Wall clock time and date at job start Tue Mar 31 2020 05:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38257 * 120.00354 * 2 1 4 4 C 1.38211 * 120.00296 * 179.71936 * 3 2 1 5 5 C 1.38257 * 119.99804 * 0.28153 * 4 3 2 6 6 S 1.76201 * 119.99843 * 179.97438 * 5 4 3 7 7 O 1.42106 * 104.27573 * 201.55009 * 6 5 4 8 8 O 1.42093 * 104.27806 * 329.40763 * 6 5 4 9 9 C 1.81402 * 104.45105 * 85.48356 * 6 5 4 10 10 C 1.50702 * 110.01720 * 61.94371 * 9 6 5 11 11 O 1.21203 * 120.00456 * 225.88114 * 10 9 6 12 12 O 1.34316 * 119.99442 * 45.88848 * 10 9 6 13 13 C 1.34922 * 116.99287 * 185.14125 * 12 10 9 14 14 H 1.08000 * 120.00635 * 5.04420 * 13 12 10 15 15 C 1.38761 * 119.99409 * 185.04336 * 13 12 10 16 16 N 1.31439 * 119.99699 * 185.30437 * 15 13 12 17 17 Si 1.86791 * 120.00161 * 5.31023 * 15 13 12 18 18 H 1.48505 * 109.47358 * 94.86526 * 17 15 13 19 19 H 1.48498 * 109.47092 * 214.86523 * 17 15 13 20 20 H 1.48500 * 109.47302 * 334.86477 * 17 15 13 21 21 C 1.54275 * 110.02923 * 300.50858 * 9 6 5 22 22 C 1.54881 * 104.19219 * 217.10467 * 21 9 6 23 23 C 1.54891 * 102.75130 * 37.94302 * 22 21 9 24 24 C 1.53869 * 110.03523 * 183.34038 * 9 6 5 25 25 C 1.38211 * 120.00270 * 359.97438 * 5 4 3 26 26 C 1.38222 * 120.00007 * 180.19001 * 2 1 3 27 27 C 1.50699 * 119.99944 * 0.04232 * 26 2 1 28 28 H 1.08998 * 109.46859 * 89.99968 * 1 2 3 29 29 H 1.09002 * 109.47280 * 210.00237 * 1 2 3 30 30 H 1.08998 * 109.46597 * 329.99499 * 1 2 3 31 31 H 1.08002 * 119.99794 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.99969 * 180.25745 * 4 3 2 33 33 H 0.96999 * 120.00439 * 179.97438 * 16 15 13 34 34 H 1.08996 * 110.48318 * 335.78091 * 21 9 6 35 35 H 1.08999 * 110.48596 * 98.42332 * 21 9 6 36 36 H 1.09000 * 110.75854 * 279.62727 * 22 21 9 37 37 H 1.09005 * 110.75658 * 156.25587 * 22 21 9 38 38 H 1.09003 * 110.48521 * 203.37507 * 23 22 21 39 39 H 1.09001 * 110.48741 * 80.73450 * 23 22 21 40 40 H 1.08997 * 110.03487 * 238.56701 * 24 9 6 41 41 H 1.09008 * 110.02984 * 359.97438 * 24 9 6 42 42 H 1.07995 * 120.00666 * 179.97438 * 25 5 4 43 43 H 1.08995 * 109.47297 * 275.81742 * 27 26 2 44 44 H 1.09007 * 109.46865 * 35.81140 * 27 26 2 45 45 H 1.08994 * 109.47096 * 155.81232 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 0.0059 5 6 4.2717 -0.0001 0.0058 6 16 6.0337 -0.0001 0.0126 7 8 6.3861 -1.2799 -0.4947 8 8 6.3869 1.1868 -0.6842 9 6 6.4797 0.1343 1.7658 10 6 5.9605 -1.0607 2.5232 11 8 5.3902 -0.9065 3.5815 12 8 6.1301 -2.2966 2.0255 13 6 5.5498 -3.3124 2.6976 14 1 4.9134 -3.1054 3.5453 15 6 5.7708 -4.6233 2.2998 16 7 5.1250 -5.6060 2.8870 17 14 6.9861 -4.9913 0.9298 18 1 8.3105 -5.3173 1.5173 19 1 6.4997 -6.1468 0.1339 20 1 7.1143 -3.8025 0.0492 21 6 5.8967 1.4326 2.3613 22 6 6.9881 1.9228 3.3448 23 6 8.3007 1.5828 2.5961 24 6 8.0081 0.2298 1.9152 25 6 3.5807 -1.1970 0.0005 26 6 2.1981 -1.1970 -0.0040 27 6 1.4446 -2.5021 -0.0093 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3632 0.8899 0.5139 31 1 1.6584 2.1326 0.0004 32 1 4.1205 2.1326 0.0101 33 1 5.2791 -6.5224 2.6087 34 1 5.7305 2.1710 1.5770 35 1 4.9686 1.2249 2.8939 36 1 6.9299 1.3801 4.2883 37 1 6.9049 2.9971 3.5101 38 1 9.1271 1.4847 3.3001 39 1 8.5227 2.3454 1.8497 40 1 8.3744 -0.5877 2.5362 41 1 8.4820 0.1949 0.9341 42 1 4.1206 -2.1323 0.0001 43 1 1.1721 -2.7685 1.0119 44 1 0.5416 -2.3978 -0.6108 45 1 2.0751 -3.2839 -0.4328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000010938310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:16 Heat of formation + Delta-G solvation = -149.276290 kcal Electronic energy + Delta-G solvation = -31369.801407 eV Core-core repulsion = 27250.933833 eV Total energy + Delta-G solvation = -4118.867574 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 352.122 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.68983 -40.61412 -39.17014 -38.24966 -37.28684 -37.12412 -34.62449 -34.56472 -33.22874 -31.13383 -30.06570 -28.75749 -27.67463 -27.57970 -23.90926 -23.38831 -22.59501 -21.81257 -21.44681 -20.25041 -20.10205 -19.30130 -18.39316 -17.68184 -17.49702 -17.07465 -16.51230 -16.36948 -16.17746 -16.05727 -15.81005 -15.28269 -15.18632 -14.78800 -14.58242 -14.40420 -14.25087 -14.00497 -13.67297 -13.55179 -13.44126 -13.37943 -13.26756 -13.15682 -13.11692 -13.02373 -12.84529 -12.63832 -12.51288 -12.37473 -12.24589 -12.09806 -12.06472 -11.87974 -11.86989 -11.56797 -11.53208 -11.08995 -10.86738 -10.07708 -9.79381 -8.61342 -6.45634 -1.26389 -0.23756 0.26473 1.09041 1.27474 1.35184 1.59182 1.67126 1.87134 2.25197 2.30201 2.65197 2.77762 2.86378 3.16287 3.26984 3.69180 3.80046 3.83123 3.88017 4.08310 4.11846 4.18791 4.23270 4.25048 4.33491 4.42352 4.53790 4.62660 4.66548 4.67028 4.74210 4.80377 4.86037 4.88377 4.93838 5.03988 5.09685 5.12234 5.12862 5.17979 5.24588 5.37189 5.40756 5.49155 5.81250 5.89042 6.36283 6.75615 7.43860 8.49710 Molecular weight = 352.12amu Principal moments of inertia in cm(-1) A = 0.008113 B = 0.007023 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3450.565514 B = 3986.020061 C = 5928.464485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.032 4.032 3 C -0.137 4.137 4 C -0.031 4.031 5 C -0.676 4.676 6 S 2.502 3.498 7 O -0.947 6.947 8 O -0.929 6.929 9 C -0.522 4.522 10 C 0.432 3.568 11 O -0.537 6.537 12 O -0.241 6.241 13 C -0.397 4.397 14 H 0.069 0.931 15 C 0.039 3.961 16 N -0.902 5.902 17 Si 0.923 3.077 18 H -0.259 1.259 19 H -0.263 1.263 20 H -0.232 1.232 21 C -0.098 4.098 22 C -0.112 4.112 23 C -0.116 4.116 24 C -0.107 4.107 25 C -0.038 4.038 26 C -0.122 4.122 27 C -0.116 4.116 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.175 0.825 32 H 0.165 0.835 33 H 0.289 0.711 34 H 0.116 0.884 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.112 0.888 43 H 0.068 0.932 44 H 0.101 0.899 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.766 17.629 -6.812 19.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.032 4.032 3 C -0.155 4.155 4 C -0.050 4.050 5 C -0.766 4.766 6 S 2.684 3.316 7 O -0.945 6.945 8 O -0.926 6.926 9 C -0.612 4.612 10 C 0.276 3.724 11 O -0.431 6.431 12 O -0.150 6.150 13 C -0.472 4.472 14 H 0.087 0.913 15 C -0.163 4.163 16 N -0.541 5.541 17 Si 0.743 3.257 18 H -0.183 1.183 19 H -0.187 1.187 20 H -0.155 1.155 21 C -0.136 4.136 22 C -0.150 4.150 23 C -0.153 4.153 24 C -0.146 4.146 25 C -0.057 4.057 26 C -0.123 4.123 27 C -0.172 4.172 28 H 0.116 0.884 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.193 0.807 32 H 0.183 0.817 33 H 0.100 0.900 34 H 0.134 0.866 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.132 0.868 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.130 0.870 43 H 0.087 0.913 44 H 0.120 0.880 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.386 17.348 -7.235 19.099 hybrid contribution -0.047 -1.451 0.675 1.601 sum -3.433 15.897 -6.560 17.536 Atomic orbital electron populations 1.21052 0.87699 1.04667 1.04299 1.20591 0.98475 0.91901 0.92231 1.21590 0.93427 0.99209 1.01294 1.21268 0.95949 0.95812 0.91974 1.30161 1.24462 1.00617 1.21350 1.05318 0.75473 0.74294 0.76524 1.93601 1.82917 1.41615 1.76324 1.93523 1.83143 1.48086 1.67884 1.30476 1.08318 1.00181 1.22213 1.22236 0.80209 0.84139 0.85837 1.90555 1.42690 1.86162 1.23734 1.83715 1.65321 1.14767 1.51158 1.20274 1.28129 0.84156 1.14654 0.91296 1.25160 0.98282 0.93227 0.99678 1.69658 1.41139 1.00701 1.42603 0.85870 0.79305 0.80449 0.80083 1.18316 1.18685 1.15475 1.22479 1.00930 0.89265 1.00944 1.22480 0.92501 1.02875 0.97158 1.22507 0.98681 0.93786 1.00320 1.22218 0.85587 1.03037 1.03771 1.20929 0.95610 0.96492 0.92676 1.20195 0.92815 0.97372 1.01958 1.20869 1.00623 0.92755 1.02958 0.88443 0.90629 0.88816 0.80742 0.81748 0.90043 0.86607 0.89746 0.92501 0.86792 0.88577 0.87704 0.90115 0.89275 0.87008 0.91304 0.87994 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.91 9.22 71.24 0.66 -1.25 16 2 C -0.03 -0.79 5.88 -19.86 -0.12 -0.91 16 3 C -0.14 -3.08 9.70 22.27 0.22 -2.87 16 4 C -0.03 -0.85 8.92 22.27 0.20 -0.65 16 5 C -0.68 -24.20 5.09 22.27 0.11 -24.09 16 6 S 2.50 93.47 3.79 -56.49 -0.21 93.25 16 7 O -0.95 -43.39 15.63 -121.11 -1.89 -45.29 16 8 O -0.93 -31.81 16.79 -127.65 -2.14 -33.95 16 9 C -0.52 -18.73 0.82 -10.81 -0.01 -18.74 16 10 C 0.43 20.69 6.09 71.24 0.43 21.12 16 11 O -0.54 -28.39 14.83 20.80 0.31 -28.08 16 12 O -0.24 -13.18 7.24 20.19 0.15 -13.04 16 13 C -0.40 -24.30 10.08 67.95 0.68 -23.61 16 14 H 0.07 4.69 7.13 -2.91 -0.02 4.67 16 15 C 0.04 2.29 5.49 84.88 0.47 2.76 16 16 N -0.90 -54.26 13.96 21.63 0.30 -53.96 16 17 Si 0.92 45.54 28.62 68.60 1.96 47.50 16 18 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 19 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.23 -11.85 6.94 99.48 0.69 -11.16 16 21 C -0.10 -2.73 4.96 31.67 0.16 -2.57 16 22 C -0.11 -2.56 6.91 31.88 0.22 -2.34 16 23 C -0.12 -2.42 6.83 31.67 0.22 -2.21 16 24 C -0.11 -3.22 6.13 31.32 0.19 -3.03 16 25 C -0.04 -1.51 9.11 22.27 0.20 -1.30 16 26 C -0.12 -4.01 5.88 -19.86 -0.12 -4.13 16 27 C -0.12 -3.37 9.03 71.24 0.64 -2.72 16 28 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 1.22 6.82 -2.39 -0.02 1.20 16 30 H 0.09 1.08 8.09 -2.39 -0.02 1.06 16 31 H 0.18 2.32 8.06 -2.91 -0.02 2.30 16 32 H 0.17 3.36 7.15 -2.91 -0.02 3.34 16 33 H 0.29 15.84 8.31 -92.71 -0.77 15.07 16 34 H 0.12 2.41 6.71 -2.39 -0.02 2.39 16 35 H 0.08 2.63 7.06 -2.39 -0.02 2.61 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.08 2.64 7.67 -2.39 -0.02 2.62 16 41 H 0.09 2.35 7.60 -2.38 -0.02 2.34 16 42 H 0.11 5.18 7.46 -2.91 -0.02 5.16 16 43 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.10 2.15 7.04 -2.38 -0.02 2.13 16 45 H 0.06 1.78 8.05 -2.39 -0.02 1.76 16 Total: -1.00 -81.16 378.14 3.62 -77.54 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.99 Total: 22.57 kcal Atomic # 6 Polarization: -70.70 SS G_CDS: 4.16 Total: -66.55 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.30 Total: -53.96 kcal Atomic # 8 Polarization: -116.78 SS G_CDS: -3.58 Total: -120.36 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.96 Total: 47.50 kcal Atomic # 16 Polarization: 93.47 SS G_CDS: -0.21 Total: 93.25 kcal Total: -81.16 3.62 -77.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010938310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.734 kcal (2) G-P(sol) polarization free energy of solvation -81.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds