Wall clock time and date at job start Tue Mar 31 2020 05:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35946 * 116.99782 * 2 1 4 4 C 1.38039 * 120.00430 * 0.02562 * 3 2 1 5 5 C 1.40043 * 119.84089 * 180.02562 * 4 3 2 6 6 C 1.46851 * 120.08360 * 180.02562 * 5 4 3 7 7 C 1.35256 * 120.00304 * 38.22445 * 6 5 4 8 8 C 1.50874 * 120.68664 * 7.63827 * 7 6 5 9 9 O 1.42676 * 110.25465 * 147.77012 * 8 7 6 10 10 C 1.35437 * 118.14063 * 49.78605 * 9 8 7 11 11 C 1.38567 * 120.90442 * 144.94635 * 10 9 8 12 12 C 1.38162 * 119.91761 * 179.69117 * 11 10 9 13 13 C 1.38563 * 120.63040 * 0.02562 * 12 11 10 14 14 C 1.37983 * 120.25466 * 0.04729 * 13 12 11 15 15 C 1.39214 * 119.55234 * 359.97438 * 14 13 12 16 16 C 1.42722 * 120.69155 * 187.62166 * 7 6 5 17 17 O 1.21790 * 121.47187 * 1.84499 * 16 7 6 18 18 C 1.40098 * 119.83152 * 0.27514 * 5 4 3 19 19 C 1.37611 * 119.99901 * 359.44186 * 18 5 4 20 20 C 1.39092 * 120.15946 * 0.56287 * 19 18 5 21 21 O 1.35594 * 119.91767 * 179.73919 * 20 19 18 22 22 C 1.34740 * 116.99324 * 5.79634 * 21 20 19 23 23 H 1.07994 * 120.00686 * 354.89428 * 22 21 20 24 24 C 1.38747 * 119.99511 * 174.89841 * 22 21 20 25 25 N 1.31493 * 120.00101 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99773 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47231 * 89.99776 * 26 24 22 28 28 H 1.48506 * 109.47129 * 209.99929 * 26 24 22 29 29 H 1.48504 * 109.47410 * 329.99805 * 26 24 22 30 30 H 1.09005 * 109.47154 * 299.99419 * 1 2 3 31 31 H 1.08994 * 109.47458 * 59.99968 * 1 2 3 32 32 H 1.09005 * 109.47353 * 180.02562 * 1 2 3 33 33 H 1.08009 * 120.07611 * 359.97438 * 4 3 2 34 34 H 1.08004 * 119.99985 * 218.22389 * 6 5 4 35 35 H 1.08999 * 109.33707 * 268.00704 * 8 7 6 36 36 H 1.08998 * 109.33386 * 27.68642 * 8 7 6 37 37 H 1.08004 * 120.04369 * 359.71887 * 11 10 9 38 38 H 1.08001 * 119.68362 * 180.02562 * 12 11 10 39 39 H 1.08006 * 119.87186 * 179.77100 * 13 12 11 40 40 H 1.08005 * 120.22449 * 179.97438 * 14 13 12 41 41 H 1.08008 * 120.00241 * 179.70448 * 18 5 4 42 42 H 1.07995 * 119.92130 * 180.29416 * 19 18 5 43 43 H 0.97006 * 119.99736 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2943 2.3690 0.0005 5 6 1.9336 3.6150 0.0000 6 6 1.1391 4.8500 0.0011 7 6 0.0001 4.9208 0.7272 8 6 -0.3802 3.8089 1.6734 9 8 -1.0883 4.3351 2.7947 10 6 -2.1273 5.1713 2.5589 11 6 -3.2473 5.1626 3.3748 12 6 -4.2927 6.0289 3.1193 13 6 -4.2346 6.9101 2.0516 14 6 -3.1280 6.9318 1.2276 15 6 -2.0695 6.0625 1.4764 16 6 -0.8667 6.0491 0.6145 17 8 -0.6271 6.9604 -0.1571 18 6 3.3331 3.6803 -0.0069 19 6 4.0759 2.5219 -0.0016 20 6 3.4408 1.2845 -0.0011 21 8 4.1776 0.1462 -0.0011 22 6 5.5127 0.2818 0.1196 23 1 5.9570 1.2661 0.1277 24 6 6.3167 -0.8432 0.2334 25 7 5.7758 -2.0416 0.2239 26 14 8.1676 -0.6551 0.4015 27 1 8.5268 -0.5582 1.8391 28 1 8.8415 -1.8346 -0.1987 29 1 8.6060 0.5768 -0.3024 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 0.2156 2.3140 0.0005 34 1 1.4642 5.7018 -0.5779 35 1 -1.0130 3.0913 1.1512 36 1 0.5225 3.3075 2.0224 37 1 -3.3027 4.4797 4.2098 38 1 -5.1637 6.0192 3.7580 39 1 -5.0605 7.5794 1.8609 40 1 -3.0834 7.6185 0.3952 41 1 3.8289 4.6398 -0.0122 42 1 5.1546 2.5737 -0.0021 43 1 6.3379 -2.8281 0.3038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013137346.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:40 Heat of formation + Delta-G solvation = -74.447334 kcal Electronic energy + Delta-G solvation = -29802.844055 eV Core-core repulsion = 25551.777357 eV Total energy + Delta-G solvation = -4251.066698 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.119 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.15837 -41.33577 -39.67620 -39.39283 -38.80908 -37.99094 -35.15625 -34.23787 -32.42984 -31.41727 -31.19348 -30.56044 -28.72456 -27.59240 -27.00172 -25.84375 -23.95712 -23.29481 -23.16591 -21.97135 -20.04806 -19.87393 -19.45180 -18.80555 -17.96036 -17.73508 -17.53520 -16.94258 -16.70635 -16.53403 -16.35864 -16.00225 -15.78038 -15.44875 -15.31873 -15.29669 -15.25453 -14.95191 -14.85102 -14.68643 -14.07385 -13.88397 -13.56298 -13.33606 -13.07489 -13.06628 -12.97090 -12.76377 -12.58915 -12.35909 -12.20458 -12.06817 -11.97736 -11.68379 -11.43460 -10.96097 -10.90379 -10.46787 -10.09482 -9.61499 -9.37961 -8.65978 -8.50764 -6.14472 -0.82527 -0.05483 0.31295 0.46553 0.81214 1.36602 1.45550 1.53925 1.80101 2.14924 2.25851 2.50464 2.70462 2.77929 2.96204 3.07831 3.28733 3.42866 3.65097 3.75975 3.89942 3.91320 4.13072 4.18144 4.21005 4.26589 4.31788 4.38731 4.39413 4.43195 4.50148 4.55191 4.58653 4.69241 4.84334 4.90997 4.92922 4.98558 5.09479 5.18451 5.32112 5.36723 5.40913 5.44710 5.56907 5.70654 5.84545 5.92801 6.27134 6.37549 6.54912 6.92248 7.70420 8.70848 Molecular weight = 352.12amu Principal moments of inertia in cm(-1) A = 0.020045 B = 0.002322 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.492686 B =12057.509820 C =12665.182615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.340 6.340 3 C 0.044 3.956 4 C -0.132 4.132 5 C -0.149 4.149 6 C 0.062 3.938 7 C -0.290 4.290 8 C 0.118 3.882 9 O -0.321 6.321 10 C 0.147 3.853 11 C -0.162 4.162 12 C -0.048 4.048 13 C -0.155 4.155 14 C -0.046 4.046 15 C -0.255 4.255 16 C 0.439 3.561 17 O -0.492 6.492 18 C -0.055 4.055 19 C -0.218 4.218 20 C 0.108 3.892 21 O -0.206 6.206 22 C -0.416 4.416 23 H 0.110 0.890 24 C -0.019 4.019 25 N -0.910 5.910 26 Si 1.020 2.980 27 H -0.263 1.263 28 H -0.273 1.273 29 H -0.249 1.249 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.111 0.889 33 H 0.155 0.845 34 H 0.146 0.854 35 H 0.086 0.914 36 H 0.120 0.880 37 H 0.154 0.846 38 H 0.171 0.829 39 H 0.161 0.839 40 H 0.134 0.866 41 H 0.153 0.847 42 H 0.138 0.862 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.520 14.910 4.541 24.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.255 6.255 3 C -0.001 4.001 4 C -0.150 4.150 5 C -0.150 4.150 6 C 0.043 3.957 7 C -0.292 4.292 8 C 0.044 3.956 9 O -0.236 6.236 10 C 0.101 3.899 11 C -0.181 4.181 12 C -0.066 4.066 13 C -0.173 4.173 14 C -0.064 4.064 15 C -0.257 4.257 16 C 0.325 3.675 17 O -0.374 6.374 18 C -0.073 4.073 19 C -0.237 4.237 20 C 0.056 3.944 21 O -0.111 6.111 22 C -0.491 4.491 23 H 0.127 0.873 24 C -0.218 4.218 25 N -0.546 5.546 26 Si 0.838 3.162 27 H -0.188 1.188 28 H -0.198 1.198 29 H -0.173 1.173 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.130 0.870 33 H 0.172 0.828 34 H 0.163 0.837 35 H 0.104 0.896 36 H 0.137 0.863 37 H 0.171 0.829 38 H 0.189 0.811 39 H 0.179 0.821 40 H 0.152 0.848 41 H 0.171 0.829 42 H 0.155 0.845 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.239 14.609 4.324 23.765 hybrid contribution 0.996 -0.313 -0.362 1.105 sum -17.243 14.296 3.962 22.747 Atomic orbital electron populations 1.23321 0.77107 1.05247 1.02045 1.86211 1.22899 1.26605 1.89762 1.18280 0.88959 0.85744 1.07150 1.21264 0.99905 0.89741 1.04134 1.18465 0.93153 0.91660 1.11694 1.22358 0.88920 0.94812 0.89585 1.21898 1.00374 1.00840 1.06057 1.22070 0.96788 0.92264 0.84437 1.85837 1.42645 1.60563 1.34509 1.19430 0.87651 0.88466 0.94325 1.21048 0.90965 1.03599 1.02459 1.21683 0.97811 0.91360 0.95746 1.21519 0.98764 1.01289 0.95739 1.21290 0.91818 0.94629 0.98641 1.20743 0.99477 1.03586 1.01848 1.19156 0.84659 0.84385 0.79326 1.90625 1.74037 1.37734 1.35034 1.21197 0.92253 0.98059 0.95807 1.21016 1.01173 0.90719 1.10799 1.19598 0.89606 0.88028 0.97217 1.83968 1.20286 1.27794 1.79038 1.21987 0.78794 0.95927 1.52433 0.87258 1.26661 1.06086 0.93549 0.95541 1.70182 1.38615 0.98842 1.47000 0.84572 0.73175 0.79073 0.79336 1.18792 1.19767 1.17251 0.91407 0.91742 0.87048 0.82796 0.83653 0.89630 0.86275 0.82872 0.81130 0.82126 0.84767 0.82907 0.84479 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.81 113.37 1.11 1.57 16 2 O -0.34 -14.17 10.28 -78.97 -0.81 -14.98 16 3 C 0.04 1.80 6.70 22.57 0.15 1.95 16 4 C -0.13 -4.17 6.74 22.66 0.15 -4.02 16 5 C -0.15 -4.45 5.12 -20.14 -0.10 -4.55 16 6 C 0.06 1.61 9.33 23.84 0.22 1.84 16 7 C -0.29 -7.63 5.69 -19.38 -0.11 -7.74 16 8 C 0.12 2.85 5.18 71.29 0.37 3.21 16 9 O -0.32 -8.09 10.31 -87.33 -0.90 -8.99 16 10 C 0.15 3.35 6.45 22.86 0.15 3.50 16 11 C -0.16 -2.64 10.00 22.33 0.22 -2.42 16 12 C -0.05 -0.55 10.02 22.33 0.22 -0.32 16 13 C -0.16 -2.00 10.03 22.29 0.22 -1.77 16 14 C -0.05 -0.89 9.67 22.44 0.22 -0.67 16 15 C -0.25 -6.21 5.82 -19.95 -0.12 -6.33 16 16 C 0.44 12.36 6.93 25.98 0.18 12.54 16 17 O -0.49 -15.79 16.71 -4.64 -0.08 -15.87 16 18 C -0.06 -1.74 9.78 22.57 0.22 -1.52 16 19 C -0.22 -8.72 9.14 22.33 0.20 -8.52 16 20 C 0.11 5.17 6.67 22.82 0.15 5.33 16 21 O -0.21 -12.07 9.52 -6.14 -0.06 -12.13 16 22 C -0.42 -23.21 9.48 67.94 0.64 -22.56 16 23 H 0.11 5.45 5.18 -2.91 -0.02 5.44 16 24 C -0.02 -1.06 5.49 84.87 0.47 -0.59 16 25 N -0.91 -54.67 13.67 21.63 0.30 -54.38 16 26 Si 1.02 41.19 29.55 68.60 2.03 43.21 16 27 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 28 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 29 H -0.25 -9.22 7.11 99.48 0.71 -8.52 16 30 H 0.07 1.48 7.66 -2.38 -0.02 1.47 16 31 H 0.06 1.46 7.66 -2.39 -0.02 1.44 16 32 H 0.11 2.52 8.14 -2.38 -0.02 2.50 16 33 H 0.15 3.89 4.06 -2.91 -0.01 3.88 16 34 H 0.15 3.54 7.62 -2.91 -0.02 3.52 16 35 H 0.09 1.74 6.96 -2.39 -0.02 1.72 16 36 H 0.12 3.04 6.37 -2.39 -0.02 3.02 16 37 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.17 0.65 8.06 -2.91 -0.02 0.62 16 39 H 0.16 1.05 8.06 -2.91 -0.02 1.02 16 40 H 0.13 2.52 7.87 -2.91 -0.02 2.49 16 41 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 42 H 0.14 5.45 5.62 -2.91 -0.02 5.43 16 43 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 Total: -1.00 -75.79 367.13 6.14 -69.65 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 1.08 Total: 24.56 kcal Atomic # 6 Polarization: -35.66 SS G_CDS: 4.58 Total: -31.08 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.30 Total: -54.38 kcal Atomic # 8 Polarization: -50.12 SS G_CDS: -1.85 Total: -51.97 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.21 kcal Total: -75.79 6.14 -69.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013137346.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.797 kcal (2) G-P(sol) polarization free energy of solvation -75.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds