Wall clock time and date at job start Tue Mar 31 2020 06:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30843 * 125.89796 * 2 1 4 4 N 1.40088 * 108.20169 * 180.02562 * 3 2 1 5 5 C 1.46494 * 126.03156 * 179.97438 * 4 3 2 6 6 C 1.50707 * 109.47253 * 90.02678 * 5 4 3 7 7 H 1.07999 * 119.99402 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00164 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00193 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00156 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46686 * 60.00280 * 10 8 6 12 12 H 1.48492 * 109.47239 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47080 * 300.00638 * 10 8 6 14 14 C 1.34940 * 107.92727 * 359.75810 * 4 3 2 15 15 C 1.50700 * 126.12902 * 180.24000 * 14 4 3 16 16 C 1.35317 * 107.74696 * 0.38626 * 14 4 3 17 17 C 1.50699 * 126.04168 * 179.87377 * 16 14 4 18 18 C 1.53001 * 109.47194 * 269.71727 * 17 16 14 19 19 C 1.50702 * 109.46830 * 179.97438 * 18 17 16 20 20 O 1.21280 * 120.00266 * 359.97438 * 19 18 17 21 21 N 1.34781 * 119.99563 * 180.02562 * 19 18 17 22 22 C 1.46538 * 124.97546 * 180.02562 * 21 19 18 23 23 C 1.53744 * 105.19777 * 179.97438 * 22 21 19 24 24 C 1.51221 * 104.57881 * 0.02562 * 23 22 21 25 25 C 1.38189 * 130.97094 * 179.97438 * 24 23 22 26 26 C 1.38221 * 120.15127 * 180.02562 * 25 24 23 27 27 C 1.38300 * 119.82719 * 0.02562 * 26 25 24 28 28 C 1.37845 * 120.22254 * 359.97438 * 27 26 25 29 29 C 1.38560 * 108.55919 * 0.02562 * 24 23 22 30 30 H 1.09007 * 109.47267 * 269.98228 * 1 2 3 31 31 H 1.08998 * 109.47021 * 29.97546 * 1 2 3 32 32 H 1.08993 * 109.47244 * 149.97679 * 1 2 3 33 33 H 1.09001 * 109.47060 * 210.02680 * 5 4 3 34 34 H 1.08999 * 109.47848 * 330.02804 * 5 4 3 35 35 H 0.97003 * 120.00193 * 179.97438 * 9 8 6 36 36 H 1.08995 * 109.47059 * 270.17473 * 15 14 4 37 37 H 1.09004 * 109.46949 * 30.17708 * 15 14 4 38 38 H 1.09001 * 109.47501 * 150.17428 * 15 14 4 39 39 H 1.09000 * 109.47021 * 149.71669 * 17 16 14 40 40 H 1.09006 * 109.47128 * 29.71707 * 17 16 14 41 41 H 1.09000 * 109.47184 * 60.00041 * 18 17 16 42 42 H 1.08998 * 109.47081 * 299.99341 * 18 17 16 43 43 H 1.08999 * 110.30223 * 298.92822 * 22 21 19 44 44 H 1.08999 * 110.30243 * 60.97353 * 22 21 19 45 45 H 1.08994 * 110.40582 * 241.23306 * 23 22 21 46 46 H 1.08991 * 110.42567 * 118.77886 * 23 22 21 47 47 H 1.08006 * 119.92458 * 0.02562 * 25 24 23 48 48 H 1.07998 * 120.09094 * 179.97438 * 26 25 24 49 49 H 1.08003 * 119.89428 * 180.02562 * 27 26 25 50 50 H 1.08006 * 119.85683 * 179.74440 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7898 1.5008 -0.0013 6 6 5.1960 1.7977 1.4193 7 1 4.6310 1.3819 2.2405 8 6 6.2893 2.5991 1.6705 9 7 6.9775 3.1050 0.6705 10 14 6.7923 2.9678 3.4314 11 1 7.1102 1.6973 4.1316 12 1 7.9895 3.8462 3.4307 13 1 5.6765 3.6530 4.1317 14 6 3.6142 -0.7153 0.0045 15 6 4.8350 -1.5989 0.0109 16 6 2.3271 -1.1330 -0.0005 17 6 1.8599 -2.5657 -0.0002 18 6 1.7013 -3.0507 -1.4427 19 6 1.2347 -4.4837 -1.4423 20 8 1.0478 -5.0603 -0.3918 21 7 1.0260 -5.1247 -2.6094 22 6 0.5734 -6.5127 -2.7362 23 6 0.4886 -6.7722 -4.2492 24 6 0.9146 -5.4674 -4.8838 25 6 1.0343 -5.1019 -6.2111 26 6 1.4510 -3.8271 -6.5453 27 6 1.7488 -2.9170 -5.5474 28 6 1.6308 -3.2772 -4.2221 29 6 1.2106 -4.5631 -3.8766 30 1 -0.3634 -0.0003 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3633 -0.8897 -0.5142 33 1 5.6089 0.9983 -0.5159 34 1 4.5559 2.4334 -0.5147 35 1 7.7466 3.6692 0.8473 36 1 5.1337 -1.8132 -1.0152 37 1 5.6489 -1.0903 0.5277 38 1 4.6053 -2.5323 0.5249 39 1 0.9012 -2.6351 0.5139 40 1 2.5935 -3.1871 0.5135 41 1 2.6600 -2.9813 -1.9568 42 1 0.9676 -2.4295 -1.9563 43 1 1.2939 -7.1889 -2.2761 44 1 -0.4066 -6.6345 -2.2751 45 1 -0.5337 -7.0188 -4.5357 46 1 1.1687 -7.5740 -4.5363 47 1 0.8018 -5.8140 -6.9891 48 1 1.5447 -3.5426 -7.5829 49 1 2.0741 -1.9205 -5.8073 50 1 1.8688 -2.5630 -3.4476 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013012400.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:56 Heat of formation + Delta-G solvation = 58.802104 kcal Electronic energy + Delta-G solvation = -30829.772991 eV Core-core repulsion = 26823.017451 eV Total energy + Delta-G solvation = -4006.755540 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 353.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.45238 -40.58738 -39.00418 -36.51896 -34.52672 -33.69970 -32.81787 -32.49515 -30.33069 -29.96632 -29.36930 -28.96918 -26.93743 -25.89807 -24.56944 -23.48699 -22.94901 -22.14053 -21.32223 -20.00791 -18.83230 -18.66522 -17.40184 -16.73306 -16.68125 -16.65962 -15.98584 -15.51782 -15.08144 -14.86719 -14.67148 -14.42249 -14.13708 -13.95272 -13.67978 -13.22758 -13.04142 -12.99444 -12.92464 -12.70316 -12.69465 -12.52111 -12.33211 -12.15407 -12.13772 -11.91416 -11.75658 -11.62428 -11.38492 -11.28253 -11.00463 -10.91238 -10.81777 -10.79260 -10.54114 -10.28274 -10.15502 -9.76220 -9.63162 -9.10136 -8.65744 -8.19902 -8.06831 -7.50894 -6.27622 -4.35292 0.97508 1.07154 2.44300 2.47118 2.75676 3.22262 3.26142 3.30100 3.34561 3.50583 3.59662 4.01994 4.13161 4.28524 4.46423 4.67598 4.68322 4.81875 5.02401 5.05415 5.09575 5.11978 5.17431 5.19932 5.27985 5.30959 5.34338 5.45952 5.48016 5.60273 5.66574 5.73301 5.81868 5.83846 5.90083 5.95343 5.99424 6.00695 6.11566 6.15946 6.21895 6.29358 6.33024 6.44462 6.51179 6.64559 6.85652 7.00107 7.09498 7.16940 7.48954 7.64850 7.79081 7.86959 8.03955 8.64891 8.73873 9.31369 10.79864 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.015045 B = 0.002334 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.675165 B =11992.745613 C =12531.300483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.051 3.949 3 N -0.296 5.296 4 N -0.324 5.324 5 C 0.257 3.743 6 C -0.537 4.537 7 H 0.063 0.937 8 C 0.066 3.934 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.274 1.274 14 C 0.096 3.904 15 C -0.093 4.093 16 C -0.270 4.270 17 C -0.012 4.012 18 C -0.137 4.137 19 C 0.525 3.475 20 O -0.516 6.516 21 N -0.558 5.558 22 C 0.105 3.895 23 C -0.085 4.085 24 C -0.141 4.141 25 C -0.076 4.076 26 C -0.145 4.145 27 C -0.084 4.084 28 C -0.159 4.159 29 C 0.149 3.851 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.269 0.731 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.124 0.876 48 H 0.126 0.874 49 H 0.130 0.870 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.955 -18.929 -14.312 26.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.113 4.113 3 N -0.119 5.119 4 N -0.104 5.104 5 C 0.140 3.860 6 C -0.576 4.576 7 H 0.081 0.919 8 C -0.137 4.137 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.199 1.199 14 C -0.036 4.036 15 C -0.151 4.151 16 C -0.282 4.282 17 C -0.051 4.051 18 C -0.176 4.176 19 C 0.317 3.683 20 O -0.390 6.390 21 N -0.282 5.282 22 C -0.016 4.016 23 C -0.123 4.123 24 C -0.144 4.144 25 C -0.094 4.094 26 C -0.164 4.164 27 C -0.102 4.102 28 C -0.180 4.180 29 C 0.053 3.947 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.142 0.858 48 H 0.144 0.856 49 H 0.148 0.852 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.712 -17.713 -13.573 25.202 hybrid contribution 0.456 -0.480 0.867 1.091 sum -11.256 -18.194 -12.706 24.883 Atomic orbital electron populations 1.20024 0.88063 1.02069 1.02168 1.21943 0.96094 0.90734 1.02528 1.77281 0.87514 1.22609 1.24533 1.49257 1.05771 1.04169 1.51182 1.19651 0.77926 0.89579 0.98888 1.21275 1.13053 1.31889 0.91356 0.91854 1.24922 0.95707 0.94977 0.98121 1.69908 1.19038 1.32923 1.31086 0.86417 0.78041 0.78508 0.83756 1.19926 1.20924 1.19940 1.20760 0.96066 0.85695 1.01037 1.20415 0.94474 0.97823 1.02366 1.19294 0.91432 0.94858 1.22653 1.19448 1.01782 0.91191 0.92716 1.22150 1.03152 0.90495 1.01805 1.21086 0.76225 0.89388 0.81628 1.90720 1.49753 1.68464 1.30098 1.46120 1.64141 1.13445 1.04447 1.22024 1.01157 0.81877 0.96573 1.21115 1.02900 0.95590 0.92662 1.20010 1.05485 0.95775 0.93126 1.20387 0.98628 0.96482 0.93928 1.21049 1.02208 0.93585 0.99560 1.20978 0.97696 0.99780 0.91780 1.21275 1.04105 0.94563 0.98038 1.18368 0.97937 0.94007 0.84355 0.91346 0.91558 0.91530 0.93087 0.93038 0.92182 0.91236 0.89894 0.90703 0.91142 0.91228 0.88231 0.88208 0.89982 0.89980 0.89179 0.89171 0.85818 0.85588 0.85159 0.84004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.12 36.00 0.36 -0.55 16 2 C 0.05 0.97 7.22 -82.41 -0.59 0.38 16 3 N -0.30 -6.73 12.58 33.67 0.42 -6.31 16 4 N -0.32 -7.49 3.59 -58.31 -0.21 -7.70 16 5 C 0.26 6.56 5.82 -5.19 -0.03 6.53 16 6 C -0.54 -14.80 9.39 -34.44 -0.32 -15.13 16 7 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 8 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 9 N -0.89 -25.05 13.29 55.43 0.74 -24.32 16 10 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 14 C 0.10 1.89 6.93 -82.27 -0.57 1.31 16 15 C -0.09 -1.52 9.68 36.01 0.35 -1.17 16 16 C -0.27 -4.78 5.35 -105.05 -0.56 -5.34 16 17 C -0.01 -0.18 4.45 -27.88 -0.12 -0.30 16 18 C -0.14 -1.66 3.51 -27.88 -0.10 -1.76 16 19 C 0.53 6.82 7.80 -10.98 -0.09 6.74 16 20 O -0.52 -8.14 16.27 5.56 0.09 -8.05 16 21 N -0.56 -6.19 3.13 -112.90 -0.35 -6.55 16 22 C 0.11 0.90 7.06 -3.63 -0.03 0.88 16 23 C -0.09 -0.56 6.94 -27.24 -0.19 -0.74 16 24 C -0.14 -1.22 6.23 -104.27 -0.65 -1.87 16 25 C -0.08 -0.57 10.04 -39.61 -0.40 -0.97 16 26 C -0.14 -1.11 10.06 -39.56 -0.40 -1.51 16 27 C -0.08 -0.73 10.02 -39.70 -0.40 -1.13 16 28 C -0.16 -1.61 8.88 -39.21 -0.35 -1.95 16 29 C 0.15 1.55 6.59 -83.57 -0.55 1.00 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.79 7.92 -51.93 -0.41 0.38 16 33 H 0.05 1.28 7.68 -51.93 -0.40 0.89 16 34 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.08 1.50 7.74 -51.93 -0.40 1.10 16 38 H 0.07 1.06 7.14 -51.93 -0.37 0.69 16 39 H 0.07 1.02 7.88 -51.93 -0.41 0.61 16 40 H 0.07 1.03 7.09 -51.93 -0.37 0.66 16 41 H 0.10 1.16 6.90 -51.93 -0.36 0.80 16 42 H 0.10 1.13 6.92 -51.93 -0.36 0.77 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 48 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 49 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 50 H 0.14 1.44 4.21 -52.48 -0.22 1.22 16 LS Contribution 410.15 15.07 6.18 6.18 Total: -1.00 -32.72 410.15 -10.38 -43.10 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -7.49 Total: 1.38 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -4.73 Total: -13.90 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.60 Total: -44.88 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.09 Total: -8.05 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.72 -10.38 -43.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013012400.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.901 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds