Wall clock time and date at job start Tue Mar 31 2020 05:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31582 * 1 3 3 Si 1.86806 * 119.99790 * 2 1 4 4 H 1.48494 * 109.47248 * 270.00368 * 3 2 1 5 5 H 1.48504 * 109.46993 * 30.00385 * 3 2 1 6 6 H 1.48497 * 109.46761 * 150.00416 * 3 2 1 7 7 C 1.38613 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00137 * 179.97438 * 7 2 1 9 9 O 1.34812 * 119.99944 * 359.97438 * 7 2 1 10 10 C 1.35800 * 117.00080 * 185.06881 * 9 7 2 11 11 C 1.38906 * 119.99279 * 354.48960 * 10 9 7 12 12 C 1.38008 * 120.00476 * 180.02562 * 11 10 9 13 13 C 1.38948 * 119.99686 * 0.02562 * 12 11 10 14 14 N 1.39781 * 120.00795 * 179.97438 * 13 12 11 15 15 S 1.65606 * 119.99974 * 134.17933 * 14 13 12 16 16 O 1.42097 * 106.40197 * 184.84963 * 15 14 13 17 17 O 1.42102 * 106.40124 * 51.93362 * 15 14 13 18 18 C 1.76198 * 107.21887 * 298.39257 * 15 14 13 19 19 C 1.38241 * 120.00405 * 115.17509 * 18 15 14 20 20 C 1.38222 * 120.00836 * 180.29619 * 19 18 15 21 21 C 1.38263 * 120.02808 * 359.45121 * 20 19 18 22 22 C 1.38194 * 120.01067 * 0.54226 * 21 20 19 23 23 C 1.38330 * 120.00418 * 295.19359 * 18 15 14 24 24 Cl 1.73596 * 120.01553 * 359.95719 * 23 18 15 25 25 C 1.38958 * 119.98760 * 0.24681 * 13 12 11 26 26 C 1.38012 * 119.99038 * 359.49991 * 25 13 12 27 27 H 0.96999 * 120.00413 * 359.97438 * 1 2 3 28 28 H 1.07996 * 119.99444 * 359.97438 * 11 10 9 29 29 H 1.08000 * 119.99887 * 179.97438 * 12 11 10 30 30 H 0.96995 * 120.00201 * 314.18265 * 14 13 12 31 31 H 1.07996 * 119.99635 * 0.02562 * 19 18 15 32 32 H 1.07999 * 119.98626 * 179.69916 * 20 19 18 33 33 H 1.07999 * 119.99431 * 180.27382 * 21 20 19 34 34 H 1.08002 * 120.00473 * 179.74409 * 22 21 20 35 35 H 1.07994 * 120.00491 * 179.74871 * 25 13 12 36 36 H 1.07999 * 119.99672 * 180.23050 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4972 2.0466 -1.4000 5 1 1.4472 2.6527 0.7001 6 1 3.5473 1.4402 0.6999 7 6 2.0089 -1.2004 -0.0005 8 1 3.0889 -1.2004 -0.0010 9 8 1.3349 -2.3679 -0.0005 10 6 2.0704 -3.5045 0.1058 11 6 3.4578 -3.4375 0.0929 12 6 4.2056 -4.5924 0.2005 13 6 3.5706 -5.8224 0.3211 14 7 4.3277 -6.9924 0.4295 15 16 3.9409 -8.1260 1.5731 16 8 4.9497 -9.1245 1.5056 17 8 2.5576 -8.4065 1.4081 18 6 4.1079 -7.3555 3.1488 19 6 2.9970 -7.1760 3.9517 20 6 3.1269 -6.5660 5.1853 21 6 4.3696 -6.1453 5.6217 22 6 5.4808 -6.3244 4.8199 23 6 5.3506 -6.9298 3.5824 24 17 6.7461 -7.1555 2.5749 25 6 2.1827 -5.8897 0.3283 26 6 1.4354 -4.7340 0.2260 27 1 -0.4851 0.8400 0.0004 28 1 3.9513 -2.4816 -0.0021 29 1 5.2843 -4.5402 0.1900 30 1 5.0797 -7.1402 -0.1650 31 1 2.0268 -7.5084 3.6133 32 1 2.2580 -6.4216 5.8102 33 1 4.4711 -5.6728 6.5875 34 1 6.4508 -5.9920 5.1591 35 1 1.6888 -6.8460 0.4180 36 1 0.3567 -4.7858 0.2353 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000018895572.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:00 Heat of formation + Delta-G solvation = -43.745770 kcal Electronic energy + Delta-G solvation = -26162.413459 eV Core-core repulsion = 22151.739096 eV Total energy + Delta-G solvation = -4010.674363 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 353.032 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -39.49102 -39.23036 -37.47180 -37.06060 -36.69589 -35.88572 -33.91810 -32.22686 -31.64650 -31.05603 -30.31666 -27.58002 -25.35358 -23.64794 -23.10444 -22.23966 -21.46639 -19.64883 -18.52881 -18.08955 -17.48663 -17.32581 -16.66109 -16.50220 -15.86975 -15.04467 -14.78217 -14.67144 -14.51325 -14.17764 -13.95113 -13.71391 -13.70308 -13.05524 -12.97175 -12.69735 -12.48238 -12.15098 -12.08270 -11.89928 -11.84880 -11.82022 -11.63877 -11.50767 -11.28494 -11.14101 -10.84566 -10.66790 -10.47867 -10.04427 -9.72121 -9.36834 -9.11585 -8.85203 -8.34355 -7.15031 -6.53549 -4.11470 0.22447 0.51798 0.87316 1.66141 2.08175 2.15188 2.86838 3.07306 3.08362 3.13133 3.16795 3.64044 3.89427 4.20327 4.41114 4.54034 4.64545 4.85840 5.00743 5.01997 5.18070 5.20971 5.44065 5.45788 5.55027 5.63614 5.73287 5.78252 5.98572 6.08983 6.27287 6.38796 6.50159 6.71894 6.88544 6.99057 7.17732 7.24321 7.33876 7.71561 7.90672 8.91599 9.59896 10.63828 Molecular weight = 353.03amu Principal moments of inertia in cm(-1) A = 0.013780 B = 0.003302 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.429714 B = 8477.600585 C = 8933.729620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.041 3.959 3 Si 0.941 3.059 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.392 4.392 8 H 0.093 0.907 9 O -0.172 6.172 10 C 0.151 3.849 11 C -0.222 4.222 12 C -0.070 4.070 13 C 0.029 3.971 14 N -1.036 6.036 15 S 2.686 3.314 16 O -0.953 6.953 17 O -0.949 6.949 18 C -0.665 4.665 19 C -0.004 4.004 20 C -0.134 4.134 21 C -0.054 4.054 22 C -0.132 4.132 23 C 0.057 3.943 24 Cl -0.046 7.046 25 C -0.098 4.098 26 C -0.173 4.173 27 H 0.271 0.729 28 H 0.132 0.868 29 H 0.113 0.887 30 H 0.419 0.581 31 H 0.153 0.847 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.282 -11.925 8.983 18.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.111 0.889 9 O -0.075 6.075 10 C 0.096 3.904 11 C -0.242 4.242 12 C -0.092 4.092 13 C -0.066 4.066 14 N -0.790 5.790 15 S 2.776 3.224 16 O -0.943 6.943 17 O -0.939 6.939 18 C -0.751 4.751 19 C -0.023 4.023 20 C -0.153 4.153 21 C -0.073 4.073 22 C -0.151 4.151 23 C 0.029 3.971 24 Cl -0.017 7.017 25 C -0.119 4.119 26 C -0.193 4.193 27 H 0.081 0.919 28 H 0.149 0.851 29 H 0.131 0.869 30 H 0.255 0.745 31 H 0.171 0.829 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.159 0.841 35 H 0.163 0.837 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.607 -12.607 8.864 18.161 hybrid contribution 1.248 1.509 0.183 1.967 sum 10.855 -11.098 9.047 17.969 Atomic orbital electron populations 1.70044 1.05969 1.27846 1.45416 1.25300 0.95851 0.98888 0.96405 0.85710 0.78919 0.80008 0.78799 1.19802 1.20202 1.19176 1.21337 0.91852 0.80772 1.52885 0.88945 1.83992 1.34355 1.11466 1.77644 1.19474 0.90278 0.88162 0.92462 1.21049 0.93678 0.98595 1.10917 1.20709 0.98696 0.90885 0.98906 1.16873 0.89743 0.84611 1.15338 1.52695 1.43879 1.34389 1.48005 1.02479 0.74105 0.72924 0.72927 1.93613 1.59387 1.55111 1.86140 1.93549 1.32781 1.82692 1.84924 1.30865 0.98090 1.20446 1.25669 1.21046 0.97184 0.91583 0.92523 1.21432 0.98214 0.98985 0.96682 1.21454 0.92061 0.94685 0.99068 1.21165 1.00474 1.00536 0.92944 1.20433 0.87172 0.96633 0.92885 1.98431 1.40539 1.95144 1.67601 1.21312 0.91818 0.99321 0.99407 1.20118 0.99842 0.89628 1.09751 0.91884 0.85068 0.86913 0.74452 0.82905 0.84215 0.84265 0.84109 0.83746 0.85744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.31 13.67 55.48 0.76 -23.55 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 19.70 29.55 -169.99 -5.02 14.68 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.39 -10.46 9.48 30.87 0.29 -10.16 16 8 H 0.09 2.26 5.20 -52.48 -0.27 1.99 16 9 O -0.17 -4.68 9.76 -0.05 0.00 -4.68 16 10 C 0.15 3.45 6.65 -39.09 -0.26 3.19 16 11 C -0.22 -4.49 9.16 -39.42 -0.36 -4.85 16 12 C -0.07 -1.19 9.96 -39.40 -0.39 -1.59 16 13 C 0.03 0.48 6.14 -83.70 -0.51 -0.03 16 14 N -1.04 -14.20 5.55 32.45 0.18 -14.02 16 15 S 2.69 38.32 4.96 -107.50 -0.53 37.79 16 16 O -0.95 -14.71 16.51 -57.17 -0.94 -15.65 16 17 O -0.95 -15.10 14.09 -57.17 -0.81 -15.91 16 18 C -0.67 -8.90 5.77 -39.55 -0.23 -9.12 16 19 C 0.00 -0.05 9.55 -39.59 -0.38 -0.43 16 20 C -0.13 -1.34 10.05 -39.58 -0.40 -1.73 16 21 C -0.05 -0.49 10.05 -39.59 -0.40 -0.89 16 22 C -0.13 -1.36 9.83 -39.55 -0.39 -1.75 16 23 C 0.06 0.71 6.30 -39.50 -0.25 0.46 16 24 Cl -0.05 -0.56 26.48 -51.86 -1.37 -1.94 16 25 C -0.10 -1.74 9.22 -39.40 -0.36 -2.11 16 26 C -0.17 -3.51 9.98 -39.42 -0.39 -3.90 16 27 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.13 2.64 5.63 -52.49 -0.30 2.35 16 29 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.42 4.72 8.96 -34.47 -0.31 4.41 16 31 H 0.15 1.70 7.33 -52.49 -0.38 1.31 16 32 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.15 2.45 5.69 -52.49 -0.30 2.15 16 36 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 340.94 15.07 5.14 5.14 Total: -1.00 -32.20 340.94 -9.54 -41.75 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -2.81 Total: 8.33 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: -4.13 Total: -31.94 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.94 Total: -37.57 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -1.75 Total: -36.24 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Atomic # 16 Polarization: 38.32 SS G_CDS: -0.53 Total: 37.79 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.37 Total: -1.94 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.20 -9.54 -41.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018895572.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.001 kcal (2) G-P(sol) polarization free energy of solvation -32.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds