Wall clock time and date at job start Tue Mar 31 2020 05:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.75331 * 124.34661 * 2 1 4 4 C 1.75896 * 92.17456 * 179.97438 * 3 2 1 5 5 N 1.34782 * 130.71659 * 179.97438 * 4 3 2 6 6 C 1.31142 * 121.58399 * 180.02562 * 5 4 3 7 7 S 1.76209 * 119.21007 * 180.02562 * 6 5 4 8 8 C 1.80997 * 100.00003 * 359.97438 * 7 6 5 9 9 C 1.50697 * 109.47155 * 180.02562 * 8 7 6 10 10 H 1.07996 * 119.99853 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99959 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99707 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 119.99968 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47325 * 90.00164 * 13 11 9 15 15 H 1.48504 * 109.46948 * 209.99966 * 13 11 9 16 16 H 1.48504 * 109.47222 * 330.00107 * 13 11 9 17 17 N 1.36490 * 121.57912 * 359.97438 * 6 5 4 18 18 C 1.46501 * 119.85596 * 180.02562 * 17 6 5 19 19 C 1.52996 * 109.46788 * 90.00725 * 18 17 6 20 20 C 1.53003 * 109.47100 * 174.99913 * 19 18 17 21 21 C 1.53001 * 109.47074 * 294.99723 * 19 18 17 22 22 C 1.34712 * 120.28380 * 0.25575 * 17 6 5 23 23 O 1.21909 * 120.55062 * 179.69107 * 22 17 6 24 24 C 1.39314 * 109.60815 * 0.02562 * 4 3 2 25 25 C 1.31872 * 124.34007 * 179.97438 * 2 1 3 26 26 C 1.50697 * 122.59419 * 359.97438 * 25 2 1 27 27 H 1.09005 * 109.46742 * 270.02235 * 1 2 3 28 28 H 1.08997 * 109.46841 * 30.01467 * 1 2 3 29 29 H 1.08997 * 109.47331 * 150.02236 * 1 2 3 30 30 H 1.09003 * 109.47474 * 300.00474 * 8 7 6 31 31 H 1.08998 * 109.47248 * 60.00059 * 8 7 6 32 32 H 0.96999 * 119.99354 * 179.97438 * 12 11 9 33 33 H 1.08999 * 109.46899 * 210.00620 * 18 17 6 34 34 H 1.09000 * 109.47308 * 330.00825 * 18 17 6 35 35 H 1.09000 * 109.47738 * 54.99307 * 19 18 17 36 36 H 1.08997 * 109.46915 * 59.99778 * 20 19 18 37 37 H 1.08997 * 109.46709 * 179.97438 * 20 19 18 38 38 H 1.08995 * 109.46994 * 299.99678 * 20 19 18 39 39 H 1.09005 * 109.47319 * 60.00302 * 21 19 18 40 40 H 1.09002 * 109.47171 * 180.02562 * 21 19 18 41 41 H 1.09005 * 109.47337 * 300.00122 * 21 19 18 42 42 H 1.09001 * 109.47189 * 270.02111 * 26 25 2 43 43 H 1.09002 * 109.47564 * 30.02220 * 26 25 2 44 44 H 1.08999 * 109.47268 * 150.02314 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4962 1.4476 0.0000 4 6 3.9851 0.5110 0.0008 5 7 5.2733 0.9076 0.0007 6 6 6.2584 0.0420 0.0009 7 16 7.9196 0.6297 0.0014 8 6 7.6213 2.4150 0.0008 9 6 8.9399 3.1446 0.0005 10 1 9.8652 2.5876 0.0012 11 6 8.9650 4.5231 0.0006 12 7 10.1158 5.1598 0.0009 13 14 7.3646 5.4864 0.0002 14 1 6.9401 5.7417 1.4002 15 1 7.5659 6.7806 -0.6998 16 1 6.3153 4.7028 -0.7001 17 7 6.0279 -1.3033 0.0017 18 6 7.1570 -2.2368 0.0024 19 6 7.5497 -2.5609 1.4452 20 6 8.6448 -3.6294 1.4479 21 6 8.0706 -1.2951 2.1286 22 6 4.7666 -1.7764 -0.0029 23 8 4.5550 -2.9770 -0.0079 24 6 3.6821 -0.8488 0.0004 25 6 2.2509 -1.0889 0.0005 26 6 1.6605 -2.4754 0.0017 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3634 -0.8901 -0.5135 30 1 7.0550 2.6885 -0.8895 31 1 7.0543 2.6889 0.8904 32 1 10.1334 6.1297 0.0005 33 1 6.8700 -3.1545 -0.5110 34 1 8.0042 -1.7827 -0.5114 35 1 6.6782 -2.9324 1.9843 36 1 9.5162 -3.2579 0.9088 37 1 8.9248 -3.8600 2.4757 38 1 8.2736 -4.5313 0.9610 39 1 7.2904 -0.5338 2.1267 40 1 8.3508 -1.5261 3.1564 41 1 8.9421 -0.9235 1.5896 42 1 1.5182 -2.8088 1.0296 43 1 0.6993 -2.4615 -0.5122 44 1 2.3370 -3.1588 -0.5116 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012798610.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:05 Heat of formation + Delta-G solvation = 0.463929 kcal Electronic energy + Delta-G solvation = -26970.318971 eV Core-core repulsion = 23332.990243 eV Total energy + Delta-G solvation = -3637.328729 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 352.102 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.59289 -37.96528 -37.42884 -36.17387 -33.50700 -33.18245 -31.27733 -29.58181 -29.27317 -27.42861 -27.28094 -26.33700 -24.16157 -23.29404 -22.64294 -20.47567 -19.55960 -18.71120 -17.94800 -17.19992 -16.97289 -16.46438 -16.25007 -15.35903 -14.90126 -14.57093 -14.46234 -14.30874 -13.87251 -13.72434 -13.55477 -13.42462 -13.06648 -12.84734 -12.78267 -12.71102 -12.51241 -12.44743 -12.40675 -12.15120 -11.88090 -11.73160 -11.28150 -11.15371 -10.96493 -10.92076 -10.85162 -10.81804 -10.29257 -10.07336 -9.88158 -9.79701 -9.71623 -9.44190 -8.84704 -8.51798 -8.17379 -7.19238 -6.32646 -4.38795 0.28870 1.09961 1.43051 1.69447 1.91065 2.07319 2.48500 2.98312 3.19160 3.27900 3.32553 3.54066 4.23026 4.31462 4.55038 4.69348 4.74324 4.85310 4.92030 5.00800 5.04134 5.15591 5.28823 5.32002 5.39861 5.44189 5.52247 5.57561 5.63985 5.70018 5.72088 5.85155 5.86486 5.90291 6.00968 6.06255 6.11680 6.26920 6.41994 6.46160 6.54699 6.57978 6.63613 7.22160 7.61583 7.84445 8.08274 8.62552 9.22446 10.78189 Molecular weight = 352.10amu Principal moments of inertia in cm(-1) A = 0.008898 B = 0.004743 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3146.072014 B = 5901.524975 C = 8767.383448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.220 4.220 3 S 0.174 5.826 4 C 0.115 3.885 5 N -0.516 5.516 6 C 0.375 3.625 7 S 0.024 5.976 8 C 0.019 3.981 9 C -0.530 4.530 10 H 0.084 0.916 11 C 0.090 3.910 12 N -0.885 5.885 13 Si 0.872 3.128 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.258 1.258 17 N -0.515 5.515 18 C 0.093 3.907 19 C -0.108 4.108 20 C -0.142 4.142 21 C -0.156 4.156 22 C 0.567 3.433 23 O -0.531 6.531 24 C -0.259 4.259 25 C -0.027 4.027 26 C -0.097 4.097 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.271 0.729 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.014 -13.613 1.099 18.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.337 4.337 3 S 0.437 5.563 4 C -0.124 4.124 5 N -0.244 5.244 6 C 0.001 3.999 7 S 0.262 5.738 8 C -0.129 4.129 9 C -0.570 4.570 10 H 0.102 0.898 11 C -0.117 4.117 12 N -0.521 5.521 13 Si 0.698 3.302 14 H -0.196 1.196 15 H -0.207 1.207 16 H -0.182 1.182 17 N -0.237 5.237 18 C -0.029 4.029 19 C -0.127 4.127 20 C -0.199 4.199 21 C -0.213 4.213 22 C 0.362 3.638 23 O -0.410 6.410 24 C -0.279 4.279 25 C -0.039 4.039 26 C -0.155 4.155 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.286 -12.378 1.078 17.473 hybrid contribution -1.672 -0.706 0.019 1.815 sum -13.958 -13.083 1.097 19.162 Atomic orbital electron populations 1.20286 0.87327 1.03018 1.02640 1.23602 1.00073 0.95343 1.14679 1.84070 0.90978 1.06077 1.75138 1.23890 0.96621 0.94394 0.97528 1.68646 0.96518 1.31863 1.27390 1.25954 1.02228 0.81517 0.90161 1.86093 0.91139 1.11057 1.85485 1.21897 1.02117 0.86779 1.02101 1.20356 0.90315 0.91516 1.54774 0.89759 1.24757 0.96515 0.96943 0.93457 1.69846 1.24909 1.08978 1.48382 0.86866 0.84111 0.79942 0.79290 1.19629 1.20720 1.18220 1.46409 1.09122 1.06247 1.61899 1.22235 0.87492 0.93936 0.99275 1.21460 0.99437 0.97298 0.94527 1.21741 0.98043 0.97736 1.02423 1.22267 1.02269 0.96208 1.00598 1.16487 0.81342 0.88543 0.77387 1.90832 1.83422 1.15025 1.51681 1.20433 0.94528 0.92374 1.20535 1.19022 0.89347 0.96422 0.99062 1.20604 1.00365 0.92054 1.02525 0.90883 0.91398 0.90417 0.92593 0.92881 0.91936 0.87918 0.87961 0.90774 0.91921 0.91989 0.92485 0.92622 0.92402 0.90507 0.91139 0.91604 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 9.98 36.01 0.36 -0.29 16 2 C -0.22 -2.80 6.38 -36.21 -0.23 -3.03 16 3 S 0.17 2.51 23.20 -107.50 -2.49 0.02 16 4 C 0.11 2.03 7.69 -15.86 -0.12 1.91 16 5 N -0.52 -9.90 9.12 -11.40 -0.10 -10.00 16 6 C 0.37 6.66 6.49 -88.50 -0.57 6.09 16 7 S 0.02 0.44 16.04 -107.50 -1.72 -1.29 16 8 C 0.02 0.43 3.63 36.00 0.13 0.56 16 9 C -0.53 -13.81 9.68 -34.44 -0.33 -14.14 16 10 H 0.08 2.34 7.95 -52.49 -0.42 1.92 16 11 C 0.09 2.42 5.47 -17.82 -0.10 2.32 16 12 N -0.88 -25.27 13.96 55.43 0.77 -24.49 16 13 Si 0.87 20.32 27.47 -169.99 -4.67 15.65 16 14 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 17 N -0.52 -8.35 2.49 -119.03 -0.30 -8.65 16 18 C 0.09 1.22 4.67 -4.04 -0.02 1.20 16 19 C -0.11 -1.30 3.13 -90.62 -0.28 -1.58 16 20 C -0.14 -1.34 9.19 37.16 0.34 -1.00 16 21 C -0.16 -2.03 7.52 37.16 0.28 -1.75 16 22 C 0.57 9.89 7.50 -14.56 -0.11 9.78 16 23 O -0.53 -9.60 14.73 5.00 0.07 -9.53 16 24 C -0.26 -4.43 6.06 -105.05 -0.64 -5.07 16 25 C -0.03 -0.40 5.96 -103.80 -0.62 -1.02 16 26 C -0.10 -1.16 9.46 36.00 0.34 -0.82 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.58 6.51 -51.93 -0.34 0.24 16 30 H 0.06 1.29 7.17 -51.91 -0.37 0.92 16 31 H 0.05 1.20 7.54 -51.92 -0.39 0.81 16 32 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.10 1.29 7.42 -51.93 -0.39 0.91 16 34 H 0.10 1.25 6.55 -51.93 -0.34 0.91 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.85 5.80 -51.93 -0.30 0.54 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 1.01 6.65 -51.93 -0.35 0.67 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.62 6.49 -51.93 -0.34 0.28 16 44 H 0.08 1.11 6.59 -51.93 -0.34 0.77 16 LS Contribution 372.69 15.07 5.62 5.62 Total: -1.00 -29.84 372.69 -10.52 -40.36 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -6.12 Total: -0.84 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -1.57 Total: -6.85 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: 0.37 Total: -43.14 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.07 Total: -9.53 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.67 Total: 15.65 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -4.22 Total: -1.27 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.84 -10.52 -40.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012798610.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.822 kcal (2) G-P(sol) polarization free energy of solvation -29.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds