Wall clock time and date at job start Tue Mar 31 2020 05:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38257 * 120.00354 * 2 1 4 4 C 1.38211 * 120.00296 * 179.71936 * 3 2 1 5 5 C 1.38257 * 119.99804 * 0.28153 * 4 3 2 6 6 S 1.76201 * 119.99843 * 179.97438 * 5 4 3 7 7 O 1.42106 * 104.27573 * 201.55009 * 6 5 4 8 8 O 1.42093 * 104.27806 * 329.40763 * 6 5 4 9 9 C 1.81402 * 104.45105 * 85.48356 * 6 5 4 10 10 C 1.50702 * 110.01720 * 61.94371 * 9 6 5 11 11 O 1.21203 * 120.00456 * 225.88114 * 10 9 6 12 12 O 1.34316 * 119.99442 * 45.88848 * 10 9 6 13 13 C 1.34922 * 116.99287 * 185.14125 * 12 10 9 14 14 H 1.08000 * 120.00635 * 5.04420 * 13 12 10 15 15 C 1.38761 * 119.99409 * 185.04336 * 13 12 10 16 16 N 1.31439 * 119.99699 * 185.30437 * 15 13 12 17 17 Si 1.86791 * 120.00161 * 5.31023 * 15 13 12 18 18 H 1.48505 * 109.47358 * 94.86526 * 17 15 13 19 19 H 1.48498 * 109.47092 * 214.86523 * 17 15 13 20 20 H 1.48500 * 109.47302 * 334.86477 * 17 15 13 21 21 C 1.54275 * 110.02923 * 300.50858 * 9 6 5 22 22 C 1.54881 * 104.19219 * 217.10467 * 21 9 6 23 23 C 1.54891 * 102.75130 * 37.94302 * 22 21 9 24 24 C 1.53869 * 110.03523 * 183.34038 * 9 6 5 25 25 C 1.38211 * 120.00270 * 359.97438 * 5 4 3 26 26 C 1.38222 * 120.00007 * 180.19001 * 2 1 3 27 27 C 1.50699 * 119.99944 * 0.04232 * 26 2 1 28 28 H 1.08998 * 109.46859 * 89.99968 * 1 2 3 29 29 H 1.09002 * 109.47280 * 210.00237 * 1 2 3 30 30 H 1.08998 * 109.46597 * 329.99499 * 1 2 3 31 31 H 1.08002 * 119.99794 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.99969 * 180.25745 * 4 3 2 33 33 H 0.96999 * 120.00439 * 179.97438 * 16 15 13 34 34 H 1.08996 * 110.48318 * 335.78091 * 21 9 6 35 35 H 1.08999 * 110.48596 * 98.42332 * 21 9 6 36 36 H 1.09000 * 110.75854 * 279.62727 * 22 21 9 37 37 H 1.09005 * 110.75658 * 156.25587 * 22 21 9 38 38 H 1.09003 * 110.48521 * 203.37507 * 23 22 21 39 39 H 1.09001 * 110.48741 * 80.73450 * 23 22 21 40 40 H 1.08997 * 110.03487 * 238.56701 * 24 9 6 41 41 H 1.09008 * 110.02984 * 359.97438 * 24 9 6 42 42 H 1.07995 * 120.00666 * 179.97438 * 25 5 4 43 43 H 1.08995 * 109.47297 * 275.81742 * 27 26 2 44 44 H 1.09007 * 109.46865 * 35.81140 * 27 26 2 45 45 H 1.08994 * 109.47096 * 155.81232 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 0.0059 5 6 4.2717 -0.0001 0.0058 6 16 6.0337 -0.0001 0.0126 7 8 6.3861 -1.2799 -0.4947 8 8 6.3869 1.1868 -0.6842 9 6 6.4797 0.1343 1.7658 10 6 5.9605 -1.0607 2.5232 11 8 5.3902 -0.9065 3.5815 12 8 6.1301 -2.2966 2.0255 13 6 5.5498 -3.3124 2.6976 14 1 4.9134 -3.1054 3.5453 15 6 5.7708 -4.6233 2.2998 16 7 5.1250 -5.6060 2.8870 17 14 6.9861 -4.9913 0.9298 18 1 8.3105 -5.3173 1.5173 19 1 6.4997 -6.1468 0.1339 20 1 7.1143 -3.8025 0.0492 21 6 5.8967 1.4326 2.3613 22 6 6.9881 1.9228 3.3448 23 6 8.3007 1.5828 2.5961 24 6 8.0081 0.2298 1.9152 25 6 3.5807 -1.1970 0.0005 26 6 2.1981 -1.1970 -0.0040 27 6 1.4446 -2.5021 -0.0093 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3632 0.8899 0.5139 31 1 1.6584 2.1326 0.0004 32 1 4.1205 2.1326 0.0101 33 1 5.2791 -6.5224 2.6087 34 1 5.7305 2.1710 1.5770 35 1 4.9686 1.2249 2.8939 36 1 6.9299 1.3801 4.2883 37 1 6.9049 2.9971 3.5101 38 1 9.1271 1.4847 3.3001 39 1 8.5227 2.3454 1.8497 40 1 8.3744 -0.5877 2.5362 41 1 8.4820 0.1949 0.9341 42 1 4.1206 -2.1323 0.0001 43 1 1.1721 -2.7685 1.0119 44 1 0.5416 -2.3978 -0.6108 45 1 2.0751 -3.2839 -0.4328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000010938310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:17 Heat of formation + Delta-G solvation = -128.107596 kcal Electronic energy + Delta-G solvation = -31368.883464 eV Core-core repulsion = 27250.933833 eV Total energy + Delta-G solvation = -4117.949630 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 352.122 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -39.89590 -39.44750 -37.70442 -36.73582 -35.71812 -35.23371 -33.50630 -32.39350 -32.10611 -29.79019 -28.91701 -27.71476 -26.47966 -25.62021 -22.32186 -22.21912 -21.36944 -20.73241 -19.95227 -18.50822 -18.06082 -17.79664 -16.98533 -16.25735 -15.95737 -15.49000 -15.18724 -14.85051 -14.69374 -14.56046 -14.25702 -14.07234 -13.99340 -13.35316 -13.16008 -13.04517 -12.75558 -12.52740 -12.48461 -12.25558 -12.14564 -12.02444 -11.87793 -11.80619 -11.73835 -11.66193 -11.38212 -11.27804 -11.21995 -11.03028 -10.96002 -10.65464 -10.59061 -10.45061 -10.28329 -10.09042 -9.74188 -9.25215 -8.93913 -8.70988 -8.59555 -6.43670 -4.20516 0.17514 0.97961 1.46003 2.82698 3.16505 3.26238 3.35327 3.49357 3.58796 3.65769 4.00279 4.15813 4.32563 4.45029 4.57614 4.77329 4.83863 4.96215 4.98318 5.06494 5.19085 5.24343 5.28063 5.37347 5.42112 5.43954 5.48067 5.65115 5.67065 5.72052 5.75702 5.83459 5.88372 5.89597 5.93302 6.06322 6.10016 6.15517 6.25679 6.27751 6.30857 6.34811 6.40517 6.62169 7.01769 7.57747 7.95257 8.45023 8.93542 9.52884 10.62474 Molecular weight = 352.12amu Principal moments of inertia in cm(-1) A = 0.008113 B = 0.007023 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3450.565514 B = 3986.020061 C = 5928.464485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.036 4.036 3 C -0.144 4.144 4 C -0.027 4.027 5 C -0.658 4.658 6 S 2.496 3.504 7 O -0.904 6.904 8 O -0.937 6.937 9 C -0.524 4.524 10 C 0.422 3.578 11 O -0.512 6.512 12 O -0.229 6.229 13 C -0.381 4.381 14 H 0.111 0.889 15 C 0.077 3.923 16 N -0.866 5.866 17 Si 0.866 3.134 18 H -0.274 1.274 19 H -0.279 1.279 20 H -0.220 1.220 21 C -0.094 4.094 22 C -0.113 4.113 23 C -0.123 4.123 24 C -0.092 4.092 25 C 0.000 4.000 26 C -0.103 4.103 27 C -0.116 4.116 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.129 0.871 32 H 0.135 0.865 33 H 0.281 0.719 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.151 0.849 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.343 13.896 -5.575 15.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.037 4.037 3 C -0.163 4.163 4 C -0.046 4.046 5 C -0.745 4.745 6 S 2.675 3.325 7 O -0.901 6.901 8 O -0.935 6.935 9 C -0.614 4.614 10 C 0.265 3.735 11 O -0.406 6.406 12 O -0.137 6.137 13 C -0.456 4.456 14 H 0.129 0.871 15 C -0.129 4.129 16 N -0.504 5.504 17 Si 0.689 3.311 18 H -0.200 1.200 19 H -0.205 1.205 20 H -0.142 1.142 21 C -0.132 4.132 22 C -0.151 4.151 23 C -0.161 4.161 24 C -0.131 4.131 25 C -0.018 4.018 26 C -0.104 4.104 27 C -0.173 4.173 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.147 0.853 32 H 0.153 0.847 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.091 0.909 42 H 0.168 0.832 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.982 13.626 -6.012 15.189 hybrid contribution -0.041 -0.459 0.238 0.518 sum -3.023 13.167 -5.774 14.692 Atomic orbital electron populations 1.20928 0.90914 1.03379 1.02581 1.20073 0.96179 0.92817 0.94582 1.21021 0.93964 0.97615 1.03677 1.20803 0.94739 0.96083 0.93007 1.30352 1.25363 0.99669 1.19165 1.05764 0.75001 0.75065 0.76620 1.93653 1.81750 1.39548 1.75165 1.93530 1.82777 1.49018 1.68137 1.30272 1.06262 1.01557 1.23302 1.21217 0.82352 0.83795 0.86096 1.90576 1.42114 1.85634 1.22280 1.83691 1.64833 1.14102 1.51098 1.20642 1.27173 0.82684 1.15114 0.87114 1.24481 0.96950 0.93715 0.97712 1.69600 1.39791 1.00024 1.40966 0.86698 0.80825 0.80717 0.82844 1.19956 1.20493 1.14206 1.22256 1.01002 0.90384 0.99592 1.22422 0.93068 1.00828 0.98810 1.22422 0.98492 0.95565 0.99595 1.21938 0.87662 1.01000 1.02494 1.21063 0.94132 0.97300 0.89342 1.19914 0.93625 0.95383 1.01428 1.20843 0.99690 0.93771 1.02991 0.90657 0.90699 0.91216 0.85335 0.84679 0.90884 0.90030 0.88187 0.90220 0.90744 0.90486 0.90596 0.88585 0.90910 0.83185 0.90412 0.91523 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 9.22 36.01 0.33 -0.86 16 2 C -0.04 -0.49 5.88 -104.62 -0.62 -1.11 16 3 C -0.14 -1.88 9.70 -39.58 -0.38 -2.27 16 4 C -0.03 -0.41 8.92 -39.58 -0.35 -0.76 16 5 C -0.66 -11.68 5.09 -39.58 -0.20 -11.88 16 6 S 2.50 46.42 3.79 -107.50 -0.41 46.02 16 7 O -0.90 -19.76 15.63 -64.38 -1.01 -20.77 16 8 O -0.94 -16.93 16.79 -57.54 -0.97 -17.89 16 9 C -0.52 -9.41 0.82 -90.65 -0.07 -9.49 16 10 C 0.42 9.63 6.09 36.01 0.22 9.85 16 11 O -0.51 -12.80 14.83 -19.05 -0.28 -13.08 16 12 O -0.23 -5.89 7.24 -26.36 -0.19 -6.08 16 13 C -0.38 -10.87 10.08 30.93 0.31 -10.56 16 14 H 0.11 3.45 7.13 -52.49 -0.37 3.08 16 15 C 0.08 2.16 5.49 -17.53 -0.10 2.06 16 16 N -0.87 -24.85 13.96 55.48 0.77 -24.07 16 17 Si 0.87 21.19 28.62 -169.99 -4.87 16.32 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.22 -5.47 6.94 56.52 0.39 -5.08 16 21 C -0.09 -1.40 4.96 -25.07 -0.12 -1.52 16 22 C -0.11 -1.45 6.91 -24.74 -0.17 -1.62 16 23 C -0.12 -1.49 6.83 -25.07 -0.17 -1.66 16 24 C -0.09 -1.43 6.13 -25.62 -0.16 -1.58 16 25 C 0.00 0.01 9.11 -39.58 -0.36 -0.35 16 26 C -0.10 -1.65 5.88 -104.62 -0.62 -2.26 16 27 C -0.12 -1.63 9.03 36.00 0.32 -1.30 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.71 6.82 -51.93 -0.35 0.35 16 30 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 31 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 32 H 0.14 1.66 7.15 -52.49 -0.38 1.28 16 33 H 0.28 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.08 1.00 6.71 -51.93 -0.35 0.65 16 35 H 0.10 1.59 7.06 -51.93 -0.37 1.22 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.10 1.54 7.67 -51.93 -0.40 1.15 16 41 H 0.07 1.00 7.60 -51.92 -0.39 0.61 16 42 H 0.15 3.09 7.46 -52.49 -0.39 2.70 16 43 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.07 0.73 7.04 -51.93 -0.37 0.37 16 45 H 0.07 1.07 8.05 -51.93 -0.42 0.65 16 LS Contribution 378.14 15.07 5.70 5.70 Total: -1.00 -34.10 378.14 -9.69 -43.79 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.31 Total: 5.37 kcal Atomic # 6 Polarization: -33.17 SS G_CDS: -2.14 Total: -35.31 kcal Atomic # 7 Polarization: -24.85 SS G_CDS: 0.77 Total: -24.07 kcal Atomic # 8 Polarization: -55.38 SS G_CDS: -2.45 Total: -57.83 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.87 Total: 16.32 kcal Atomic # 16 Polarization: 46.42 SS G_CDS: -0.41 Total: 46.02 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.10 -9.69 -43.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010938310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.314 kcal (2) G-P(sol) polarization free energy of solvation -34.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds