Wall clock time and date at job start Tue Mar 31 2020 05:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30868 * 1 3 3 Si 1.86804 * 120.00107 * 2 1 4 4 H 1.48497 * 109.47411 * 270.00330 * 3 2 1 5 5 H 1.48499 * 109.46679 * 30.00741 * 3 2 1 6 6 H 1.48503 * 109.46788 * 150.00298 * 3 2 1 7 7 C 1.39907 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00207 * 175.53785 * 7 2 1 9 9 C 1.41157 * 119.99736 * 355.54662 * 7 2 1 10 10 C 1.40868 * 120.16787 * 35.00954 * 9 7 2 11 11 C 1.36369 * 119.83187 * 180.25497 * 10 9 7 12 12 C 1.39488 * 120.16815 * 359.48081 * 11 10 9 13 13 N 1.39230 * 119.83491 * 180.29701 * 12 11 10 14 14 C 1.34776 * 120.00132 * 324.71459 * 13 12 11 15 15 O 1.21273 * 120.00148 * 4.28751 * 14 13 12 16 16 C 1.50701 * 119.99729 * 184.29391 * 14 13 12 17 17 C 1.53005 * 109.46866 * 179.97438 * 16 14 13 18 18 N 1.46499 * 109.47078 * 179.97438 * 17 16 14 19 19 C 1.34776 * 119.99942 * 180.02562 * 18 17 16 20 20 O 1.21273 * 120.00148 * 359.97438 * 19 18 17 21 21 C 1.50701 * 119.99729 * 180.02562 * 19 18 17 22 22 C 1.50702 * 109.46994 * 179.97438 * 21 19 18 23 23 C 1.38231 * 120.00265 * 269.72731 * 22 21 19 24 24 C 1.38235 * 120.00561 * 179.76756 * 23 22 21 25 25 C 1.38236 * 119.99610 * 0.50203 * 24 23 22 26 26 C 1.38241 * 120.00054 * 359.74890 * 25 24 23 27 27 C 1.38236 * 120.00041 * 89.99691 * 22 21 19 28 28 C 1.39488 * 120.32809 * 0.27674 * 12 11 10 29 29 C 1.36371 * 120.16911 * 359.97438 * 28 12 11 30 30 H 0.96996 * 120.00226 * 359.97438 * 1 2 3 31 31 H 1.08002 * 120.08329 * 0.03565 * 10 9 7 32 32 H 1.07997 * 119.92197 * 179.75997 * 11 10 9 33 33 H 0.97004 * 119.99646 * 144.70941 * 13 12 11 34 34 H 1.09006 * 109.47134 * 299.99312 * 16 14 13 35 35 H 1.08996 * 109.47699 * 59.99690 * 16 14 13 36 36 H 1.09006 * 109.46747 * 299.99628 * 17 16 14 37 37 H 1.08996 * 109.47151 * 59.99433 * 17 16 14 38 38 H 0.97002 * 120.00155 * 359.97438 * 18 17 16 39 39 H 1.09006 * 109.47134 * 299.99312 * 21 19 18 40 40 H 1.08996 * 109.47699 * 59.99690 * 21 19 18 41 41 H 1.08005 * 119.99739 * 359.97438 * 23 22 21 42 42 H 1.08001 * 120.00362 * 180.22988 * 24 23 22 43 43 H 1.07999 * 120.00154 * 179.72856 * 25 24 23 44 44 H 1.07994 * 120.00022 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.00261 * 359.97438 * 27 22 21 46 46 H 1.07996 * 119.91077 * 180.02562 * 28 12 11 47 47 H 1.08006 * 120.08225 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4902 2.0465 -1.4000 5 1 1.4402 2.6526 0.7002 6 1 3.5403 1.4401 0.7000 7 6 2.0083 -1.2116 -0.0005 8 1 3.0858 -1.2130 -0.0733 9 6 1.3057 -2.4323 0.0938 10 6 0.0438 -2.5717 -0.5165 11 6 -0.6313 -3.7524 -0.4166 12 6 -0.0706 -4.8238 0.2786 13 7 -0.7632 -6.0281 0.3710 14 6 -2.1072 -6.0265 0.4718 15 8 -2.7192 -4.9817 0.4040 16 6 -2.8495 -7.3231 0.6691 17 6 -4.3515 -7.0433 0.7522 18 7 -5.0731 -8.3038 0.9433 19 6 -6.4171 -8.3023 1.0441 20 8 -7.0290 -7.2574 0.9770 21 6 -7.1594 -9.5989 1.2413 22 6 -8.6388 -9.3233 1.3230 23 6 -9.2287 -9.0733 2.5478 24 6 -10.5848 -8.8158 2.6223 25 6 -11.3529 -8.8186 1.4730 26 6 -10.7639 -9.0738 0.2486 27 6 -9.4069 -9.3262 0.1737 28 6 1.1807 -4.6949 0.8812 29 6 1.8654 -3.5188 0.7942 30 1 -0.4850 0.8400 0.0004 31 1 -0.3895 -1.7446 -1.0592 32 1 -1.6006 -3.8596 -0.8807 33 1 -0.2784 -6.8683 0.3627 34 1 -2.6493 -7.9879 -0.1713 35 1 -2.5166 -7.7955 1.5933 36 1 -4.5513 -6.3787 1.5928 37 1 -4.6846 -6.5708 -0.1718 38 1 -4.5838 -9.1397 0.9967 39 1 -6.9592 -10.2636 0.4010 40 1 -6.8266 -10.0712 2.1655 41 1 -8.6295 -9.0758 3.4464 42 1 -11.0451 -8.6168 3.5788 43 1 -12.4132 -8.6218 1.5315 44 1 -11.3641 -9.0764 -0.6492 45 1 -8.9467 -9.5254 -0.7829 46 1 1.6087 -5.5290 1.4174 47 1 2.8345 -3.4207 1.2610 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012784571.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:24 Heat of formation + Delta-G solvation = -31.917944 kcal Electronic energy + Delta-G solvation = -28209.049174 eV Core-core repulsion = 24127.952534 eV Total energy + Delta-G solvation = -4081.096640 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.31738 -39.73578 -38.88632 -37.34627 -35.31171 -34.44100 -33.22885 -32.93124 -31.18004 -31.13841 -29.50737 -28.94679 -27.85262 -25.27940 -23.68413 -22.84562 -21.94819 -21.41531 -20.94907 -20.57127 -19.50244 -17.48184 -17.29032 -17.18346 -16.76957 -16.44564 -16.21043 -15.70758 -15.59902 -15.16192 -15.02175 -14.67357 -13.98401 -13.92864 -13.72883 -13.65348 -13.56145 -13.25656 -12.95808 -12.70430 -12.63975 -12.36249 -12.10965 -11.99721 -11.78505 -11.51794 -11.46999 -11.40830 -11.26728 -11.15964 -10.92450 -10.50899 -10.14171 -9.95378 -9.88924 -9.49560 -9.25783 -9.14503 -9.02715 -8.97544 -8.76296 -7.53636 -6.90528 -6.59327 -4.33699 1.06641 1.17610 2.46060 2.54081 2.84706 2.98983 3.08492 3.11005 3.14713 3.32267 3.56179 3.80464 3.99151 4.29656 4.51607 4.53326 4.71485 4.74416 4.79415 4.85093 4.90653 4.95171 5.03909 5.07163 5.24937 5.33352 5.37458 5.65660 5.71883 5.77309 5.78355 5.93862 6.11000 6.18780 6.21309 6.26523 6.30826 6.37504 6.74539 6.76937 6.97448 7.03651 7.19108 7.25482 7.28968 7.62335 7.65572 7.96136 8.04087 8.08957 8.16283 8.32773 8.66101 8.72393 8.93176 9.00439 10.31631 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.019312 B = 0.001488 C = 0.001411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.526101 B =18811.520865 C =19843.103662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.463 4.463 8 H 0.076 0.924 9 C 0.100 3.900 10 C -0.144 4.144 11 C -0.093 4.093 12 C 0.001 3.999 13 N -0.652 5.652 14 C 0.500 3.500 15 O -0.522 6.522 16 C -0.150 4.150 17 C 0.134 3.866 18 N -0.734 5.734 19 C 0.510 3.490 20 O -0.524 6.524 21 C -0.102 4.102 22 C -0.067 4.067 23 C -0.106 4.106 24 C -0.120 4.120 25 C -0.121 4.121 26 C -0.120 4.120 27 C -0.105 4.105 28 C -0.113 4.113 29 C -0.205 4.205 30 H 0.279 0.721 31 H 0.130 0.870 32 H 0.108 0.892 33 H 0.395 0.605 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.399 0.601 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.090 0.910 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.218 -23.097 2.369 27.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.147 4.147 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.098 3.902 10 C -0.164 4.164 11 C -0.113 4.113 12 C -0.091 4.091 13 N -0.295 5.295 14 C 0.285 3.715 15 O -0.398 6.398 16 C -0.191 4.191 17 C 0.010 3.990 18 N -0.387 5.387 19 C 0.296 3.704 20 O -0.399 6.399 21 C -0.142 4.142 22 C -0.067 4.067 23 C -0.124 4.124 24 C -0.138 4.138 25 C -0.139 4.139 26 C -0.138 4.138 27 C -0.124 4.124 28 C -0.133 4.133 29 C -0.225 4.225 30 H 0.090 0.910 31 H 0.148 0.852 32 H 0.125 0.875 33 H 0.228 0.772 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.232 0.768 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.108 0.892 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.325 -21.394 2.288 26.416 hybrid contribution 0.949 -0.062 0.206 0.973 sum -14.376 -21.456 2.494 25.947 Atomic orbital electron populations 1.69782 1.07262 1.28842 1.37435 1.25902 0.94934 1.01197 0.92647 0.86201 0.80159 0.80568 0.79056 1.19514 1.20289 1.18758 1.19483 0.94656 0.90231 1.45014 0.90627 1.17736 0.92261 0.91861 0.88356 1.21310 0.96979 0.96125 1.02027 1.20648 0.98953 0.93325 0.98354 1.17282 0.95092 0.87077 1.09633 1.42965 1.06068 1.08386 1.72112 1.20238 0.82751 0.90489 0.77980 1.90764 1.67169 1.33146 1.48751 1.21780 0.95446 0.97431 1.04438 1.21051 0.88822 0.85195 1.03883 1.46017 1.06855 1.10508 1.75316 1.20520 0.82019 0.91160 0.76706 1.90781 1.67348 1.33459 1.48265 1.20683 0.92350 0.96092 1.05055 1.19263 0.93526 1.00187 0.93765 1.20989 0.95070 0.99213 0.97088 1.21113 0.94018 1.00075 0.98547 1.21157 0.99886 1.00095 0.92799 1.21112 0.94931 0.99929 0.97795 1.20986 0.94027 0.99715 0.97623 1.20067 0.94973 0.97520 1.00728 1.20688 1.01122 0.94658 1.05984 0.91013 0.85200 0.87454 0.77193 0.88583 0.88522 0.90369 0.90397 0.76773 0.87888 0.87889 0.86234 0.86068 0.86177 0.86072 0.86239 0.89173 0.88531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.74 10.61 55.55 0.59 -21.15 16 2 C 0.07 1.77 5.42 -17.34 -0.09 1.68 16 3 Si 0.92 19.23 29.56 -169.99 -5.03 14.21 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.46 -12.39 9.02 -37.85 -0.34 -12.73 16 8 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 9 C 0.10 2.69 5.55 -106.80 -0.59 2.10 16 10 C -0.14 -3.89 8.61 -39.26 -0.34 -4.23 16 11 C -0.09 -2.31 8.61 -39.79 -0.34 -2.65 16 12 C 0.00 0.03 6.31 -83.57 -0.53 -0.50 16 13 N -0.65 -10.69 5.30 -9.74 -0.05 -10.74 16 14 C 0.50 8.14 7.66 -10.99 -0.08 8.06 16 15 O -0.52 -11.28 13.40 5.56 0.07 -11.20 16 16 C -0.15 -1.48 5.82 -27.88 -0.16 -1.65 16 17 C 0.13 1.60 4.96 -4.04 -0.02 1.58 16 18 N -0.73 -6.28 5.56 -60.29 -0.33 -6.61 16 19 C 0.51 5.45 7.82 -10.99 -0.09 5.37 16 20 O -0.52 -8.41 16.03 5.56 0.09 -8.32 16 21 C -0.10 -0.69 5.83 -29.03 -0.17 -0.86 16 22 C -0.07 -0.62 4.37 -104.62 -0.46 -1.07 16 23 C -0.11 -0.97 9.70 -39.58 -0.38 -1.35 16 24 C -0.12 -1.04 10.05 -39.58 -0.40 -1.43 16 25 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 26 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 27 C -0.11 -0.96 9.70 -39.58 -0.38 -1.35 16 28 C -0.11 -2.42 9.90 -39.79 -0.39 -2.81 16 29 C -0.20 -4.91 9.74 -39.26 -0.38 -5.29 16 30 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 31 H 0.13 3.68 6.15 -52.49 -0.32 3.35 16 32 H 0.11 2.69 6.22 -52.49 -0.33 2.36 16 33 H 0.39 4.73 8.82 -40.82 -0.36 4.37 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 37 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 38 H 0.40 1.82 8.47 -40.82 -0.35 1.47 16 39 H 0.10 0.44 8.09 -51.93 -0.42 0.02 16 40 H 0.10 0.45 8.08 -51.93 -0.42 0.03 16 41 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 45 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 46 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 47 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16 LS Contribution 401.82 15.07 6.06 6.06 Total: -1.00 -35.75 401.82 -10.94 -46.69 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -6.39 Total: 11.07 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -5.95 Total: -19.99 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.20 Total: -38.51 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: 0.16 Total: -19.52 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.75 -10.94 -46.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012784571.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.775 kcal (2) G-P(sol) polarization free energy of solvation -35.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds