Wall clock time and date at job start Tue Mar 31 2020 05:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29371 * 1 3 3 Si 1.86798 * 120.00235 * 2 1 4 4 H 1.48498 * 109.47278 * 240.00096 * 3 2 1 5 5 H 1.48503 * 109.46724 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47292 * 120.00019 * 3 2 1 7 7 C 1.46626 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00008 * 179.97438 * 7 2 1 9 9 O 1.22335 * 120.00277 * 359.97438 * 7 2 1 10 10 C 1.35635 * 117.00327 * 174.89661 * 9 7 2 11 11 C 1.39335 * 119.72575 * 185.86245 * 10 9 7 12 12 C 1.36618 * 120.13571 * 179.97438 * 11 10 9 13 13 C 1.39543 * 119.90737 * 359.97438 * 12 11 10 14 14 C 1.40373 * 120.50656 * 0.02562 * 13 12 11 15 15 C 1.38642 * 119.72531 * 5.83445 * 10 9 7 16 16 O 1.35090 * 109.74096 * 179.97438 * 14 13 12 17 17 C 1.35356 * 111.85342 * 359.97438 * 16 14 13 18 18 C 1.35651 * 126.22577 * 179.97438 * 17 16 14 19 19 C 1.46977 * 119.99907 * 4.87512 * 18 17 16 20 20 C 1.39975 * 120.17906 * 354.13674 * 19 18 17 21 21 C 1.37834 * 119.81436 * 180.02562 * 20 19 18 22 22 C 1.38443 * 120.18301 * 0.02562 * 21 20 19 23 23 C 1.38409 * 120.36983 * 359.97438 * 22 21 20 24 24 N 1.48013 * 119.91085 * 180.02562 * 23 22 21 25 25 O 1.31699 * 119.99868 * 359.97438 * 24 23 22 26 26 O 1.31702 * 119.99927 * 179.97438 * 24 23 22 27 27 C 1.37880 * 120.17834 * 359.76381 * 23 22 21 28 28 C 1.47164 * 107.54846 * 0.24612 * 17 16 14 29 29 O 1.21854 * 127.75401 * 179.73959 * 28 17 16 30 30 H 0.96992 * 120.00210 * 359.97438 * 1 2 3 31 31 H 1.08002 * 119.93216 * 359.97438 * 11 10 9 32 32 H 1.07992 * 120.04436 * 180.02562 * 12 11 10 33 33 H 1.08003 * 120.00608 * 0.02562 * 15 10 9 34 34 H 1.07996 * 120.00261 * 185.14535 * 18 17 16 35 35 H 1.08002 * 120.09291 * 0.02562 * 20 19 18 36 36 H 1.08004 * 119.91087 * 179.97438 * 21 20 19 37 37 H 1.08003 * 119.81696 * 180.02562 * 22 21 20 38 38 H 1.08000 * 120.09388 * 180.27643 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2937 0.0000 0.0000 3 14 2.2278 1.6177 0.0000 4 1 3.0815 1.6964 -1.2125 5 1 1.2627 2.7464 0.0006 6 1 3.0815 1.6963 1.2124 7 6 2.0268 -1.2698 -0.0006 8 1 3.1069 -1.2698 -0.0010 9 8 1.4152 -2.3293 -0.0006 10 6 2.1497 -3.4644 -0.1086 11 6 1.5066 -4.6938 -0.2379 12 6 2.2382 -5.8423 -0.3478 13 6 3.6323 -5.7835 -0.3311 14 6 4.2921 -4.5513 -0.2014 15 6 3.5341 -3.3918 -0.0901 16 8 5.6288 -4.7462 -0.2102 17 6 5.9461 -6.0557 -0.3392 18 6 7.1978 -6.5768 -0.3819 19 6 8.3638 -5.7058 -0.1769 20 6 8.1958 -4.3211 -0.0596 21 6 9.2946 -3.5113 0.1320 22 6 10.5617 -4.0638 0.2079 23 6 10.7366 -5.4320 0.0929 24 7 12.0959 -6.0119 0.1761 25 8 13.1369 -5.2262 0.3589 26 8 12.2642 -7.3136 0.0674 27 6 9.6475 -6.2567 -0.0937 28 6 4.6862 -6.8106 -0.4312 29 8 4.5453 -8.0142 -0.5595 30 1 -0.4850 0.8400 0.0004 31 1 0.4276 -4.7388 -0.2512 32 1 1.7383 -6.7942 -0.4484 33 1 4.0234 -2.4343 0.0105 34 1 7.3378 -7.6308 -0.5709 35 1 7.2080 -3.8885 -0.1190 36 1 9.1668 -2.4427 0.2223 37 1 11.4185 -3.4237 0.3586 38 1 9.7851 -7.3245 -0.1788 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013769752.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:49 Heat of formation + Delta-G solvation = 52.098434 kcal Electronic energy + Delta-G solvation = -28656.786955 eV Core-core repulsion = 24209.948687 eV Total energy + Delta-G solvation = -4446.838267 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 353.082 amu Computer time = 3.00 seconds Orbital eigenvalues (eV) -41.88583 -40.71827 -40.33127 -38.50304 -37.74905 -36.51410 -34.67637 -33.87540 -33.42773 -32.07359 -30.58368 -29.81156 -29.42879 -26.93833 -26.49182 -24.89601 -23.09771 -22.69060 -22.25514 -20.81687 -20.30922 -19.12772 -18.46810 -18.28574 -18.11571 -16.88145 -16.60545 -16.22027 -16.07798 -16.05266 -15.62152 -15.14929 -14.95524 -14.88821 -14.59622 -14.32237 -14.18110 -13.57777 -13.49602 -13.37582 -13.36351 -13.06270 -12.55637 -12.32288 -12.06390 -11.94557 -11.70811 -11.55588 -11.34213 -11.26726 -11.11165 -10.90379 -10.85738 -10.54409 -9.96079 -9.87838 -9.65159 -9.32094 -8.77560 -7.96364 -7.76935 -7.54472 -4.25403 -0.92415 -0.10981 0.83105 0.87575 1.04746 1.88083 2.18383 2.63006 2.67446 2.69301 2.81360 2.98777 3.30936 3.32049 3.75317 3.99629 4.07985 4.25086 4.43731 4.47170 4.53294 4.60431 4.68246 4.79464 5.17644 5.25956 5.30078 5.35458 5.40332 5.54175 5.58209 5.77700 5.83957 6.00972 6.05813 6.09507 6.17442 6.29536 6.47834 6.52518 6.76718 6.80927 7.06208 7.09334 7.24050 7.57683 7.83215 7.87378 9.14995 9.61066 Molecular weight = 353.08amu Principal moments of inertia in cm(-1) A = 0.011285 B = 0.002508 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.657365 B =11160.150061 C =13618.787777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.045 3.955 3 Si 0.954 3.046 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.373 4.373 8 H 0.106 0.894 9 O -0.062 6.062 10 C 0.111 3.889 11 C -0.206 4.206 12 C 0.022 3.978 13 C -0.389 4.389 14 C 0.172 3.828 15 C -0.255 4.255 16 O -0.226 6.226 17 C 0.030 3.970 18 C -0.105 4.105 19 C -0.041 4.041 20 C -0.056 4.056 21 C -0.113 4.113 22 C -0.058 4.058 23 C -0.006 4.006 24 N -0.016 5.016 25 O -0.174 6.174 26 O -0.172 6.172 27 C -0.044 4.044 28 C 0.403 3.597 29 O -0.463 6.463 30 H 0.299 0.701 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.133 0.867 34 H 0.165 0.835 35 H 0.168 0.832 36 H 0.152 0.848 37 H 0.154 0.846 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.904 -0.462 -0.043 9.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.176 4.176 3 Si 0.775 3.225 4 H -0.180 1.180 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.450 4.450 8 H 0.123 0.877 9 O 0.048 5.952 10 C 0.050 3.950 11 C -0.225 4.225 12 C 0.003 3.997 13 C -0.392 4.392 14 C 0.128 3.872 15 C -0.275 4.275 16 O -0.135 6.135 17 C -0.016 4.016 18 C -0.124 4.124 19 C -0.042 4.042 20 C -0.074 4.074 21 C -0.131 4.131 22 C -0.078 4.078 23 C -0.092 4.092 24 N 0.463 4.537 25 O -0.368 6.368 26 O -0.366 6.366 27 C -0.064 4.064 28 C 0.289 3.711 29 O -0.345 6.345 30 H 0.112 0.888 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.151 0.849 34 H 0.182 0.818 35 H 0.185 0.815 36 H 0.170 0.830 37 H 0.172 0.828 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 8.830 -0.318 -0.091 8.836 hybrid contribution 0.897 0.661 0.090 1.118 sum 9.727 0.343 -0.001 9.733 Atomic orbital electron populations 1.68890 1.08321 1.31726 1.30757 1.27313 0.95451 0.99811 0.95003 0.85520 0.79399 0.76813 0.80768 1.18042 1.19235 1.18084 1.21445 0.94113 0.82466 1.46953 0.87737 1.80299 1.37983 1.12513 1.64410 1.18728 0.88514 0.86372 1.01408 1.19618 0.99461 0.89547 1.13922 1.19621 0.90476 0.96991 0.92648 1.19886 0.95043 0.93531 1.30767 1.19088 0.79455 0.94991 0.93662 1.19352 0.92063 0.95523 1.20569 1.84174 1.23252 1.23951 1.82127 1.22283 0.96141 0.83625 0.99502 1.21392 0.86349 0.99611 1.05077 1.18844 0.91729 0.93357 1.00292 1.22689 1.01470 0.92634 0.90586 1.21239 0.90368 1.01528 0.99985 1.21239 0.99888 0.91912 0.94715 1.20196 0.79729 0.94011 1.15260 1.50499 1.04302 1.02936 0.95916 1.96269 1.29473 1.56882 1.54175 1.96282 1.94253 0.90713 1.55348 1.21224 0.89611 1.01449 0.94095 1.20398 0.87483 0.88293 0.74877 1.90636 1.86915 1.14857 1.42136 0.88838 0.85908 0.86334 0.84950 0.81814 0.81488 0.83004 0.82817 0.82379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.13 13.66 55.99 0.76 -16.36 16 2 C 0.05 0.94 5.69 -15.21 -0.09 0.85 16 3 Si 0.95 15.19 29.64 -169.99 -5.04 10.15 16 4 H -0.26 -4.01 7.11 56.52 0.40 -3.60 16 5 H -0.27 -4.13 7.11 56.52 0.40 -3.73 16 6 H -0.26 -4.00 7.11 56.52 0.40 -3.60 16 7 C -0.37 -8.15 9.47 34.11 0.32 -7.82 16 8 H 0.11 2.10 4.99 -52.48 -0.26 1.83 16 9 O -0.06 -1.43 9.27 21.24 0.20 -1.24 16 10 C 0.11 2.31 6.59 -39.02 -0.26 2.06 16 11 C -0.21 -3.94 9.93 -39.76 -0.39 -4.34 16 12 C 0.02 0.40 10.04 -39.68 -0.40 0.00 16 13 C -0.39 -7.38 6.34 -104.83 -0.66 -8.05 16 14 C 0.17 3.17 7.28 -38.51 -0.28 2.89 16 15 C -0.26 -4.93 9.14 -39.16 -0.36 -5.29 16 16 O -0.23 -3.59 7.03 0.50 0.00 -3.59 16 17 C 0.03 0.46 6.86 -36.88 -0.25 0.21 16 18 C -0.10 -1.27 9.90 -36.97 -0.37 -1.64 16 19 C -0.04 -0.45 5.86 -105.07 -0.62 -1.07 16 20 C -0.06 -0.59 9.31 -39.08 -0.36 -0.95 16 21 C -0.11 -0.95 10.03 -39.65 -0.40 -1.35 16 22 C -0.06 -0.53 9.58 -39.44 -0.38 -0.91 16 23 C -0.01 -0.07 6.88 -80.02 -0.55 -0.62 16 24 N -0.02 -0.22 4.98 33.93 0.17 -0.05 16 25 O -0.17 -2.43 19.14 -31.57 -0.60 -3.04 16 26 O -0.17 -2.45 19.14 -31.57 -0.60 -3.05 16 27 C -0.04 -0.46 9.33 -39.08 -0.36 -0.83 16 28 C 0.40 7.28 7.81 -32.18 -0.25 7.03 16 29 O -0.46 -9.05 18.06 5.05 0.09 -8.96 16 30 H 0.30 5.83 8.26 -40.82 -0.34 5.49 16 31 H 0.12 2.17 8.06 -52.49 -0.42 1.74 16 32 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 33 H 0.13 2.40 5.65 -52.48 -0.30 2.11 16 34 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.17 1.91 4.75 -52.53 -0.25 1.66 16 36 H 0.15 0.89 8.06 -52.48 -0.42 0.46 16 37 H 0.15 1.17 7.56 -52.48 -0.40 0.77 16 38 H 0.16 1.43 7.57 -52.49 -0.40 1.04 16 LS Contribution 353.28 15.07 5.32 5.32 Total: -1.00 -25.94 353.28 -7.78 -33.72 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -2.43 Total: 6.94 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -5.66 Total: -19.85 kcal Atomic # 7 Polarization: -17.34 SS G_CDS: 0.93 Total: -16.41 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.92 Total: -19.88 kcal Atomic # 14 Polarization: 15.19 SS G_CDS: -5.04 Total: 10.15 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -25.94 -7.78 -33.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013769752.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.818 kcal (2) G-P(sol) polarization free energy of solvation -25.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.00 seconds