Wall clock time and date at job start Tue Mar 31 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.49908 * 2 1 4 4 C 1.53041 * 109.52102 * 120.08050 * 2 1 3 5 5 C 1.53040 * 109.53567 * 181.33369 * 4 2 1 6 6 C 1.53193 * 109.31153 * 298.63320 * 5 4 2 7 7 N 1.46920 * 108.77550 * 54.63854 * 6 5 4 8 8 S 1.65605 * 120.63255 * 126.36997 * 7 6 5 9 9 O 1.42099 * 106.40211 * 23.55709 * 8 7 6 10 10 O 1.42101 * 106.40140 * 156.48376 * 8 7 6 11 11 C 1.76202 * 107.21377 * 270.02064 * 8 7 6 12 12 C 1.38375 * 119.84505 * 269.72525 * 11 8 7 13 13 C 1.37934 * 120.15355 * 179.73054 * 12 11 8 14 14 C 1.39668 * 119.84207 * 0.52110 * 13 12 11 15 15 C 1.47668 * 120.15214 * 179.77394 * 14 13 12 16 16 O 1.21507 * 119.99953 * 179.97438 * 15 14 13 17 17 O 1.34738 * 120.00096 * 359.97438 * 15 14 13 18 18 C 1.34853 * 116.99951 * 179.97438 * 17 15 14 19 19 H 1.07997 * 119.99858 * 0.02562 * 18 17 15 20 20 C 1.38808 * 119.99716 * 180.02562 * 18 17 15 21 21 N 1.31419 * 119.99691 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00134 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47168 * 90.00423 * 22 20 18 24 24 H 1.48506 * 109.47096 * 210.00276 * 22 20 18 25 25 H 1.48498 * 109.47053 * 329.99945 * 22 20 18 26 26 C 1.39662 * 119.69351 * 359.75276 * 14 13 12 27 27 C 1.37924 * 119.84823 * 359.97438 * 26 14 13 28 28 C 1.46925 * 118.73823 * 306.39057 * 7 6 5 29 29 H 1.09001 * 109.47302 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46897 * 300.00381 * 1 2 3 31 31 H 1.09001 * 109.46854 * 59.99814 * 1 2 3 32 32 H 1.08997 * 109.46292 * 301.35488 * 4 2 1 33 33 H 1.09004 * 109.45911 * 61.31329 * 4 2 1 34 34 H 1.09005 * 109.49582 * 178.68574 * 5 4 2 35 35 H 1.08995 * 109.50238 * 58.58527 * 5 4 2 36 36 H 1.09004 * 109.58721 * 294.84822 * 6 5 4 37 37 H 1.09002 * 109.58872 * 174.42347 * 6 5 4 38 38 H 1.07999 * 119.92254 * 359.97438 * 12 11 8 39 39 H 1.08005 * 120.08199 * 180.27556 * 13 12 11 40 40 H 0.97000 * 119.99539 * 179.97438 * 21 20 18 41 41 H 1.08010 * 120.07629 * 179.97438 * 26 14 13 42 42 H 1.08005 * 119.92915 * 179.97438 * 27 26 14 43 43 H 1.09000 * 109.58550 * 293.82045 * 28 7 6 44 44 H 1.09007 * 109.70721 * 173.46489 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7230 1.2482 5 6 3.5715 -0.6942 1.2655 6 6 4.1059 -1.4256 0.0300 7 7 3.5047 -0.8282 -1.1701 8 16 4.4583 -0.2827 -2.4093 9 8 5.6874 -0.9890 -2.3106 10 8 3.6465 -0.2945 -3.5755 11 6 4.8280 1.4079 -2.0775 12 6 3.9955 2.4023 -2.5601 13 6 4.2758 3.7275 -2.2994 14 6 5.4088 4.0650 -1.5558 15 6 5.7181 5.4818 -1.2770 16 8 6.7043 5.7723 -0.6294 17 8 4.9067 6.4524 -1.7408 18 6 5.2461 7.7248 -1.4503 19 1 6.1343 7.9278 -0.8704 20 6 4.4539 8.7735 -1.8967 21 7 4.7849 10.0135 -1.6140 22 14 2.9173 8.4223 -2.8991 23 1 1.7569 8.2619 -1.9865 24 1 2.6635 9.5525 -3.8285 25 1 3.1099 7.1736 -3.6793 26 6 6.2477 3.0564 -1.0767 27 6 5.9523 1.7352 -1.3401 28 6 2.0414 -0.7234 -1.2497 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6588 -0.2247 2.1389 33 1 1.6978 -1.7573 1.2351 34 1 3.9345 -1.1888 2.1664 35 1 3.9161 0.3398 1.2535 36 1 3.8386 -2.4808 0.0860 37 1 5.1902 -1.3230 -0.0148 38 1 3.1222 2.1401 -3.1388 39 1 3.6228 4.5025 -2.6729 40 1 4.2315 10.7464 -1.9263 41 1 7.1258 3.3105 -0.5014 42 1 6.6003 0.9541 -0.9706 43 1 1.6057 -1.7214 -1.2982 44 1 1.7611 -0.1589 -2.1391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000010697728.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:48 Heat of formation + Delta-G solvation = -154.201393 kcal Electronic energy + Delta-G solvation = -29528.315355 eV Core-core repulsion = 25343.808301 eV Total energy + Delta-G solvation = -4184.507053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 353.118 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.57381 -39.93647 -39.64495 -38.49754 -37.54557 -37.04823 -34.64964 -34.40852 -32.86959 -32.70835 -32.28193 -28.11400 -27.64745 -25.64716 -25.37534 -23.95494 -23.03292 -22.13607 -21.06278 -20.32171 -20.00541 -19.38983 -18.97485 -18.40142 -17.42960 -17.17259 -16.91098 -16.40332 -16.02742 -15.85300 -15.73353 -15.43410 -15.12317 -15.02661 -14.84866 -14.70905 -14.54108 -14.39835 -14.20273 -13.95280 -13.61644 -13.37892 -13.29955 -13.26879 -13.01588 -12.86159 -12.58108 -12.54593 -12.47355 -12.38454 -12.23341 -11.94258 -11.90646 -11.68292 -11.43501 -11.36895 -11.20518 -10.93411 -10.64741 -10.26065 -9.97768 -8.65719 -6.51167 -0.97016 -0.66909 0.11172 1.20586 1.29519 1.42839 1.50364 1.86223 2.09680 2.21969 2.39887 2.64119 2.86207 3.09986 3.56889 3.65422 3.72238 3.91362 3.95597 4.00614 4.09332 4.14919 4.20831 4.26759 4.40969 4.47126 4.60765 4.70741 4.74180 4.81293 4.81967 4.85745 4.89694 4.94285 4.99138 5.10738 5.14755 5.22260 5.29968 5.34411 5.34774 5.46736 5.55099 5.56765 5.63891 5.76669 6.33861 6.67664 7.38130 8.46375 Molecular weight = 353.12amu Principal moments of inertia in cm(-1) A = 0.013059 B = 0.003056 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.669313 B = 9159.926444 C = 9779.521221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 H 0.062 0.938 4 C -0.111 4.111 5 C -0.138 4.138 6 C 0.112 3.888 7 N -0.988 5.988 8 S 2.713 3.287 9 O -0.971 6.971 10 O -0.971 6.971 11 C -0.661 4.661 12 C -0.025 4.025 13 C -0.099 4.099 14 C -0.060 4.060 15 C 0.438 3.562 16 O -0.565 6.565 17 O -0.239 6.239 18 C -0.410 4.410 19 H 0.061 0.939 20 C 0.021 3.979 21 N -0.905 5.905 22 Si 0.979 3.021 23 H -0.254 1.254 24 H -0.262 1.262 25 H -0.246 1.246 26 C -0.091 4.091 27 C -0.022 4.022 28 C 0.117 3.883 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.171 0.829 39 H 0.147 0.853 40 H 0.294 0.706 41 H 0.143 0.857 42 H 0.173 0.827 43 H 0.094 0.906 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.945 -28.183 2.441 30.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.131 4.131 3 H 0.081 0.919 4 C -0.148 4.148 5 C -0.177 4.177 6 C -0.012 4.012 7 N -0.828 5.828 8 S 2.802 3.198 9 O -0.961 6.961 10 O -0.962 6.962 11 C -0.746 4.746 12 C -0.043 4.043 13 C -0.118 4.118 14 C -0.061 4.061 15 C 0.286 3.714 16 O -0.463 6.463 17 O -0.148 6.148 18 C -0.485 4.485 19 H 0.078 0.922 20 C -0.181 4.181 21 N -0.544 5.544 22 Si 0.798 3.202 23 H -0.178 1.178 24 H -0.187 1.187 25 H -0.170 1.170 26 C -0.110 4.110 27 C -0.040 4.040 28 C -0.007 4.007 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.189 0.811 39 H 0.164 0.836 40 H 0.104 0.896 41 H 0.161 0.839 42 H 0.191 0.809 43 H 0.112 0.888 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.440 -28.328 1.864 30.248 hybrid contribution 0.236 1.871 0.414 1.930 sum -10.204 -26.457 2.278 28.448 Atomic orbital electron populations 1.21773 0.93552 1.02778 1.02257 1.21539 0.96650 0.99622 0.95314 0.91902 1.21536 0.94878 1.01345 0.97058 1.21963 0.96594 1.01031 0.98121 1.21740 0.98293 0.98415 0.82772 1.57603 1.16509 1.73933 1.34742 1.01429 0.72631 0.72757 0.72972 1.93555 1.44989 1.70972 1.86567 1.93556 1.69432 1.86943 1.46221 1.31478 1.05288 1.25851 1.11947 1.21107 0.98121 0.90774 0.94336 1.21726 0.95660 0.98173 0.96248 1.19571 0.97880 0.88553 1.00140 1.21559 0.82228 0.87519 0.80046 1.90658 1.29797 1.84470 1.41358 1.83520 1.49278 1.15930 1.66026 1.20410 1.12380 0.78834 1.36887 0.92156 1.25618 1.02318 0.92774 0.97361 1.69674 1.40689 0.99584 1.44406 0.85143 0.76681 0.79704 0.78689 1.17850 1.18666 1.16951 1.21452 0.99055 0.91966 0.98530 1.21053 0.94102 0.96228 0.92667 1.21777 0.77130 1.02812 0.99013 0.91290 0.92409 0.92289 0.91719 0.90416 0.89007 0.92548 0.88695 0.88884 0.81143 0.83559 0.89628 0.83894 0.80937 0.88762 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.20 71.98 0.66 -0.70 16 2 C -0.11 -1.26 2.87 -10.72 -0.03 -1.29 16 3 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.11 -1.05 5.17 30.62 0.16 -0.89 16 5 C -0.14 -1.40 6.08 30.67 0.19 -1.21 16 6 C 0.11 1.21 6.38 86.36 0.55 1.76 16 7 N -0.99 -13.99 3.29 -513.07 -1.69 -15.68 16 8 S 2.71 54.59 5.69 -56.49 -0.32 54.26 16 9 O -0.97 -23.20 15.98 -128.00 -2.05 -25.25 16 10 O -0.97 -23.52 15.98 -128.00 -2.05 -25.56 16 11 C -0.66 -15.07 5.98 22.34 0.13 -14.93 16 12 C -0.02 -0.59 9.50 22.23 0.21 -0.38 16 13 C -0.10 -3.05 9.62 22.54 0.22 -2.84 16 14 C -0.06 -2.23 5.87 -20.10 -0.12 -2.35 16 15 C 0.44 21.67 7.84 70.31 0.55 22.23 16 16 O -0.57 -31.69 15.59 19.81 0.31 -31.38 16 17 O -0.24 -12.79 7.82 11.29 0.09 -12.70 16 18 C -0.41 -25.09 10.11 67.96 0.69 -24.41 16 19 H 0.06 4.21 7.09 -2.91 -0.02 4.18 16 20 C 0.02 1.20 5.50 84.89 0.47 1.66 16 21 N -0.91 -53.63 13.96 21.63 0.30 -53.33 16 22 Si 0.98 41.95 28.62 68.60 1.96 43.92 16 23 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 24 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 25 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 26 C -0.09 -2.81 9.60 22.54 0.22 -2.59 16 27 C -0.02 -0.52 9.50 22.23 0.21 -0.30 16 28 C 0.12 1.38 5.66 86.36 0.49 1.87 16 29 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 34 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.09 1.01 7.13 -2.39 -0.02 0.99 16 38 H 0.17 3.13 7.60 -2.91 -0.02 3.10 16 39 H 0.15 4.46 7.61 -2.91 -0.02 4.43 16 40 H 0.29 15.55 8.31 -92.71 -0.77 14.78 16 41 H 0.14 4.40 7.65 -2.91 -0.02 4.38 16 42 H 0.17 3.04 7.60 -2.91 -0.02 3.02 16 43 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.09 1.10 7.13 -2.38 -0.02 1.09 16 Total: -1.00 -78.39 378.65 2.17 -76.22 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 1.01 Total: 13.87 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 4.59 Total: -24.37 kcal Atomic # 7 Polarization: -67.62 SS G_CDS: -1.39 Total: -69.01 kcal Atomic # 8 Polarization: -91.20 SS G_CDS: -3.69 Total: -94.89 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.96 Total: 43.92 kcal Atomic # 16 Polarization: 54.59 SS G_CDS: -0.32 Total: 54.26 kcal Total: -78.39 2.17 -76.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010697728.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.983 kcal (2) G-P(sol) polarization free energy of solvation -78.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds