Wall clock time and date at job start Tue Mar 31 2020 05:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37317 * 125.82100 * 2 1 4 4 C 1.50697 * 125.59010 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.46970 * 270.30171 * 4 3 2 6 6 C 1.50706 * 109.47281 * 179.97438 * 5 4 3 7 7 N 1.34776 * 120.00225 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99778 * 359.97438 * 6 5 4 9 9 N 1.29424 * 108.83318 * 180.27711 * 3 2 1 10 10 N 1.40172 * 108.12981 * 359.74399 * 9 3 2 11 11 C 1.46497 * 126.35194 * 179.97438 * 10 9 3 12 12 N 1.46904 * 109.47175 * 269.99688 * 11 10 9 13 13 C 1.46901 * 110.99843 * 190.00137 * 12 11 10 14 14 C 1.50699 * 109.46774 * 168.95070 * 13 12 11 15 15 H 1.08004 * 120.00319 * 354.95253 * 14 13 12 16 16 C 1.37880 * 120.00139 * 174.95613 * 14 13 12 17 17 N 1.31511 * 119.99669 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00064 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47340 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47000 * 119.99817 * 18 16 14 21 21 H 1.48498 * 109.47300 * 239.99432 * 18 16 14 22 22 C 1.46895 * 110.99757 * 66.04673 * 12 11 10 23 23 C 1.52996 * 109.47242 * 62.07198 * 22 12 11 24 24 C 1.47201 * 109.47249 * 179.56274 * 23 22 12 25 25 N 6.98103 * 150.97812 * 309.72729 * 2 1 3 26 26 C 1.34813 * 125.83374 * 179.82534 * 2 1 3 27 27 S 1.71198 * 126.29893 * 359.97438 * 26 2 1 28 28 H 1.09005 * 109.46713 * 270.20203 * 1 2 3 29 29 H 1.08996 * 109.47583 * 30.20265 * 1 2 3 30 30 H 1.09005 * 109.47058 * 150.20727 * 1 2 3 31 31 H 1.09005 * 109.46892 * 30.29663 * 4 3 2 32 32 H 1.08997 * 109.47836 * 150.30289 * 4 3 2 33 33 H 1.09000 * 109.47591 * 299.99396 * 5 4 3 34 34 H 1.09003 * 109.47225 * 59.99930 * 5 4 3 35 35 H 0.97002 * 119.99710 * 0.02562 * 7 6 5 36 36 H 0.96993 * 120.00297 * 179.97438 * 7 6 5 37 37 H 1.09002 * 109.47213 * 29.99772 * 11 10 9 38 38 H 1.09006 * 109.47265 * 150.00249 * 11 10 9 39 39 H 1.09000 * 109.47032 * 288.94466 * 13 12 11 40 40 H 1.08993 * 109.47539 * 48.95149 * 13 12 11 41 41 H 0.97001 * 119.99721 * 179.97438 * 17 16 14 42 42 H 1.09005 * 109.47089 * 182.06999 * 22 12 11 43 43 H 1.08999 * 109.47276 * 302.06875 * 22 12 11 44 44 H 1.09002 * 109.47370 * 299.55753 * 23 22 12 45 45 H 1.08999 * 109.47777 * 59.55854 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.1134 0.0000 4 6 1.7883 2.5418 0.0005 5 6 1.6180 3.0231 -1.4417 6 6 1.1370 4.4513 -1.4413 7 7 0.9153 5.0882 -2.6082 8 8 0.9485 5.0273 -0.3908 9 7 3.5064 0.7353 -0.0059 10 7 3.5344 -0.6661 -0.0040 11 6 4.7313 -1.5108 -0.0096 12 7 5.1235 -1.7952 -1.3965 13 6 6.1697 -2.8252 -1.4470 14 6 6.3538 -3.2847 -2.8704 15 1 5.6994 -2.9152 -3.6461 16 6 7.3577 -4.1769 -3.1824 17 7 8.1548 -4.6264 -2.2380 18 14 7.5855 -4.7469 -4.9467 19 1 6.5678 -4.0982 -5.8119 20 1 8.9440 -4.3735 -5.4160 21 1 7.4263 -6.2218 -5.0148 22 6 5.5567 -0.5707 -2.0826 23 6 6.7881 0.0009 -1.3771 24 6 7.2284 1.2221 -2.0710 25 7 7.5695 2.1646 -2.6048 26 6 2.2543 -1.0929 0.0033 27 16 1.7290 -2.7223 0.0089 28 1 -0.3633 0.0036 1.0277 29 1 -0.3634 0.8881 -0.5169 30 1 -0.3633 -0.8919 -0.5106 31 1 0.8316 2.6031 0.5194 32 1 2.5187 3.1707 0.5095 33 1 2.5746 2.9618 -1.9607 34 1 0.8875 2.3943 -1.9508 35 1 1.0650 4.6271 -3.4484 36 1 0.6054 6.0073 -2.6079 37 1 5.5443 -0.9924 0.4988 38 1 4.5180 -2.4468 0.5068 39 1 7.1065 -2.4102 -1.0752 40 1 5.8760 -3.6722 -0.8270 41 1 8.8608 -5.2544 -2.4575 42 1 5.8064 -0.8033 -3.1179 43 1 4.7512 0.1632 -2.0593 44 1 6.5363 0.2408 -0.3441 45 1 7.5911 -0.7360 -1.3936 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012849063.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:04 Heat of formation + Delta-G solvation = 88.958348 kcal Electronic energy + Delta-G solvation = -29002.844657 eV Core-core repulsion = 24991.185965 eV Total energy + Delta-G solvation = -4011.658692 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 352.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.78788 -40.00819 -38.20418 -36.24394 -35.30514 -34.53323 -34.16650 -32.75322 -31.83297 -30.30645 -28.59991 -27.19422 -26.25477 -25.06524 -23.91910 -22.77166 -21.47604 -20.77325 -20.31876 -18.13671 -17.92831 -17.56471 -17.19504 -16.84159 -16.78500 -16.38289 -15.88317 -15.61851 -15.37862 -14.87560 -14.54196 -14.47635 -13.98027 -13.91924 -13.85756 -13.53879 -13.44527 -13.08951 -12.82460 -12.46788 -12.33498 -12.18413 -12.05682 -11.80351 -11.71446 -11.50377 -11.25384 -11.08870 -10.85972 -10.85223 -10.73149 -10.54678 -10.48175 -10.29607 -10.22526 -9.99395 -9.42623 -8.54708 -7.73729 -7.47295 -7.32011 -6.13766 -4.15229 1.18136 1.41035 1.45567 2.09136 2.29889 2.50970 2.99945 3.01453 3.04143 3.27534 3.36240 3.40089 3.86402 4.04420 4.15693 4.19984 4.35186 4.37254 4.54809 4.59430 4.69744 4.86623 4.88043 5.02348 5.15920 5.22913 5.24990 5.33524 5.34866 5.41468 5.46335 5.64429 5.73640 6.03307 6.07781 6.23098 6.33755 6.42758 6.75535 6.90998 7.01482 7.16065 7.57790 7.70308 7.70919 7.83206 7.93048 8.26571 8.91107 9.49838 10.96544 Molecular weight = 352.14amu Principal moments of inertia in cm(-1) A = 0.010030 B = 0.003216 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.928098 B = 8704.506203 C =10284.795029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.500 5.500 3 C 0.260 3.740 4 C -0.023 4.023 5 C -0.143 4.143 6 C 0.523 3.477 7 N -0.854 5.854 8 O -0.542 6.542 9 N -0.270 5.270 10 N -0.361 5.361 11 C 0.299 3.701 12 N -0.531 5.531 13 C 0.194 3.806 14 C -0.508 4.508 15 H 0.065 0.935 16 C 0.060 3.940 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.283 1.283 22 C 0.073 3.927 23 C -0.073 4.073 24 C 0.227 3.773 25 N -0.459 5.459 26 C 0.472 3.528 27 S -0.571 6.571 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.404 0.596 36 H 0.404 0.596 37 H 0.075 0.925 38 H 0.127 0.873 39 H 0.011 0.989 40 H 0.040 0.960 41 H 0.263 0.737 42 H 0.096 0.904 43 H 0.060 0.940 44 H 0.098 0.902 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.184 16.969 3.688 23.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.202 5.202 3 C -0.020 4.020 4 C -0.064 4.064 5 C -0.184 4.184 6 C 0.308 3.692 7 N -0.418 5.418 8 O -0.419 6.419 9 N -0.090 5.090 10 N -0.154 5.154 11 C 0.090 3.910 12 N -0.255 5.255 13 C 0.070 3.930 14 C -0.546 4.546 15 H 0.084 0.916 16 C -0.142 4.142 17 N -0.534 5.534 18 Si 0.724 3.276 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.209 1.209 22 C -0.058 4.058 23 C -0.115 4.115 24 C -0.090 4.090 25 N -0.137 5.137 26 C 0.113 3.887 27 S -0.443 6.443 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.128 0.872 31 H 0.123 0.877 32 H 0.134 0.866 33 H 0.126 0.874 34 H 0.119 0.881 35 H 0.233 0.767 36 H 0.235 0.765 37 H 0.093 0.907 38 H 0.145 0.855 39 H 0.029 0.971 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.115 0.885 43 H 0.079 0.921 44 H 0.116 0.884 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.211 17.514 3.454 22.817 hybrid contribution 0.328 0.225 -0.855 0.943 sum -13.882 17.739 2.599 22.675 Atomic orbital electron populations 1.22166 0.73159 1.05838 1.04785 1.46084 1.09559 1.03905 1.60619 1.24571 0.86305 0.92336 0.98785 1.19965 1.04475 0.84592 0.97341 1.21662 1.04863 0.93789 0.98119 1.20402 0.76460 0.88567 0.83804 1.43862 1.71058 1.18154 1.08716 1.90787 1.51587 1.68307 1.31179 1.77177 1.16955 0.92517 1.22392 1.49694 1.06250 1.01992 1.57479 1.22511 0.81037 0.93331 0.94132 1.62278 1.43464 1.08834 1.10919 1.19879 0.85900 0.88034 0.99169 1.21046 1.14579 1.26046 0.92978 0.91644 1.24923 0.95644 0.96112 0.97506 1.69932 1.19019 1.32112 1.32306 0.86455 0.77813 0.78695 0.84591 1.19657 1.21155 1.20879 1.22061 0.92452 0.90978 1.00272 1.20184 1.02802 0.89452 0.99025 1.29097 0.92581 0.94070 0.93254 1.81118 1.09977 1.12421 1.10158 1.23859 0.83711 0.93813 0.87301 1.93467 1.82974 0.95002 1.72893 0.89660 0.89218 0.87222 0.87692 0.86645 0.87379 0.88072 0.76715 0.76542 0.90742 0.85507 0.97133 0.94181 0.92769 0.88527 0.92126 0.88359 0.85757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.55 10.52 59.85 0.63 1.17 16 2 N -0.50 -5.27 3.14 -121.97 -0.38 -5.65 16 3 C 0.26 2.47 7.24 -154.18 -1.12 1.36 16 4 C -0.02 -0.15 4.60 -27.88 -0.13 -0.27 16 5 C -0.14 -0.71 5.68 -27.88 -0.16 -0.87 16 6 C 0.52 3.35 8.10 -10.98 -0.09 3.26 16 7 N -0.85 -3.01 8.87 31.22 0.28 -2.73 16 8 O -0.54 -5.64 16.82 5.56 0.09 -5.54 16 9 N -0.27 -3.28 11.52 32.97 0.38 -2.90 16 10 N -0.36 -5.23 3.34 -64.99 -0.22 -5.45 16 11 C 0.30 4.65 5.73 -63.31 -0.36 4.28 16 12 N -0.53 -9.67 4.83 -239.98 -1.16 -10.83 16 13 C 0.19 4.27 4.53 -4.98 -0.02 4.24 16 14 C -0.51 -12.84 8.40 -34.44 -0.29 -13.13 16 15 H 0.07 1.69 7.38 -52.48 -0.39 1.30 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 17 N -0.89 -24.49 13.29 55.43 0.74 -23.75 16 18 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 22 C 0.07 1.17 5.01 -3.83 -0.02 1.15 16 23 C -0.07 -1.04 5.05 -29.52 -0.15 -1.19 16 24 C 0.23 3.53 15.43 -20.77 -0.32 3.21 16 25 N -0.46 -7.96 18.53 42.14 0.78 -7.18 16 26 C 0.47 7.05 7.86 -86.74 -0.68 6.37 16 27 S -0.57 -10.70 29.61 -107.50 -3.18 -13.89 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.29 7.67 -51.93 -0.40 -0.10 16 30 H 0.11 0.88 7.64 -51.93 -0.40 0.48 16 31 H 0.10 0.52 7.69 -51.93 -0.40 0.12 16 32 H 0.12 0.79 8.10 -51.93 -0.42 0.37 16 33 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.40 0.47 8.83 -40.82 -0.36 0.11 16 36 H 0.40 1.19 8.93 -40.82 -0.36 0.82 16 37 H 0.08 1.00 6.07 -51.93 -0.32 0.68 16 38 H 0.13 2.11 7.47 -51.93 -0.39 1.73 16 39 H 0.01 0.24 6.00 -51.93 -0.31 -0.07 16 40 H 0.04 0.97 7.91 -51.93 -0.41 0.56 16 41 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.10 1.76 6.99 -51.93 -0.36 1.40 16 43 H 0.06 0.93 6.74 -51.93 -0.35 0.58 16 44 H 0.10 1.21 6.34 -51.93 -0.33 0.88 16 45 H 0.12 1.94 6.27 -51.93 -0.33 1.62 16 LS Contribution 397.18 15.07 5.99 5.99 Total: -1.00 -35.80 397.18 -10.44 -46.23 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -5.92 Total: -1.06 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: -2.80 Total: 11.08 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: 0.41 Total: -58.51 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: 0.09 Total: -5.54 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: -10.70 SS G_CDS: -3.18 Total: -13.89 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.80 -10.44 -46.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012849063.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.193 kcal (2) G-P(sol) polarization free energy of solvation -35.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds