Wall clock time and date at job start Tue Mar 31 2020 04:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31426 * 1 3 3 Si 1.86802 * 120.00169 * 2 1 4 4 H 1.48499 * 109.47169 * 270.00103 * 3 2 1 5 5 H 1.48504 * 109.46991 * 30.00130 * 3 2 1 6 6 H 1.48495 * 109.47234 * 149.99805 * 3 2 1 7 7 C 1.38793 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00208 * 179.97438 * 7 2 1 9 9 O 1.34863 * 119.99972 * 0.02562 * 7 2 1 10 10 C 1.34786 * 117.00183 * 179.97438 * 9 7 2 11 11 O 1.21563 * 120.00128 * 359.97438 * 10 9 7 12 12 C 1.47236 * 120.00323 * 179.97438 * 10 9 7 13 13 C 1.40080 * 120.61390 * 5.89362 * 12 10 9 14 14 C 1.38294 * 118.35722 * 180.02562 * 13 12 10 15 15 C 1.38422 * 119.51934 * 359.97438 * 14 13 12 16 16 N 1.31836 * 121.23926 * 0.02562 * 15 14 13 17 17 C 1.32427 * 121.78313 * 359.97438 * 16 15 14 18 18 N 1.38333 * 119.82904 * 180.02562 * 17 16 15 19 19 C 1.39773 * 120.00325 * 5.65376 * 18 17 16 20 20 C 1.38925 * 120.07203 * 34.82303 * 19 18 17 21 21 C 1.38085 * 119.92227 * 179.79028 * 20 19 18 22 22 C 1.38311 * 120.07500 * 0.48991 * 21 20 19 23 23 C 1.38263 * 120.14860 * 359.74147 * 22 21 20 24 24 C 1.50702 * 119.96325 * 179.97438 * 23 22 21 25 25 F 1.39897 * 109.47304 * 270.02228 * 24 23 22 26 26 F 1.39902 * 109.46814 * 30.02429 * 24 23 22 27 27 F 1.39898 * 109.47072 * 150.02160 * 24 23 22 28 28 C 1.38122 * 120.07334 * 0.02738 * 23 22 21 29 29 H 0.96997 * 119.99709 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.81898 * 359.97438 * 13 12 10 31 31 H 1.08000 * 120.24077 * 179.97438 * 14 13 12 32 32 H 1.08004 * 119.37529 * 179.72571 * 15 14 13 33 33 H 0.97008 * 119.99435 * 185.65493 * 18 17 16 34 34 H 1.07999 * 120.04090 * 0.02562 * 20 19 18 35 35 H 1.08006 * 119.96373 * 180.20886 * 21 20 19 36 36 H 1.07996 * 119.92690 * 179.76644 * 22 21 20 37 37 H 1.08003 * 120.03600 * 179.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.4958 2.0464 -1.4001 5 1 1.4458 2.6527 0.7001 6 1 3.5458 1.4402 0.7000 7 6 2.0082 -1.2020 0.0005 8 1 3.0882 -1.2020 0.0001 9 8 1.3339 -2.3699 0.0005 10 6 2.0680 -3.5004 0.0005 11 8 3.2820 -3.4368 0.0001 12 6 1.3996 -4.8123 0.0011 13 6 0.0072 -4.9035 -0.1221 14 6 -0.5719 -6.1594 -0.1155 15 6 0.2309 -7.2799 0.0108 16 7 1.5400 -7.1738 0.1257 17 6 2.1470 -5.9968 0.1254 18 7 3.5234 -5.9325 0.2479 19 6 4.2804 -7.1075 0.2527 20 6 3.8912 -8.1895 -0.5270 21 6 4.6437 -9.3473 -0.5232 22 6 5.7781 -9.4341 0.2633 23 6 6.1655 -8.3608 1.0441 24 6 7.4019 -8.4601 1.9000 25 9 7.0568 -8.9544 3.1624 26 9 8.3194 -9.3258 1.2950 27 9 7.9774 -7.1924 2.0369 28 6 5.4200 -7.1980 1.0414 29 1 -0.4849 0.8400 -0.0004 30 1 -0.5990 -4.0151 -0.2191 31 1 -1.6427 -6.2651 -0.2082 32 1 -0.2242 -8.2594 0.0202 33 1 3.9632 -5.0718 0.3305 34 1 3.0032 -8.1238 -1.1382 35 1 4.3436 -10.1876 -1.1317 36 1 6.3627 -10.3421 0.2673 37 1 5.7230 -6.3602 1.6518 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000016183241.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:45 Heat of formation + Delta-G solvation = -149.954445 kcal Electronic energy + Delta-G solvation = -29881.118232 eV Core-core repulsion = 24981.380216 eV Total energy + Delta-G solvation = -4899.738016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 352.082 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.24334 -47.76142 -47.70219 -40.71479 -39.36177 -38.69155 -36.06652 -35.11117 -32.57837 -32.18963 -31.82747 -31.03836 -28.63009 -26.15194 -25.83912 -24.19339 -23.34532 -22.53261 -21.36420 -20.75654 -18.66712 -18.57009 -18.47479 -17.99852 -17.48234 -17.23947 -16.44161 -16.28527 -15.71831 -15.23668 -14.90131 -14.79076 -14.59594 -14.52485 -14.40368 -14.35953 -14.17411 -13.99633 -13.86593 -13.77887 -13.70783 -13.30926 -12.96988 -12.76710 -12.48828 -12.17299 -11.85719 -11.72224 -11.54390 -11.41692 -10.96768 -10.70599 -10.55185 -10.05802 -9.68705 -9.60384 -9.31255 -9.14269 -8.99134 -8.78110 -7.47109 -6.63935 -4.26797 0.82097 0.95614 1.18570 1.71756 2.55194 3.00928 3.07852 3.13301 3.17440 3.36313 3.51309 3.64963 3.75809 3.97582 4.18489 4.29989 4.35029 4.60504 4.74548 4.91296 4.96910 5.07331 5.12628 5.15631 5.27243 5.33643 5.52178 5.60110 5.67061 6.00103 6.12108 6.22482 6.25865 6.34858 6.51611 6.55867 6.76652 7.16782 7.36974 7.43562 7.73854 8.20047 8.52824 8.84313 9.57727 10.52861 Molecular weight = 352.08amu Principal moments of inertia in cm(-1) A = 0.011707 B = 0.002852 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.104355 B = 9816.517058 C =11784.878384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.043 3.957 3 Si 0.947 3.053 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.377 4.377 8 H 0.101 0.899 9 O -0.195 6.195 10 C 0.442 3.558 11 O -0.564 6.564 12 C -0.196 4.196 13 C 0.010 3.990 14 C -0.234 4.234 15 C 0.154 3.846 16 N -0.540 5.540 17 C 0.427 3.573 18 N -0.644 5.644 19 C 0.177 3.823 20 C -0.090 4.090 21 C -0.101 4.101 22 C -0.102 4.102 23 C -0.163 4.163 24 C 0.510 3.490 25 F -0.178 7.178 26 F -0.179 7.179 27 F -0.177 7.177 28 C -0.110 4.110 29 H 0.274 0.726 30 H 0.153 0.847 31 H 0.137 0.863 32 H 0.158 0.842 33 H 0.437 0.563 34 H 0.142 0.858 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.813 -17.667 0.064 18.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.162 4.162 3 Si 0.771 3.229 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.452 4.452 8 H 0.118 0.882 9 O -0.100 6.100 10 C 0.293 3.707 11 O -0.465 6.465 12 C -0.204 4.204 13 C -0.016 4.016 14 C -0.256 4.256 15 C -0.004 4.004 16 N -0.257 5.257 17 C 0.192 3.808 18 N -0.282 5.282 19 C 0.079 3.921 20 C -0.110 4.110 21 C -0.119 4.119 22 C -0.122 4.122 23 C -0.165 4.165 24 C 0.456 3.544 25 F -0.159 7.159 26 F -0.160 7.160 27 F -0.158 7.158 28 C -0.131 4.131 29 H 0.084 0.916 30 H 0.170 0.830 31 H 0.154 0.846 32 H 0.175 0.825 33 H 0.291 0.709 34 H 0.160 0.840 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.485 -18.160 0.182 18.971 hybrid contribution 0.140 1.870 0.172 1.883 sum 5.625 -16.289 0.353 17.237 Atomic orbital electron populations 1.69967 1.06136 1.28288 1.44521 1.25425 0.95902 0.99112 0.95804 0.85608 0.79124 0.79213 0.78951 1.19654 1.20118 1.18873 1.21370 0.92689 0.79508 1.51661 0.88158 1.83894 1.38925 1.13210 1.73931 1.20314 0.85471 0.85112 0.79852 1.90258 1.15331 1.86405 1.54457 1.19616 0.94602 0.91115 1.15078 1.21861 0.92832 0.98882 0.88041 1.21847 1.01511 0.92883 1.09367 1.22581 0.87765 0.98952 0.91115 1.67411 1.12350 1.24322 1.21638 1.18164 0.84680 0.88302 0.89664 1.43174 1.02386 1.09359 1.73325 1.17646 0.91681 0.88163 0.94595 1.21401 0.99979 0.92520 0.97149 1.20960 0.94129 0.97910 0.98935 1.20784 0.97523 0.97421 0.96430 1.19591 0.96571 0.97602 1.02694 1.18305 0.83857 0.73617 0.78643 1.93220 1.92135 1.87787 1.42778 1.93174 1.69151 1.70489 1.83207 1.93202 1.86168 1.40445 1.95983 1.20617 0.96058 0.97555 0.98896 0.91642 0.82974 0.84553 0.82454 0.70858 0.84005 0.84825 0.85064 0.84590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.48 13.67 55.49 0.76 -22.73 16 2 C 0.04 1.15 5.50 -17.52 -0.10 1.06 16 3 Si 0.95 20.18 29.55 -169.99 -5.02 15.15 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.38 -10.51 9.65 30.94 0.30 -10.21 16 8 H 0.10 2.80 6.86 -52.49 -0.36 2.44 16 9 O -0.19 -5.25 9.08 -21.81 -0.20 -5.45 16 10 C 0.44 10.55 7.82 34.39 0.27 10.82 16 11 O -0.56 -13.92 12.94 -19.32 -0.25 -14.17 16 12 C -0.20 -3.82 5.91 -104.66 -0.62 -4.44 16 13 C 0.01 0.16 9.73 -38.87 -0.38 -0.22 16 14 C -0.23 -2.99 10.09 -39.49 -0.40 -3.39 16 15 C 0.15 1.90 11.16 -17.48 -0.20 1.71 16 16 N -0.54 -8.15 7.19 -12.15 -0.09 -8.23 16 17 C 0.43 7.54 7.21 -155.08 -1.12 6.43 16 18 N -0.64 -11.20 5.31 -9.79 -0.05 -11.26 16 19 C 0.18 2.65 6.26 -83.74 -0.52 2.12 16 20 C -0.09 -1.17 8.57 -39.38 -0.34 -1.50 16 21 C -0.10 -1.05 10.04 -39.61 -0.40 -1.45 16 22 C -0.10 -1.09 9.40 -39.55 -0.37 -1.46 16 23 C -0.16 -2.00 5.45 -104.65 -0.57 -2.57 16 24 C 0.51 6.10 3.36 36.01 0.12 6.23 16 25 F -0.18 -2.20 17.30 2.25 0.04 -2.16 16 26 F -0.18 -2.03 16.46 2.25 0.04 -1.99 16 27 F -0.18 -2.26 16.46 2.25 0.04 -2.22 16 28 C -0.11 -1.52 9.32 -39.38 -0.37 -1.89 16 29 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.15 2.62 7.71 -52.49 -0.40 2.21 16 31 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.16 1.32 8.06 -52.48 -0.42 0.89 16 33 H 0.44 8.31 5.40 -40.85 -0.22 8.09 16 34 H 0.14 1.87 6.40 -52.49 -0.34 1.53 16 35 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 36 H 0.13 1.10 7.60 -52.49 -0.40 0.71 16 37 H 0.14 1.84 7.60 -52.48 -0.40 1.44 16 LS Contribution 342.77 15.07 5.17 5.17 Total: -1.00 -30.19 342.77 -6.78 -36.97 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -2.52 Total: 9.67 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -4.68 Total: 1.23 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.62 Total: -42.21 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.45 Total: -19.62 kcal Atomic # 9 Polarization: -6.48 SS G_CDS: 0.11 Total: -6.37 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.19 -6.78 -36.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016183241.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.983 kcal (2) G-P(sol) polarization free energy of solvation -30.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds