Wall clock time and date at job start Tue Mar 31 2020 06:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38287 * 119.97307 * 2 1 4 4 C 1.38241 * 120.11396 * 180.02562 * 3 2 1 5 5 C 1.38170 * 120.05337 * 359.97388 * 4 3 2 6 6 C 1.50700 * 120.02788 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47512 * 300.02787 * 6 5 4 8 8 C 1.53005 * 109.46944 * 60.02269 * 6 5 4 9 9 C 1.38708 * 119.94383 * 0.02562 * 5 4 3 10 10 O 1.35902 * 120.05196 * 180.02562 * 9 5 4 11 11 C 1.42903 * 116.99740 * 180.02562 * 10 9 5 12 12 C 1.50697 * 109.47095 * 179.97438 * 11 10 9 13 13 O 1.21285 * 120.00263 * 0.02562 * 12 11 10 14 14 N 1.34784 * 120.00155 * 179.97438 * 12 11 10 15 15 C 1.39240 * 120.00003 * 184.03416 * 14 12 11 16 16 C 1.39473 * 119.83330 * 324.50131 * 15 14 12 17 17 C 1.36373 * 120.16985 * 179.71895 * 16 15 14 18 18 C 1.40870 * 119.82617 * 0.57481 * 17 16 15 19 19 C 1.41150 * 120.16468 * 179.67480 * 18 17 16 20 20 H 1.07997 * 120.00243 * 214.80183 * 19 18 17 21 21 C 1.39904 * 119.99822 * 34.80101 * 19 18 17 22 22 N 1.30870 * 120.00328 * 355.56364 * 21 19 18 23 23 Si 1.86806 * 119.99735 * 175.55579 * 21 19 18 24 24 H 1.48499 * 109.47171 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47026 * 120.00590 * 23 21 19 26 26 H 1.48503 * 109.47366 * 240.00094 * 23 21 19 27 27 C 1.40868 * 119.67222 * 359.69893 * 18 17 16 28 28 C 1.36374 * 119.82724 * 359.97438 * 27 18 17 29 29 C 1.38127 * 119.97289 * 180.24876 * 2 1 3 30 30 H 1.09004 * 109.47159 * 90.00392 * 1 2 3 31 31 H 1.09005 * 109.46995 * 210.00217 * 1 2 3 32 32 H 1.08996 * 109.47274 * 330.00645 * 1 2 3 33 33 H 1.08000 * 119.94174 * 359.97438 * 3 2 1 34 34 H 1.07998 * 119.97489 * 179.97438 * 4 3 2 35 35 H 1.08994 * 109.47417 * 180.02562 * 6 5 4 36 36 H 1.09003 * 109.47441 * 59.99426 * 7 6 5 37 37 H 1.08991 * 109.47336 * 179.97438 * 7 6 5 38 38 H 1.09000 * 109.46998 * 299.99890 * 7 6 5 39 39 H 1.09001 * 109.47126 * 179.97438 * 8 6 5 40 40 H 1.09004 * 109.47444 * 300.00267 * 8 6 5 41 41 H 1.09006 * 109.47099 * 59.99455 * 8 6 5 42 42 H 1.08998 * 109.47492 * 60.00067 * 11 10 9 43 43 H 1.09004 * 109.46966 * 299.99736 * 11 10 9 44 44 H 0.97003 * 119.99398 * 4.30771 * 14 12 11 45 45 H 1.08003 * 119.91540 * 0.02562 * 16 15 14 46 46 H 1.08002 * 120.08889 * 180.24701 * 17 16 15 47 47 H 0.97000 * 120.00314 * 179.97438 * 22 21 19 48 48 H 1.07998 * 120.09073 * 179.97438 * 27 18 17 49 49 H 1.07998 * 119.91849 * 180.02562 * 28 27 18 50 50 H 1.07996 * 120.02681 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2013 -0.0005 5 6 4.2752 0.0071 -0.0005 6 6 5.7822 0.0115 -0.0017 7 6 6.2892 0.7342 -1.2512 8 6 6.2910 0.7343 1.2472 9 6 3.5845 -1.1958 -0.0005 10 8 4.2658 -2.3717 0.0000 11 6 3.4892 -3.5714 -0.0006 12 6 4.4090 -4.7651 -0.0005 13 8 5.6111 -4.6045 0.0005 14 7 3.8957 -6.0114 -0.0005 15 6 4.7427 -7.1132 0.0844 16 6 5.9897 -7.0795 -0.5394 17 6 6.8271 -8.1525 -0.4558 18 6 6.4249 -9.3017 0.2527 19 6 7.2831 -10.4190 0.3379 20 1 6.8711 -11.4173 0.3445 21 6 8.6677 -10.2333 0.4138 22 7 9.1728 -9.0298 0.3185 23 14 9.7956 -11.7034 0.6515 24 1 8.9826 -12.9436 0.7290 25 1 10.7339 -11.7979 -0.4956 26 1 10.5670 -11.5372 1.9096 27 6 5.1616 -9.3305 0.8753 28 6 4.3378 -8.2471 0.7886 29 6 2.1971 -1.1965 -0.0052 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5137 33 1 1.6565 2.1324 -0.0004 34 1 4.1175 2.1382 -0.0010 35 1 6.1485 -1.0151 -0.0020 36 1 5.9228 1.7608 -1.2511 37 1 7.3791 0.7377 -1.2518 38 1 5.9267 0.2193 -2.1410 39 1 7.3810 0.7371 1.2466 40 1 5.9247 1.7609 1.2474 41 1 5.9297 0.2195 2.1375 42 1 2.8611 -3.5972 -0.8910 43 1 2.8598 -3.5971 0.8890 44 1 2.9364 -6.1407 -0.0636 45 1 6.2949 -6.1993 -1.0859 46 1 7.7941 -8.1235 -0.9361 47 1 10.1327 -8.9010 0.3715 48 1 4.8462 -10.2081 1.4199 49 1 3.3692 -8.2674 1.2657 50 1 1.6571 -2.1318 -0.0097 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000017368320.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:37 Heat of formation + Delta-G solvation = -40.618547 kcal Electronic energy + Delta-G solvation = -29937.123719 eV Core-core repulsion = 25893.764225 eV Total energy + Delta-G solvation = -4043.359494 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 353.178 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.71048 -39.61892 -37.90818 -37.00708 -35.89290 -34.47691 -32.96443 -31.70757 -30.49269 -29.66300 -29.37908 -28.16200 -27.18574 -26.72111 -24.80572 -23.05743 -22.12910 -21.50993 -21.00863 -20.22979 -19.56871 -17.82033 -17.39005 -17.29042 -16.37405 -16.22400 -16.07561 -15.63859 -15.15566 -14.45904 -14.33809 -14.26087 -13.98581 -13.95657 -13.84028 -13.77185 -13.37390 -13.05850 -12.93039 -12.67292 -12.39062 -12.36072 -12.12458 -12.04937 -12.00211 -11.74662 -11.72823 -11.49406 -11.24732 -11.17124 -10.99911 -10.90818 -10.70822 -10.64738 -10.52715 -9.96491 -9.88639 -9.50080 -9.04690 -8.90313 -8.78533 -8.21431 -7.54972 -6.93271 -6.60768 -4.35161 1.11440 1.27376 2.48435 2.68596 2.95713 3.06834 3.10385 3.15244 3.29671 3.52838 3.88574 3.98238 4.42583 4.56234 4.69125 4.71079 4.75009 4.89651 4.94457 4.98381 5.00594 5.15379 5.16786 5.28030 5.30638 5.38109 5.47346 5.55346 5.60031 5.63973 5.72293 5.75995 5.92439 5.97491 6.08533 6.09886 6.19925 6.22743 6.35375 6.37458 6.49378 6.60844 6.72746 6.94090 7.01969 7.16364 7.25680 7.26786 7.60974 7.63991 7.92757 8.07651 8.13053 8.30698 8.63413 8.68186 8.91844 8.98489 10.30036 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.016015 B = 0.002007 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.937141 B =13946.890402 C =15400.875521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.054 4.054 3 C -0.159 4.159 4 C -0.075 4.075 5 C -0.106 4.106 6 C -0.057 4.057 7 C -0.140 4.140 8 C -0.140 4.140 9 C 0.137 3.863 10 O -0.283 6.283 11 C 0.044 3.956 12 C 0.499 3.501 13 O -0.502 6.502 14 N -0.648 5.648 15 C 0.003 3.997 16 C -0.092 4.092 17 C -0.144 4.144 18 C 0.101 3.899 19 C -0.461 4.461 20 H 0.077 0.923 21 C 0.068 3.932 22 N -0.806 5.806 23 Si 0.915 3.085 24 H -0.262 1.262 25 H -0.274 1.274 26 H -0.274 1.274 27 C -0.204 4.204 28 C -0.111 4.111 29 C -0.210 4.210 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.092 0.908 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.395 0.605 45 H 0.107 0.893 46 H 0.131 0.869 47 H 0.278 0.722 48 H 0.097 0.903 49 H 0.091 0.909 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.032 18.983 -1.176 23.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.054 4.054 3 C -0.177 4.177 4 C -0.093 4.093 5 C -0.107 4.107 6 C -0.076 4.076 7 C -0.197 4.197 8 C -0.198 4.198 9 C 0.091 3.909 10 O -0.195 6.195 11 C -0.035 4.035 12 C 0.283 3.717 13 O -0.376 6.376 14 N -0.293 5.293 15 C -0.089 4.089 16 C -0.112 4.112 17 C -0.164 4.164 18 C 0.098 3.902 19 C -0.492 4.492 20 H 0.095 0.905 21 C -0.147 4.147 22 N -0.432 5.432 23 Si 0.740 3.260 24 H -0.186 1.186 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.224 4.224 28 C -0.131 4.131 29 C -0.229 4.229 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.139 0.861 34 H 0.145 0.855 35 H 0.111 0.889 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.229 0.771 45 H 0.125 0.875 46 H 0.149 0.851 47 H 0.089 0.911 48 H 0.116 0.884 49 H 0.109 0.891 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.704 19.207 -1.155 23.058 hybrid contribution -0.294 -0.720 0.259 0.820 sum -12.999 18.487 -0.896 22.617 Atomic orbital electron populations 1.20804 0.91122 1.02815 1.02397 1.19656 0.95878 0.92501 0.97336 1.20881 0.94056 0.97371 1.05428 1.20791 0.93766 0.96907 0.97820 1.19228 0.95955 0.90082 1.05430 1.20022 0.90064 1.01953 0.95524 1.21825 1.00914 0.99772 0.97220 1.21831 1.00913 0.99767 0.97248 1.18878 0.90235 0.85729 0.96039 1.86179 1.33921 1.11161 1.88203 1.22491 0.93984 0.83727 1.03315 1.19929 0.89237 0.83709 0.78805 1.90769 1.14830 1.85143 1.46819 1.42769 1.09616 1.04273 1.72690 1.17220 0.94255 0.87799 1.09639 1.20645 0.93231 0.98381 0.98981 1.21311 1.00088 0.93747 1.01276 1.17751 0.90776 0.93363 0.88310 1.19524 0.90733 0.94119 1.44836 0.90531 1.25913 0.99042 0.96887 0.92905 1.69792 1.14006 1.21992 1.37448 0.86149 0.79766 0.81534 0.78519 1.18603 1.19968 1.19976 1.20689 0.97485 0.98084 1.06171 1.20063 0.98863 0.94221 0.99950 1.21098 0.92696 0.98987 1.10111 0.91042 0.91531 0.91428 0.86137 0.85528 0.88938 0.92904 0.92330 0.92642 0.92329 0.92900 0.92630 0.89408 0.89299 0.77116 0.87501 0.85100 0.91056 0.88449 0.89078 0.85491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.01 36.01 0.36 -0.38 16 2 C -0.05 -0.50 5.88 -104.65 -0.62 -1.11 16 3 C -0.16 -1.44 9.70 -39.56 -0.38 -1.82 16 4 C -0.07 -0.73 8.71 -39.61 -0.35 -1.08 16 5 C -0.11 -1.26 4.79 -104.47 -0.50 -1.76 16 6 C -0.06 -0.68 3.06 -91.77 -0.28 -0.96 16 7 C -0.14 -1.42 9.01 37.16 0.33 -1.08 16 8 C -0.14 -1.44 9.01 37.16 0.33 -1.10 16 9 C 0.14 1.75 6.66 -39.22 -0.26 1.49 16 10 O -0.28 -4.22 8.44 -39.34 -0.33 -4.56 16 11 C 0.04 0.55 5.22 36.00 0.19 0.74 16 12 C 0.50 8.75 7.73 -10.98 -0.08 8.67 16 13 O -0.50 -11.44 13.94 -14.36 -0.20 -11.64 16 14 N -0.65 -10.93 5.30 -9.74 -0.05 -10.98 16 15 C 0.00 0.06 6.30 -83.57 -0.53 -0.47 16 16 C -0.09 -2.30 8.61 -39.79 -0.34 -2.64 16 17 C -0.14 -3.88 8.61 -39.26 -0.34 -4.21 16 18 C 0.10 2.69 5.55 -106.80 -0.59 2.09 16 19 C -0.46 -12.28 9.02 -37.85 -0.34 -12.62 16 20 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 21 C 0.07 1.75 5.42 -17.34 -0.09 1.65 16 22 N -0.81 -21.57 10.60 55.55 0.59 -20.98 16 23 Si 0.92 19.12 29.56 -169.99 -5.03 14.10 16 24 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 27 C -0.20 -4.88 9.74 -39.26 -0.38 -5.27 16 28 C -0.11 -2.37 9.90 -39.79 -0.39 -2.77 16 29 C -0.21 -2.21 8.69 -39.43 -0.34 -2.55 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 32 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 33 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.13 0.99 7.10 -52.49 -0.37 0.62 16 35 H 0.09 1.36 6.99 -51.93 -0.36 1.00 16 36 H 0.05 0.45 7.39 -51.93 -0.38 0.06 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.45 7.39 -51.93 -0.38 0.07 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.84 7.65 -51.93 -0.40 0.45 16 43 H 0.09 0.88 7.67 -51.93 -0.40 0.48 16 44 H 0.40 4.84 8.82 -40.82 -0.36 4.48 16 45 H 0.11 2.69 6.25 -52.48 -0.33 2.36 16 46 H 0.13 3.69 6.13 -52.49 -0.32 3.37 16 47 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 48 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 49 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 50 H 0.13 1.08 6.30 -52.49 -0.33 0.75 16 LS Contribution 409.68 15.07 6.17 6.17 Total: -1.00 -32.14 409.68 -10.86 -43.00 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -7.41 Total: 10.07 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -4.61 Total: -25.19 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: 0.54 Total: -31.95 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.53 Total: -16.20 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.14 -10.86 -43.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017368320.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.383 kcal (2) G-P(sol) polarization free energy of solvation -32.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds