Wall clock time and date at job start Tue Mar 31 2020 05:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35940 * 116.99967 * 2 1 4 4 C 1.38756 * 119.98395 * 180.02562 * 3 2 1 5 5 C 1.38054 * 120.01233 * 180.02562 * 4 3 2 6 6 C 1.38866 * 119.98947 * 359.97438 * 5 4 3 7 7 N 1.40169 * 120.01563 * 179.97438 * 6 5 4 8 8 C 1.36065 * 119.71297 * 271.63134 * 7 6 5 9 9 C 1.50702 * 118.32642 * 359.97438 * 8 7 6 10 10 N 1.29845 * 123.34716 * 179.97438 * 8 7 6 11 11 C 1.35624 * 121.64011 * 359.97438 * 10 8 7 12 12 C 1.39734 * 121.57209 * 180.02562 * 11 10 8 13 13 C 1.36523 * 119.89899 * 180.23047 * 12 11 10 14 14 C 1.39483 * 120.89999 * 359.49153 * 13 12 11 15 15 O 1.35749 * 119.79106 * 180.26156 * 14 13 12 16 16 C 1.34820 * 116.99605 * 179.27025 * 15 14 13 17 17 H 1.07997 * 119.99826 * 5.31971 * 16 15 14 18 18 C 1.38629 * 120.00116 * 185.31829 * 16 15 14 19 19 N 1.31574 * 120.00018 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00047 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47059 * 90.00358 * 20 18 16 22 22 H 1.48507 * 109.46703 * 210.00162 * 20 18 16 23 23 H 1.48498 * 109.46994 * 329.99729 * 20 18 16 24 24 C 1.38468 * 120.40820 * 0.50960 * 14 13 12 25 25 C 1.39258 * 119.32597 * 359.75186 * 24 14 13 26 26 C 1.35341 * 119.71838 * 91.60891 * 7 6 5 27 27 O 1.21741 * 121.29359 * 0.04541 * 26 7 6 28 28 C 1.38862 * 119.96943 * 0.25654 * 6 5 4 29 29 C 1.38068 * 119.98317 * 359.48880 * 28 6 5 30 30 H 1.09003 * 109.47062 * 299.99561 * 1 2 3 31 31 H 1.09003 * 109.47114 * 59.99651 * 1 2 3 32 32 H 1.09003 * 109.47364 * 179.97438 * 1 2 3 33 33 H 1.07999 * 119.99124 * 359.97438 * 4 3 2 34 34 H 1.08002 * 120.00786 * 180.02562 * 5 4 3 35 35 H 1.08996 * 109.47063 * 84.79299 * 9 8 7 36 36 H 1.08998 * 109.46843 * 204.79513 * 9 8 7 37 37 H 1.09001 * 109.47131 * 324.79792 * 9 8 7 38 38 H 1.07999 * 120.04978 * 359.95136 * 12 11 10 39 39 H 1.08007 * 119.54733 * 179.72331 * 13 12 11 40 40 H 0.96994 * 120.00060 * 179.97438 * 19 18 16 41 41 H 1.08004 * 120.33671 * 179.72671 * 24 14 13 42 42 H 1.07992 * 120.00600 * 179.74985 * 28 6 5 43 43 H 1.08003 * 119.98735 * 180.25936 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 3.4318 1.2835 -0.0005 5 6 4.0591 2.5132 0.0000 6 6 3.3032 3.6781 0.0005 7 7 3.9396 4.9270 0.0016 8 6 4.2753 5.5118 1.1834 9 6 3.9446 4.7839 2.4609 10 7 4.8662 6.6650 1.2667 11 6 5.1950 7.3775 0.1605 12 6 5.8313 8.6182 0.2517 13 6 6.1426 9.3085 -0.8842 14 6 5.8436 8.7881 -2.1433 15 8 6.1680 9.4913 -3.2582 16 6 5.8669 8.9287 -4.4458 17 1 5.3129 8.0023 -4.4795 18 6 6.2685 9.5394 -5.6238 19 7 6.9440 10.6678 -5.5828 20 14 5.8507 8.7603 -7.2694 21 1 4.5397 9.2737 -7.7415 22 1 6.9024 9.1027 -8.2603 23 1 5.7780 7.2852 -7.1144 24 6 5.2134 7.5609 -2.2629 25 6 4.8851 6.8479 -1.1126 26 6 4.2152 5.5406 -1.1728 27 8 3.9203 5.0296 -2.2377 28 6 1.9165 3.6051 0.0059 29 6 1.2903 2.3746 0.0001 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 4.0196 0.3775 -0.0005 34 1 5.1377 2.5694 -0.0008 35 1 4.7390 4.0738 2.6905 36 1 3.8530 5.5026 3.2752 37 1 3.0026 4.2488 2.3407 38 1 6.0724 9.0324 1.2195 39 1 6.6303 10.2691 -0.8070 40 1 7.2253 11.0949 -6.4070 41 1 4.9785 7.1610 -3.2383 42 1 1.3280 4.5106 0.0104 43 1 0.2117 2.3178 0.0000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012391313.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:37 Heat of formation + Delta-G solvation = -7.549654 kcal Electronic energy + Delta-G solvation = -29929.835345 eV Core-core repulsion = 25713.962299 eV Total energy + Delta-G solvation = -4215.873046 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.126 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.64570 -40.24448 -39.01584 -37.72177 -37.49632 -36.13075 -33.55914 -32.38229 -31.49115 -31.14401 -30.44149 -29.40823 -27.56422 -27.22379 -25.49919 -24.24984 -23.04400 -22.57941 -21.89231 -21.46713 -18.87721 -18.59382 -18.30560 -18.13265 -16.89990 -16.82643 -16.43404 -16.08678 -15.42045 -15.04283 -14.77907 -14.58421 -14.35760 -14.10996 -13.85265 -13.71226 -13.68325 -13.58761 -13.33496 -13.23423 -13.05200 -12.75177 -12.48656 -12.36428 -12.21598 -12.06289 -11.74771 -11.46842 -11.44322 -11.24015 -11.16721 -10.77879 -10.51448 -10.01852 -9.84714 -9.46487 -9.35903 -9.34566 -8.81344 -8.56966 -8.46321 -6.99042 -6.61686 -4.15760 0.94101 1.00828 1.11429 1.42912 2.61781 2.69811 2.90968 3.05918 3.10189 3.15712 3.32739 3.34579 3.87289 4.25778 4.42969 4.49791 4.54345 4.71595 4.73821 4.77545 4.77951 4.93751 4.94971 5.04419 5.07818 5.13763 5.26171 5.39983 5.42077 5.47188 5.57534 5.66366 5.81626 5.87437 5.94604 5.95870 6.16353 6.17351 6.27948 6.46211 6.59264 6.68626 6.84962 6.89948 7.00746 7.08802 7.21666 7.43304 7.82850 8.09470 8.33273 8.83367 9.46357 10.54608 Molecular weight = 352.13amu Principal moments of inertia in cm(-1) A = 0.012502 B = 0.002785 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.037584 B =10050.089704 C =11911.953070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.316 6.316 3 C 0.135 3.865 4 C -0.141 4.141 5 C -0.061 4.061 6 C 0.086 3.914 7 N -0.501 5.501 8 C 0.335 3.665 9 C -0.097 4.097 10 N -0.485 5.485 11 C 0.040 3.960 12 C -0.057 4.057 13 C -0.140 4.140 14 C 0.140 3.860 15 O -0.160 6.160 16 C -0.391 4.391 17 H 0.098 0.902 18 C 0.043 3.957 19 N -0.852 5.852 20 Si 0.942 3.058 21 H -0.270 1.270 22 H -0.275 1.275 23 H -0.264 1.264 24 C -0.174 4.174 25 C -0.128 4.128 26 C 0.547 3.453 27 O -0.510 6.510 28 C -0.061 4.061 29 C -0.198 4.198 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.274 0.726 41 H 0.144 0.856 42 H 0.130 0.870 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.383 -17.102 15.027 25.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.229 6.229 3 C 0.090 3.910 4 C -0.160 4.160 5 C -0.080 4.080 6 C -0.004 4.004 7 N -0.225 5.225 8 C 0.069 3.931 9 C -0.156 4.156 10 N -0.203 5.203 11 C -0.069 4.069 12 C -0.076 4.076 13 C -0.160 4.160 14 C 0.084 3.916 15 O -0.061 6.061 16 C -0.466 4.466 17 H 0.115 0.885 18 C -0.163 4.163 19 N -0.485 5.485 20 Si 0.766 3.234 21 H -0.196 1.196 22 H -0.200 1.200 23 H -0.188 1.188 24 C -0.195 4.195 25 C -0.133 4.133 26 C 0.341 3.659 27 O -0.383 6.383 28 C -0.080 4.080 29 C -0.217 4.217 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.119 0.881 33 H 0.156 0.844 34 H 0.152 0.848 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.084 0.916 41 H 0.161 0.839 42 H 0.148 0.852 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.948 -16.619 14.741 24.341 hybrid contribution -0.642 -0.487 -1.725 1.904 sum -10.590 -17.107 13.016 23.963 Atomic orbital electron populations 1.23101 0.78148 1.04110 1.01602 1.86088 1.21600 1.26714 1.88467 1.19082 0.92332 0.84200 0.95418 1.20278 0.91339 0.98166 1.06206 1.21070 1.00318 0.90463 0.96187 1.17474 0.91276 0.84304 1.07336 1.43902 1.53553 1.17704 1.07320 1.22600 0.93723 0.90386 0.86363 1.20786 1.02477 1.00178 0.92112 1.68184 1.16519 1.05043 1.30601 1.18265 1.05233 0.96698 0.86679 1.20113 0.97321 0.92163 0.97994 1.20151 1.04755 1.01587 0.89516 1.19322 0.93676 0.90107 0.88504 1.83978 1.68956 1.41420 1.11788 1.21486 1.36092 1.08893 0.80169 0.88514 1.25356 0.95718 0.95943 0.99279 1.70039 1.33530 1.15714 1.29232 0.85670 0.78580 0.79579 0.79544 1.19578 1.20002 1.18789 1.20950 1.04557 0.95773 0.98209 1.20177 1.03720 0.94169 0.95256 1.18711 0.79053 0.85550 0.82567 1.90841 1.52554 1.66837 1.28113 1.21044 0.93024 0.97959 0.95961 1.21095 1.00286 0.91515 1.08853 0.92441 0.92417 0.88112 0.84363 0.84760 0.89709 0.88735 0.90446 0.85025 0.85102 0.91625 0.83892 0.85215 0.84725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.89 10.50 -19.55 -0.21 -3.09 16 3 C 0.14 1.37 6.69 -39.21 -0.26 1.11 16 4 C -0.14 -1.44 9.98 -39.46 -0.39 -1.84 16 5 C -0.06 -0.72 9.96 -39.42 -0.39 -1.11 16 6 C 0.09 1.15 2.90 -83.58 -0.24 0.91 16 7 N -0.50 -8.00 2.65 -58.31 -0.15 -8.16 16 8 C 0.34 4.89 7.56 -155.01 -1.17 3.72 16 9 C -0.10 -0.93 9.49 36.01 0.34 -0.59 16 10 N -0.49 -8.19 10.23 -8.11 -0.08 -8.27 16 11 C 0.04 0.77 6.63 -84.46 -0.56 0.21 16 12 C -0.06 -1.02 9.97 -39.64 -0.40 -1.42 16 13 C -0.14 -2.81 9.89 -39.74 -0.39 -3.20 16 14 C 0.14 3.32 6.66 -39.03 -0.26 3.06 16 15 O -0.16 -4.42 9.75 0.08 0.00 -4.42 16 16 C -0.39 -10.82 9.47 30.88 0.29 -10.53 16 17 H 0.10 2.57 5.18 -52.49 -0.27 2.30 16 18 C 0.04 1.17 5.49 -17.52 -0.10 1.07 16 19 N -0.85 -24.27 13.67 55.48 0.76 -23.51 16 20 Si 0.94 20.56 29.55 -169.99 -5.02 15.54 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 24 C -0.17 -4.05 8.78 -39.12 -0.34 -4.39 16 25 C -0.13 -2.71 5.89 -104.79 -0.62 -3.33 16 26 C 0.55 11.03 7.63 -12.45 -0.09 10.93 16 27 O -0.51 -11.53 16.70 5.15 0.09 -11.45 16 28 C -0.06 -0.71 9.43 -39.41 -0.37 -1.08 16 29 C -0.20 -1.92 9.03 -39.46 -0.36 -2.28 16 30 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 31 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 32 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.81 8.13 -51.93 -0.42 0.38 16 37 H 0.08 0.65 6.65 -51.93 -0.35 0.31 16 38 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 39 H 0.13 2.39 8.06 -52.48 -0.42 1.96 16 40 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.14 3.51 5.38 -52.48 -0.28 3.23 16 42 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.14 0.96 6.29 -52.48 -0.33 0.63 16 LS Contribution 371.48 15.07 5.60 5.60 Total: -1.00 -33.62 371.48 -7.89 -41.51 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -4.54 Total: 3.88 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -4.33 Total: -7.63 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.52 Total: -39.94 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.12 Total: -18.96 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.62 -7.89 -41.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012391313.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.963 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds