Wall clock time and date at job start Tue Mar 31 2020 06:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46869 * 2 1 4 4 C 1.53004 * 109.46775 * 240.00544 * 2 1 3 5 5 C 1.50694 * 109.47417 * 120.00564 * 2 1 3 6 6 N 1.26872 * 118.79713 * 0.17869 * 5 2 1 7 7 N 1.37807 * 127.54161 * 179.90802 * 6 5 2 8 8 C 1.46500 * 117.00150 * 135.34008 * 7 6 5 9 9 C 1.52997 * 109.47473 * 269.74419 * 8 7 6 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47094 * 90.00289 * 14 12 10 16 16 H 1.48505 * 109.47195 * 210.00171 * 14 12 10 17 17 H 1.48493 * 109.47449 * 330.00136 * 14 12 10 18 18 C 1.33635 * 126.00101 * 315.05971 * 7 6 5 19 19 O 1.21669 * 119.25208 * 187.88169 * 18 7 6 20 20 C 1.47021 * 121.50000 * 7.89992 * 18 7 6 21 21 C 1.35620 * 127.03311 * 214.41856 * 20 18 7 22 22 C 1.41676 * 107.70948 * 181.34377 * 21 20 18 23 23 C 1.40090 * 133.30090 * 179.78119 * 22 21 20 24 24 C 1.36435 * 119.85092 * 180.43430 * 23 22 21 25 25 C 1.38928 * 120.59818 * 359.97438 * 24 23 22 26 26 C 1.37641 * 120.65654 * 359.84535 * 25 24 23 27 27 C 1.39227 * 119.86309 * 0.02743 * 26 25 24 28 28 N 1.37155 * 133.33215 * 180.76097 * 27 26 25 29 29 C 1.46826 * 127.11300 * 2.47300 * 28 27 26 30 30 H 1.09005 * 109.46899 * 299.99558 * 1 2 3 31 31 H 1.08995 * 109.47580 * 59.99474 * 1 2 3 32 32 H 1.08998 * 109.46978 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46683 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.47448 * 300.00606 * 3 2 1 35 35 H 1.09005 * 109.46999 * 60.00503 * 3 2 1 36 36 H 1.08998 * 109.46997 * 299.99534 * 4 2 1 37 37 H 1.09003 * 109.47011 * 59.99977 * 4 2 1 38 38 H 1.09000 * 109.47157 * 179.97438 * 4 2 1 39 39 H 1.09002 * 109.47129 * 149.74162 * 8 7 6 40 40 H 1.08998 * 109.46845 * 29.74969 * 8 7 6 41 41 H 1.09002 * 109.47153 * 59.99757 * 9 8 7 42 42 H 1.09001 * 109.46832 * 299.99948 * 9 8 7 43 43 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 44 44 H 1.07993 * 126.14417 * 1.33364 * 21 20 18 45 45 H 1.07994 * 120.07789 * 0.42477 * 23 22 21 46 46 H 1.08001 * 119.70200 * 179.97438 * 24 23 22 47 47 H 1.08000 * 119.67353 * 179.81783 * 25 24 23 48 48 H 1.07994 * 120.06441 * 180.02562 * 26 25 24 49 49 H 1.08999 * 109.72869 * 241.19633 * 29 28 27 50 50 H 1.08997 * 109.73605 * 1.83381 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0324 -0.7105 1.2303 6 7 1.1879 -1.1870 2.0485 7 7 1.4445 -1.8662 3.2198 8 6 0.6545 -1.4886 4.3944 9 6 1.3769 -0.3779 5.1594 10 6 0.5640 0.0110 6.3673 11 1 -0.3740 -0.4848 6.5693 12 6 1.0181 0.9990 7.2150 13 7 2.1605 1.6024 6.9692 14 14 0.0107 1.4804 8.7126 15 1 0.4164 0.6451 9.8714 16 1 0.2461 2.9124 9.0280 17 1 -1.4311 1.2666 8.4289 18 6 2.3440 -2.8412 3.3816 19 8 2.3710 -3.4570 4.4306 20 6 3.3018 -3.1864 2.3210 21 6 3.7843 -4.4190 2.0257 22 6 4.7006 -4.2778 0.9544 23 6 5.4951 -5.1867 0.2436 24 6 6.3061 -4.7406 -0.7587 25 6 6.3521 -3.3905 -1.0832 26 6 5.5785 -2.4783 -0.4021 27 6 4.7405 -2.9084 0.6232 28 7 3.8624 -2.2616 1.4549 29 6 3.5195 -0.8340 1.4437 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 1.6766 -1.7488 -1.2494 37 1 1.6765 -0.2072 -2.1393 38 1 3.1299 -0.7208 -1.2497 39 1 0.5310 -2.3557 5.0433 40 1 -0.3245 -1.1320 4.0744 41 1 1.5005 0.4892 4.5105 42 1 2.3560 -0.7346 5.4794 43 1 2.4798 2.2977 7.5654 44 1 3.5179 -5.3422 2.5187 45 1 5.4658 -6.2381 0.4885 46 1 6.9179 -5.4433 -1.3049 47 1 7.0017 -3.0533 -1.8774 48 1 5.6214 -1.4311 -0.6625 49 1 3.7929 -0.3824 2.3973 50 1 4.0511 -0.3342 0.6340 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013564668.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:08 Heat of formation + Delta-G solvation = 66.253962 kcal Electronic energy + Delta-G solvation = -32295.491178 eV Core-core repulsion = 28289.058775 eV Total energy + Delta-G solvation = -4006.432403 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 353.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.96143 -39.77900 -38.64558 -36.97563 -36.00024 -33.71264 -33.15800 -32.01070 -30.46663 -29.99346 -28.86527 -27.83055 -27.46945 -26.37717 -25.40534 -23.86495 -23.04577 -21.74603 -21.43787 -20.43830 -19.88967 -18.67971 -17.36443 -16.94254 -16.62822 -16.08576 -15.70587 -15.58508 -15.38941 -14.73423 -14.51257 -14.44119 -14.30293 -14.22019 -13.89364 -13.87004 -13.49936 -13.14618 -12.87104 -12.73335 -12.52170 -12.43266 -12.23941 -11.99683 -11.86774 -11.78816 -11.64651 -11.47603 -11.30700 -11.06805 -11.05668 -10.97991 -10.93643 -10.71625 -10.46039 -10.05397 -9.98211 -9.92278 -9.54479 -9.25913 -8.43389 -8.31626 -8.22400 -7.77710 -6.08461 -4.11818 0.71613 1.48043 1.65216 2.06486 2.55049 2.59541 3.29429 3.30226 3.35353 3.38830 3.77480 3.96920 4.03536 4.40723 4.45644 4.52490 4.66201 4.75751 4.78076 4.84219 4.95279 5.12764 5.19354 5.25094 5.28410 5.30052 5.39436 5.47000 5.53930 5.57038 5.59435 5.71291 5.79178 5.82353 5.87415 5.88243 5.94407 6.02236 6.14936 6.22946 6.30804 6.38087 6.38632 6.44959 6.55352 6.58963 6.59526 6.68611 6.89610 7.07068 7.51768 7.59342 7.88112 8.03398 8.27235 8.57995 8.93232 9.52465 11.03230 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.011591 B = 0.003349 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.034453 B = 8358.701211 C = 9666.128918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.007 4.007 3 C -0.142 4.142 4 C -0.138 4.138 5 C 0.121 3.879 6 N -0.235 5.235 7 N -0.434 5.434 8 C 0.122 3.878 9 C 0.014 3.986 10 C -0.519 4.519 11 H 0.060 0.940 12 C 0.060 3.940 13 N -0.894 5.894 14 Si 0.897 3.103 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.272 1.272 18 C 0.562 3.438 19 O -0.504 6.504 20 C 0.021 3.979 21 C -0.117 4.117 22 C -0.116 4.116 23 C -0.060 4.060 24 C -0.153 4.153 25 C -0.091 4.091 26 C -0.130 4.130 27 C 0.117 3.883 28 N -0.463 5.463 29 C 0.105 3.895 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.015 0.985 42 H 0.018 0.982 43 H 0.262 0.738 44 H 0.154 0.846 45 H 0.124 0.876 46 H 0.122 0.878 47 H 0.125 0.875 48 H 0.120 0.880 49 H 0.103 0.897 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.396 -5.686 -22.409 23.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.010 4.010 3 C -0.201 4.201 4 C -0.197 4.197 5 C -0.074 4.074 6 N -0.038 5.038 7 N -0.252 5.252 8 C 0.003 3.997 9 C -0.024 4.024 10 C -0.558 4.558 11 H 0.078 0.922 12 C -0.142 4.142 13 N -0.533 5.533 14 Si 0.725 3.275 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.197 1.197 18 C 0.348 3.652 19 O -0.376 6.376 20 C -0.087 4.087 21 C -0.143 4.143 22 C -0.121 4.121 23 C -0.078 4.078 24 C -0.172 4.172 25 C -0.111 4.111 26 C -0.150 4.150 27 C 0.008 3.992 28 N -0.147 5.147 29 C -0.019 4.019 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.034 0.966 42 H 0.036 0.964 43 H 0.071 0.929 44 H 0.172 0.828 45 H 0.142 0.858 46 H 0.140 0.860 47 H 0.143 0.857 48 H 0.138 0.862 49 H 0.121 0.879 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.552 -5.730 -21.367 22.585 hybrid contribution 0.581 0.400 0.961 1.192 sum 5.133 -5.331 -20.406 21.706 Atomic orbital electron populations 1.21728 0.92150 1.02793 1.02240 1.19539 0.97529 0.94643 0.89258 1.21916 1.01083 0.93733 1.03334 1.21886 1.01040 1.00614 0.96114 1.25096 0.90597 0.94357 0.97332 1.71913 1.31426 1.05694 0.94776 1.48565 1.36646 1.31699 1.08305 1.22227 0.94500 1.00865 0.82109 1.19418 0.96290 0.91922 0.94727 1.21001 1.06473 1.19828 1.08476 0.92188 1.24994 0.95091 0.96073 0.98053 1.69966 1.20049 1.25279 1.37958 0.86506 0.80490 0.77621 0.82900 1.20506 1.21176 1.19685 1.17423 0.79932 0.81582 0.86221 1.90891 1.69653 1.51014 1.26026 1.20523 1.02173 0.90173 0.95807 1.20719 0.99028 0.96118 0.98412 1.18198 1.01618 0.92484 0.99765 1.20374 0.94443 0.98597 0.94423 1.20588 1.01387 0.95767 0.99441 1.20812 0.98266 0.92939 0.99071 1.20008 0.98579 0.99858 0.96568 1.18251 0.94738 0.91522 0.94688 1.44410 1.35429 1.06728 1.28177 1.21682 0.94766 0.79566 1.05853 0.91265 0.92420 0.92100 0.92371 0.91167 0.91316 0.92342 0.91207 0.92514 0.89115 0.90130 0.96629 0.96398 0.92890 0.82812 0.85839 0.86010 0.85680 0.86207 0.87858 0.86667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 7.67 37.16 0.28 -1.12 16 2 C -0.01 -0.07 0.80 -155.66 -0.12 -0.20 16 3 C -0.14 -1.25 8.29 37.16 0.31 -0.94 16 4 C -0.14 -1.18 8.29 37.16 0.31 -0.87 16 5 C 0.12 1.69 5.38 -79.35 -0.43 1.26 16 6 N -0.24 -4.03 9.11 34.51 0.31 -3.71 16 7 N -0.43 -8.71 3.23 -61.80 -0.20 -8.91 16 8 C 0.12 2.72 5.41 -4.04 -0.02 2.69 16 9 C 0.01 0.38 5.28 -27.88 -0.15 0.23 16 10 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 11 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 14 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 C 0.56 11.61 7.33 -13.21 -0.10 11.51 16 19 O -0.50 -11.85 16.16 5.22 0.08 -11.77 16 20 C 0.02 0.38 6.37 -82.20 -0.52 -0.15 16 21 C -0.12 -1.82 10.75 -39.21 -0.42 -2.24 16 22 C -0.12 -1.60 6.16 -106.86 -0.66 -2.26 16 23 C -0.06 -0.66 10.06 -39.54 -0.40 -1.05 16 24 C -0.15 -1.42 9.97 -39.98 -0.40 -1.82 16 25 C -0.09 -0.83 10.01 -39.54 -0.40 -1.22 16 26 C -0.13 -1.36 9.89 -39.43 -0.39 -1.75 16 27 C 0.12 1.58 6.86 -84.09 -0.58 1.00 16 28 N -0.46 -6.93 2.96 -111.40 -0.33 -7.26 16 29 C 0.11 1.41 5.79 -5.00 -0.03 1.38 16 30 H 0.07 0.85 8.04 -51.93 -0.42 0.43 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.71 8.03 -51.93 -0.42 0.29 16 33 H 0.06 0.44 7.06 -51.93 -0.37 0.08 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.44 7.14 -51.93 -0.37 0.07 16 39 H 0.09 2.09 7.04 -51.93 -0.37 1.72 16 40 H 0.08 1.69 8.12 -51.93 -0.42 1.27 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.15 2.18 8.06 -52.49 -0.42 1.76 16 45 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 46 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 47 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 48 H 0.12 0.99 7.76 -52.49 -0.41 0.58 16 49 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 50 H 0.12 1.12 5.72 -51.93 -0.30 0.82 16 LS Contribution 406.81 15.07 6.13 6.13 Total: -1.00 -33.94 406.81 -10.08 -44.02 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -7.68 Total: -0.07 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -4.12 Total: -9.00 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.52 Total: -46.03 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.08 Total: -11.77 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.94 -10.08 -44.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013564668.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.277 kcal (2) G-P(sol) polarization free energy of solvation -33.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds