 5.81689 5.88126 5.96519 6.03602 6.07635 6.23851 6.27769 6.50367 6.76857 7.49816 7.81098 8.41021 8.75973 9.43590 10.46434 Molecular weight = 353.12amu Principal moments of inertia in cm(-1) A = 0.013059 B = 0.003056 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.669313 B = 9159.926444 C = 9779.521221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 H 0.079 0.921 4 C -0.111 4.111 5 C -0.139 4.139 6 C 0.120 3.880 7 N -0.997 5.997 8 S 2.693 3.307 9 O -0.956 6.956 10 O -0.955 6.955 11 C -0.673 4.673 12 C -0.030 4.030 13 C -0.102 4.102 14 C -0.026 4.026 15 C 0.429 3.571 16 O -0.531 6.531 17 O -0.235 6.235 18 C -0.370 4.370 19 H 0.114 0.886 20 C 0.066 3.934 21 N -0.857 5.857 22 Si 0.906 3.094 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.257 1.257 26 C -0.093 4.093 27 C -0.030 4.030 28 C 0.125 3.875 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.141 0.859 39 H 0.145 0.855 40 H 0.284 0.716 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.074 0.926 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.521 -24.219 3.219 25.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.131 4.131 3 H 0.097 0.903 4 C -0.149 4.149 5 C -0.178 4.178 6 C -0.005 4.005 7 N -0.834 5.834 8 S 2.785 3.215 9 O -0.946 6.946 10 O -0.946 6.946 11 C -0.761 4.761 12 C -0.049 4.049 13 C -0.122 4.122 14 C -0.028 4.028 15 C 0.277 3.723 16 O -0.428 6.428 17 O -0.143 6.143 18 C -0.445 4.445 19 H 0.131 0.869 20 C -0.140 4.140 21 N -0.495 5.495 22 Si 0.730 3.270 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.181 1.181 26 C -0.112 4.112 27 C -0.049 4.049 28 C 0.000 4.000 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.159 0.841 39 H 0.163 0.837 40 H 0.095 0.905 41 H 0.163 0.837 42 H 0.160 0.840 43 H 0.093 0.907 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.043 -24.375 2.626 25.802 hybrid contribution -0.603 0.991 0.065 1.162 sum -8.646 -23.384 2.691 25.076 Atomic orbital electron populations 1.21784 0.94345 1.02013 1.02358 1.21553 0.95989 1.00500 0.95098 0.90281 1.21522 0.95142 1.00669 0.97522 1.21956 0.96348 1.01796 0.97671 1.21476 0.98133 0.97332 0.83519 1.57769 1.16149 1.74787 1.34734 1.01942 0.72989 0.73670 0.72873 1.93571 1.43763 1.71145 1.86143 1.93574 1.69181 1.87053 1.44769 1.30958 1.06278 1.24571 1.14257 1.20809 0.97269 0.92088 0.94766 1.21664 0.96727 0.96747 0.97025 1.19762 0.95046 0.91623 0.96328 1.20410 0.83636 0.85761 0.82542 1.90691 1.28418 1.83400 1.40295 1.83517 1.48831 1.16916 1.65014 1.20799 1.12469 0.76776 1.34473 0.86856 1.24629 0.98929 0.93597 0.96805 1.69587 1.38713 0.98387 1.42795 0.86205 0.81574 0.79058 0.80150 1.19495 1.20339 1.18134 1.21353 0.99562 0.91338 0.98924 1.20748 0.93783 0.96926 0.93453 1.21546 0.78138 1.01543 0.98798 0.92493 0.92210 0.92215 0.91635 0.91776 0.90589 0.91064 0.90768 0.89040 0.84112 0.83701 0.90528 0.83727 0.84027 0.90739 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.20 37.16 0.34 -0.54 16 2 C -0.11 -0.79 2.87 -90.50 -0.26 -1.05 16 3 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 4 C -0.11 -0.70 5.17 -26.69 -0.14 -0.83 16 5 C -0.14 -0.91 6.08 -26.61 -0.16 -1.07 16 6 C 0.12 0.87 6.38 -3.71 -0.02 0.85 16 7 N -1.00 -8.81 3.29 -113.52 -0.37 -9.18 16 8 S 2.69 31.58 5.69 -107.50 -0.61 30.96 16 9 O -0.96 -13.01 15.98 -57.17 -0.91 -13.93 16 10 O -0.96 -13.18 15.98 -57.17 -0.91 -14.09 16 11 C -0.67 -8.65 5.98 -39.48 -0.24 -8.89 16 12 C -0.03 -0.40 9.50 -39.64 -0.38 -0.78 16 13 C -0.10 -1.65 9.62 -39.16 -0.38 -2.02 16 14 C -0.03 -0.48 5.87 -104.98 -0.62 -1.09 16 15 C 0.43 10.14 7.84 34.58 0.27 10.41 16 16 O -0.53 -13.98 15.59 -19.27 -0.30 -14.28 16 17 O -0.23 -6.02 7.82 -21.65 -0.17 -6.19 16 18 C -0.37 -10.63 10.11 30.94 0.31 -10.32 16 19 H 0.11 3.59 7.09 -52.49 -0.37 3.22 16 20 C 0.07 1.82 5.50 -17.52 -0.10 1.73 16 21 N -0.86 -24.30 13.96 55.49 0.77 -23.52 16 22 Si 0.91 20.30 28.62 -169.99 -4.86 15.43 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 26 C -0.09 -1.46 9.60 -39.16 -0.38 -1.83 16 27 C -0.03 -0.39 9.50 -39.64 -0.38 -0.77 16 28 C 0.12 0.95 5.66 -3.71 -0.02 0.93 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.66 7.13 -51.93 -0.37 0.29 16 38 H 0.14 1.56 7.60 -52.49 -0.40 1.16 16 39 H 0.15 2.30 7.61 -52.48 -0.40 1.90 16 40 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.14 2.21 7.65 -52.48 -0.40 1.81 16 42 H 0.14 1.49 7.60 -52.48 -0.40 1.09 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.09 0.71 7.13 -51.92 -0.37 0.34 16 LS Contribution 378.65 15.07 5.71 5.71 Total: -1.00 -33.96 378.65 -9.87 -43.83 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -6.07 Total: 0.55 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -2.13 Total: -15.29 kcal Atomic # 7 Polarization: -33.10 SS G_CDS: 0.40 Total: -32.70 kcal Atomic # 8 Polarization: -46.20 SS G_CDS: -2.30 Total: -48.49 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.86 Total: 15.43 kcal Atomic # 16 Polarization: 31.58 SS G_CDS: -0.61 Total: 30.96 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.96 -9.87 -43.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010697728.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.427 kcal (2) G-P(sol) polarization free energy of solvation -33.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds