Wall clock time and date at job start Tue Mar 31 2020 05:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35946 * 116.99782 * 2 1 4 4 C 1.38039 * 120.00430 * 0.02562 * 3 2 1 5 5 C 1.40043 * 119.84089 * 180.02562 * 4 3 2 6 6 C 1.46851 * 120.08360 * 180.02562 * 5 4 3 7 7 C 1.35256 * 120.00304 * 38.22445 * 6 5 4 8 8 C 1.50874 * 120.68664 * 7.63827 * 7 6 5 9 9 O 1.42676 * 110.25465 * 147.77012 * 8 7 6 10 10 C 1.35437 * 118.14063 * 49.78605 * 9 8 7 11 11 C 1.38567 * 120.90442 * 144.94635 * 10 9 8 12 12 C 1.38162 * 119.91761 * 179.69117 * 11 10 9 13 13 C 1.38563 * 120.63040 * 0.02562 * 12 11 10 14 14 C 1.37983 * 120.25466 * 0.04729 * 13 12 11 15 15 C 1.39214 * 119.55234 * 359.97438 * 14 13 12 16 16 C 1.42722 * 120.69155 * 187.62166 * 7 6 5 17 17 O 1.21790 * 121.47187 * 1.84499 * 16 7 6 18 18 C 1.40098 * 119.83152 * 0.27514 * 5 4 3 19 19 C 1.37611 * 119.99901 * 359.44186 * 18 5 4 20 20 C 1.39092 * 120.15946 * 0.56287 * 19 18 5 21 21 O 1.35594 * 119.91767 * 179.73919 * 20 19 18 22 22 C 1.34740 * 116.99324 * 5.79634 * 21 20 19 23 23 H 1.07994 * 120.00686 * 354.89428 * 22 21 20 24 24 C 1.38747 * 119.99511 * 174.89841 * 22 21 20 25 25 N 1.31493 * 120.00101 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99773 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47231 * 89.99776 * 26 24 22 28 28 H 1.48506 * 109.47129 * 209.99929 * 26 24 22 29 29 H 1.48504 * 109.47410 * 329.99805 * 26 24 22 30 30 H 1.09005 * 109.47154 * 299.99419 * 1 2 3 31 31 H 1.08994 * 109.47458 * 59.99968 * 1 2 3 32 32 H 1.09005 * 109.47353 * 180.02562 * 1 2 3 33 33 H 1.08009 * 120.07611 * 359.97438 * 4 3 2 34 34 H 1.08004 * 119.99985 * 218.22389 * 6 5 4 35 35 H 1.08999 * 109.33707 * 268.00704 * 8 7 6 36 36 H 1.08998 * 109.33386 * 27.68642 * 8 7 6 37 37 H 1.08004 * 120.04369 * 359.71887 * 11 10 9 38 38 H 1.08001 * 119.68362 * 180.02562 * 12 11 10 39 39 H 1.08006 * 119.87186 * 179.77100 * 13 12 11 40 40 H 1.08005 * 120.22449 * 179.97438 * 14 13 12 41 41 H 1.08008 * 120.00241 * 179.70448 * 18 5 4 42 42 H 1.07995 * 119.92130 * 180.29416 * 19 18 5 43 43 H 0.97006 * 119.99736 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2943 2.3690 0.0005 5 6 1.9336 3.6150 0.0000 6 6 1.1391 4.8500 0.0011 7 6 0.0001 4.9208 0.7272 8 6 -0.3802 3.8089 1.6734 9 8 -1.0883 4.3351 2.7947 10 6 -2.1273 5.1713 2.5589 11 6 -3.2473 5.1626 3.3748 12 6 -4.2927 6.0289 3.1193 13 6 -4.2346 6.9101 2.0516 14 6 -3.1280 6.9318 1.2276 15 6 -2.0695 6.0625 1.4764 16 6 -0.8667 6.0491 0.6145 17 8 -0.6271 6.9604 -0.1571 18 6 3.3331 3.6803 -0.0069 19 6 4.0759 2.5219 -0.0016 20 6 3.4408 1.2845 -0.0011 21 8 4.1776 0.1462 -0.0011 22 6 5.5127 0.2818 0.1196 23 1 5.9570 1.2661 0.1277 24 6 6.3167 -0.8432 0.2334 25 7 5.7758 -2.0416 0.2239 26 14 8.1676 -0.6551 0.4015 27 1 8.5268 -0.5582 1.8391 28 1 8.8415 -1.8346 -0.1987 29 1 8.6060 0.5768 -0.3024 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 0.2156 2.3140 0.0005 34 1 1.4642 5.7018 -0.5779 35 1 -1.0130 3.0913 1.1512 36 1 0.5225 3.3075 2.0224 37 1 -3.3027 4.4797 4.2098 38 1 -5.1637 6.0192 3.7580 39 1 -5.0605 7.5794 1.8609 40 1 -3.0834 7.6185 0.3952 41 1 3.8289 4.6398 -0.0122 42 1 5.1546 2.5737 -0.0021 43 1 6.3379 -2.8281 0.3038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013137346.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:41 Heat of formation + Delta-G solvation = -56.614494 kcal Electronic energy + Delta-G solvation = -29802.070765 eV Core-core repulsion = 25551.777357 eV Total energy + Delta-G solvation = -4250.293408 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.119 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.10020 -39.85175 -38.53241 -37.89756 -37.74763 -36.63011 -33.78797 -32.51503 -31.51598 -30.50985 -29.77910 -29.19517 -27.51187 -26.16792 -25.50896 -24.74593 -22.83572 -22.28816 -21.71726 -20.69910 -18.68249 -18.57780 -18.21795 -17.33707 -16.80090 -16.60655 -16.29566 -15.57737 -15.39851 -15.30749 -15.04424 -14.84347 -14.53341 -14.21953 -14.12696 -14.00203 -13.88132 -13.70317 -13.55547 -13.48127 -12.94420 -12.57584 -12.30131 -12.22729 -11.92478 -11.73116 -11.64422 -11.48537 -11.28517 -11.10367 -10.88426 -10.74824 -10.61500 -10.56630 -9.80314 -9.71977 -9.36007 -9.27369 -8.96541 -8.52043 -8.13427 -7.08715 -6.71512 -4.21921 0.29717 1.00655 1.12935 1.96181 2.18006 2.84114 3.00281 3.01294 3.06143 3.29877 3.64642 3.75743 3.83152 4.04302 4.26438 4.48788 4.62381 4.73211 4.77501 4.89134 4.96492 5.02393 5.09142 5.14433 5.22853 5.33120 5.37453 5.43426 5.49107 5.49895 5.64838 5.70135 5.74181 5.90822 5.97136 6.02332 6.10262 6.16721 6.19815 6.32772 6.35682 6.46700 6.69186 6.82579 6.97627 7.08266 7.22344 7.34322 7.55435 7.68583 7.95868 8.71257 9.38542 10.43761 Molecular weight = 352.12amu Principal moments of inertia in cm(-1) A = 0.020045 B = 0.002322 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.492686 B =12057.509820 C =12665.182615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.301 6.301 3 C 0.054 3.946 4 C -0.143 4.143 5 C -0.183 4.183 6 C 0.070 3.930 7 C -0.309 4.309 8 C 0.122 3.878 9 O -0.311 6.311 10 C 0.169 3.831 11 C -0.160 4.160 12 C -0.063 4.063 13 C -0.165 4.165 14 C -0.035 4.035 15 C -0.228 4.228 16 C 0.444 3.556 17 O -0.469 6.469 18 C -0.050 4.050 19 C -0.224 4.224 20 C 0.149 3.851 21 O -0.142 6.142 22 C -0.391 4.391 23 H 0.099 0.901 24 C 0.042 3.958 25 N -0.840 5.840 26 Si 0.946 3.054 27 H -0.270 1.270 28 H -0.275 1.275 29 H -0.264 1.264 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.094 0.906 33 H 0.125 0.875 34 H 0.132 0.868 35 H 0.066 0.934 36 H 0.126 0.874 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.117 0.883 42 H 0.139 0.861 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.054 11.289 3.488 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.215 6.215 3 C 0.009 3.991 4 C -0.162 4.162 5 C -0.184 4.184 6 C 0.051 3.949 7 C -0.311 4.311 8 C 0.048 3.952 9 O -0.225 6.225 10 C 0.123 3.877 11 C -0.179 4.179 12 C -0.081 4.081 13 C -0.183 4.183 14 C -0.053 4.053 15 C -0.230 4.230 16 C 0.328 3.672 17 O -0.350 6.350 18 C -0.068 4.068 19 C -0.243 4.243 20 C 0.092 3.908 21 O -0.042 6.042 22 C -0.466 4.466 23 H 0.117 0.883 24 C -0.165 4.165 25 N -0.471 5.471 26 Si 0.770 3.230 27 H -0.195 1.195 28 H -0.200 1.200 29 H -0.188 1.188 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.112 0.888 33 H 0.143 0.857 34 H 0.149 0.851 35 H 0.084 0.916 36 H 0.144 0.856 37 H 0.154 0.846 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.152 0.848 41 H 0.135 0.865 42 H 0.157 0.843 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.712 10.910 3.270 18.605 hybrid contribution 0.627 0.261 -0.124 0.690 sum -14.085 11.171 3.146 18.250 Atomic orbital electron populations 1.22942 0.80158 1.03292 1.00316 1.86249 1.19548 1.26072 1.89628 1.18008 0.89339 0.84554 1.07185 1.20970 0.98619 0.90800 1.05847 1.18150 0.93040 0.91113 1.16139 1.22373 0.88962 0.95208 0.88322 1.21630 1.01379 1.00848 1.07201 1.22035 0.96384 0.92354 0.84391 1.85855 1.41934 1.60051 1.34659 1.19139 0.86969 0.88216 0.93382 1.20695 0.91536 1.03035 1.02597 1.21183 0.97480 0.93285 0.96162 1.21105 0.99028 1.01408 0.96755 1.21100 0.91417 0.94887 0.97880 1.20782 0.99326 1.01692 1.01203 1.18840 0.83936 0.84874 0.79551 1.90636 1.73335 1.37064 1.33996 1.20860 0.91998 0.97637 0.96344 1.20836 1.00827 0.90630 1.12015 1.18904 0.88254 0.87632 0.96024 1.83975 1.19864 1.25964 1.74417 1.21567 0.78297 0.95192 1.51512 0.88346 1.25452 1.01072 0.94106 0.95914 1.70033 1.36895 0.97915 1.42297 0.85627 0.79536 0.78739 0.79125 1.19508 1.19973 1.18845 0.93483 0.93482 0.88766 0.85741 0.85078 0.91602 0.85650 0.84564 0.85060 0.85348 0.84838 0.86484 0.84315 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.39 16 2 O -0.30 -6.08 10.28 -34.18 -0.35 -6.43 16 3 C 0.05 1.09 6.70 -39.12 -0.26 0.83 16 4 C -0.14 -2.38 6.74 -38.98 -0.26 -2.64 16 5 C -0.18 -2.94 5.12 -105.04 -0.54 -3.48 16 6 C 0.07 1.02 9.33 -37.16 -0.35 0.67 16 7 C -0.31 -4.47 5.69 -103.87 -0.59 -5.06 16 8 C 0.12 1.63 5.18 36.09 0.19 1.82 16 9 O -0.31 -4.30 10.31 -18.00 -0.19 -4.48 16 10 C 0.17 2.17 6.45 -38.67 -0.25 1.92 16 11 C -0.16 -1.63 10.00 -39.49 -0.40 -2.02 16 12 C -0.06 -0.52 10.02 -39.49 -0.40 -0.92 16 13 C -0.16 -1.45 10.03 -39.56 -0.40 -1.85 16 14 C -0.03 -0.39 9.67 -39.31 -0.38 -0.77 16 15 C -0.23 -3.07 5.82 -104.75 -0.61 -3.68 16 16 C 0.44 6.73 6.93 -33.86 -0.23 6.50 16 17 O -0.47 -7.96 16.71 5.11 0.09 -7.88 16 18 C -0.05 -0.83 9.78 -39.11 -0.38 -1.21 16 19 C -0.22 -4.39 9.14 -39.49 -0.36 -4.75 16 20 C 0.15 3.39 6.67 -38.73 -0.26 3.13 16 21 O -0.14 -3.84 9.52 -13.83 -0.13 -3.97 16 22 C -0.39 -10.13 9.48 30.92 0.29 -9.84 16 23 H 0.10 2.30 5.18 -52.49 -0.27 2.03 16 24 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 25 N -0.84 -23.22 13.67 55.48 0.76 -22.46 16 26 Si 0.95 19.02 29.55 -169.99 -5.02 14.00 16 27 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 28 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 29 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 30 H 0.05 0.56 7.66 -51.93 -0.40 0.17 16 31 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 32 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.12 1.76 4.06 -52.48 -0.21 1.55 16 34 H 0.13 1.81 7.62 -52.48 -0.40 1.41 16 35 H 0.07 0.78 6.96 -51.93 -0.36 0.42 16 36 H 0.13 1.74 6.37 -51.93 -0.33 1.41 16 37 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 38 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 40 H 0.13 1.41 7.87 -52.48 -0.41 0.99 16 41 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 42 H 0.14 2.67 5.62 -52.49 -0.29 2.37 16 43 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 367.13 15.07 5.53 5.53 Total: -1.00 -30.99 367.13 -7.93 -38.92 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -4.33 Total: 5.75 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -4.29 Total: -18.98 kcal Atomic # 7 Polarization: -23.22 SS G_CDS: 0.76 Total: -22.46 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.58 Total: -22.76 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.99 -7.93 -38.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013137346.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.691 kcal (2) G-P(sol) polarization free energy of solvation -30.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds