Wall clock time and date at job start Tue Mar 31 2020 05:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35756 * 117.00036 * 2 1 4 4 C 1.38614 * 120.13692 * 359.97438 * 3 2 1 5 5 C 1.38145 * 120.08520 * 180.02562 * 4 3 2 6 6 C 1.38489 * 120.35910 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.28130 * 359.97438 * 6 5 4 8 8 C 1.39589 * 119.90561 * 359.97438 * 7 6 5 9 9 C 1.47787 * 120.17479 * 179.97438 * 8 7 6 10 10 C 1.41006 * 120.98234 * 90.01987 * 9 8 7 11 11 C 1.43199 * 120.51503 * 359.95264 * 10 9 8 12 12 N 4.33040 * 126.15169 * 82.28301 * 2 1 3 13 13 C 1.40750 * 118.96777 * 179.97438 * 10 9 8 14 14 N 1.38075 * 119.52886 * 180.02562 * 13 10 9 15 15 N 1.32288 * 120.94459 * 0.02562 * 13 10 9 16 16 C 1.32516 * 122.18004 * 359.97438 * 15 13 10 17 17 S 1.76199 * 119.54136 * 180.02562 * 16 15 13 18 18 C 1.76199 * 99.99818 * 0.02562 * 17 16 15 19 19 H 1.07996 * 120.00233 * 359.97438 * 18 17 16 20 20 C 1.38850 * 120.00098 * 179.97438 * 18 17 16 21 21 N 1.31507 * 120.00226 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 120.00187 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46919 * 90.00258 * 22 20 18 24 24 H 1.48496 * 109.47085 * 210.00208 * 22 20 18 25 25 H 1.48495 * 109.46718 * 330.00326 * 22 20 18 26 26 C 1.40771 * 120.92234 * 359.75192 * 16 15 13 27 27 C 1.43195 * 120.53230 * 180.26030 * 26 16 15 28 28 N 4.32025 * 125.96891 * 277.56997 * 2 1 3 29 29 H 1.09001 * 109.47043 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47600 * 300.00131 * 1 2 3 31 31 H 1.09007 * 109.47338 * 60.00142 * 1 2 3 32 32 H 1.08004 * 119.96033 * 0.02562 * 4 3 2 33 33 H 1.07998 * 119.81909 * 179.74610 * 5 4 3 34 34 H 1.07999 * 119.85483 * 180.02562 * 6 5 4 35 35 H 1.07995 * 120.04518 * 180.02562 * 7 6 5 36 36 H 0.97000 * 120.00211 * 0.02562 * 14 13 10 37 37 H 0.97005 * 120.00534 * 179.97438 * 14 13 10 38 38 H 0.97001 * 120.00692 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.2931 2.3739 -0.0005 5 6 1.9214 3.6042 -0.0011 6 6 3.3040 3.6841 -0.0016 7 6 4.0667 2.5356 -0.0011 8 6 3.4438 1.2864 0.0005 9 6 4.2556 0.0515 0.0005 10 6 4.6553 -0.5544 1.2094 11 6 4.2818 0.0178 2.4678 12 7 3.9836 0.4695 3.4649 13 6 5.4275 -1.7302 1.1599 14 7 5.8248 -2.3334 2.3367 15 7 5.7780 -2.2655 0.0021 16 6 5.4254 -1.7312 -1.1581 17 16 5.9302 -2.5032 -2.6593 18 6 6.8298 -3.8728 -2.0116 19 1 6.9179 -4.0044 -0.9433 20 6 7.4254 -4.7830 -2.8746 21 7 7.3186 -4.6225 -4.1754 22 14 8.3797 -6.2346 -2.1878 23 1 7.4622 -7.3875 -2.0035 24 1 9.4608 -6.6088 -3.1346 25 1 8.9747 -5.8614 -0.8795 26 6 4.6482 -0.5585 -1.2080 27 6 4.2672 0.0087 -2.4664 28 7 3.9664 0.4606 -3.4661 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.2145 2.3192 -0.0005 33 1 1.3312 4.5086 -0.0056 34 1 3.7867 4.6502 -0.0016 35 1 5.1446 2.6023 -0.0011 36 1 5.5713 -1.9470 3.1895 37 1 6.3568 -3.1442 2.3106 38 1 7.7350 -5.2581 -4.7784 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019117334.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:28 Heat of formation + Delta-G solvation = 80.447472 kcal Electronic energy + Delta-G solvation = -27233.611155 eV Core-core repulsion = 23360.766478 eV Total energy + Delta-G solvation = -3872.844677 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 352.073 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.54564 -39.49655 -37.43857 -36.41674 -35.92811 -34.47805 -33.17692 -32.92568 -30.38068 -29.87953 -29.58504 -27.36552 -26.00563 -24.67737 -23.78497 -22.14159 -21.56968 -19.80124 -18.65036 -18.08782 -17.77519 -17.01647 -16.53005 -16.19865 -15.78063 -15.51504 -15.13821 -14.94539 -14.56367 -14.51247 -14.46870 -13.72283 -13.48267 -13.13940 -13.08714 -13.01287 -12.69790 -12.61819 -12.52945 -12.26415 -12.14100 -11.80912 -11.74522 -11.45548 -11.32066 -11.21656 -11.18506 -11.03008 -10.70576 -10.33100 -9.62024 -9.23711 -9.10579 -9.04796 -8.99554 -8.25510 -7.93083 -7.05337 -6.69718 -4.40550 1.00981 1.11707 1.29845 1.35835 2.68254 2.93928 3.05327 3.10167 3.16078 3.18286 3.20233 3.27632 3.55491 3.68584 3.73654 3.87310 4.24029 4.32267 4.44750 4.62926 4.71990 4.78544 4.82421 4.93189 4.98429 5.05228 5.16826 5.30133 5.38934 5.40087 5.50219 5.62051 5.74898 5.98739 6.13037 6.20446 6.22123 6.37046 6.48738 6.64901 7.28513 7.30430 7.37132 7.53530 7.82540 8.13284 8.20694 8.50539 8.81988 10.36690 Molecular weight = 352.07amu Principal moments of inertia in cm(-1) A = 0.013560 B = 0.003584 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.404481 B = 7810.908136 C = 8775.499088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.302 6.302 3 C 0.155 3.845 4 C -0.211 4.211 5 C -0.072 4.072 6 C -0.158 4.158 7 C -0.054 4.054 8 C -0.100 4.100 9 C 0.163 3.837 10 C -0.206 4.206 11 C 0.283 3.717 12 N -0.455 5.455 13 C 0.495 3.505 14 N -0.836 5.836 15 N -0.537 5.537 16 C 0.193 3.807 17 S 0.186 5.814 18 C -0.543 4.543 19 H 0.117 0.883 20 C 0.076 3.924 21 N -0.862 5.862 22 Si 0.934 3.066 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.264 1.264 26 C -0.146 4.146 27 C 0.280 3.720 28 N -0.435 5.435 29 H 0.102 0.898 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.130 0.870 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.135 0.865 36 H 0.405 0.595 37 H 0.410 0.590 38 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.145 9.073 9.492 15.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.215 6.215 3 C 0.109 3.891 4 C -0.230 4.230 5 C -0.090 4.090 6 C -0.176 4.176 7 C -0.072 4.072 8 C -0.101 4.101 9 C 0.149 3.851 10 C -0.224 4.224 11 C -0.030 4.030 12 N -0.133 5.133 13 C 0.242 3.758 14 N -0.378 5.378 15 N -0.261 5.261 16 C -0.060 4.060 17 S 0.444 5.556 18 C -0.691 4.691 19 H 0.135 0.865 20 C -0.135 4.135 21 N -0.494 5.494 22 Si 0.759 3.241 23 H -0.198 1.198 24 H -0.206 1.206 25 H -0.188 1.188 26 C -0.164 4.164 27 C -0.034 4.034 28 N -0.112 5.112 29 H 0.120 0.880 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.148 0.852 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.153 0.847 36 H 0.235 0.765 37 H 0.241 0.759 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.525 9.546 7.778 14.976 hybrid contribution 0.321 -0.888 1.932 2.151 sum -8.203 8.659 9.710 15.380 Atomic orbital electron populations 1.23100 0.78361 1.04259 1.01141 1.86155 1.21289 1.26196 1.87813 1.18968 0.90905 0.84741 0.94519 1.21150 1.00039 0.92152 1.09641 1.21009 0.94719 0.96887 0.96402 1.20953 0.93791 0.98315 1.04534 1.21083 1.00337 0.90138 0.95658 1.17992 0.89705 0.92941 1.09467 1.18165 0.87731 0.89407 0.89801 1.15725 1.17770 1.02325 0.86587 1.25150 0.92511 0.92994 0.92347 1.81115 1.11353 1.09327 1.11471 1.18158 0.84910 0.85293 0.87402 1.42145 1.59604 1.31513 1.04514 1.67771 1.29693 1.33385 0.95267 1.24101 0.91373 0.91544 0.99009 1.83918 1.51747 1.22893 0.97032 1.23677 1.37013 1.09939 0.98450 0.86496 1.25269 0.95281 0.98470 0.94509 1.69914 1.40826 1.36451 1.02232 0.85895 0.78899 0.80121 0.79204 1.19767 1.20577 1.18824 1.15968 1.13201 1.00780 0.86408 1.25026 0.92979 0.93085 0.92332 1.81170 1.10393 1.09394 1.10263 0.87968 0.92737 0.92548 0.85176 0.85696 0.85458 0.84694 0.76514 0.75895 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.30 -4.38 9.95 -18.98 -0.19 -4.57 16 3 C 0.15 2.24 6.70 -38.76 -0.26 1.98 16 4 C -0.21 -2.51 9.03 -39.48 -0.36 -2.86 16 5 C -0.07 -0.78 10.03 -39.52 -0.40 -1.17 16 6 C -0.16 -1.78 10.03 -39.62 -0.40 -2.18 16 7 C -0.05 -0.72 9.78 -39.21 -0.38 -1.10 16 8 C -0.10 -1.52 3.67 -104.81 -0.38 -1.91 16 9 C 0.16 2.70 4.92 -103.92 -0.51 2.19 16 10 C -0.21 -3.27 5.81 -105.97 -0.62 -3.89 16 11 C 0.28 4.36 13.24 -22.52 -0.30 4.06 16 12 N -0.45 -7.33 18.53 41.78 0.77 -6.56 16 13 C 0.50 7.97 7.74 -155.40 -1.20 6.77 16 14 N -0.84 -10.36 8.96 31.25 0.28 -10.08 16 15 N -0.54 -10.29 8.40 -10.68 -0.09 -10.38 16 16 C 0.19 3.92 7.01 -16.30 -0.11 3.81 16 17 S 0.19 4.34 20.61 -107.50 -2.22 2.12 16 18 C -0.54 -13.46 9.25 30.96 0.29 -13.18 16 19 H 0.12 2.83 6.52 -52.49 -0.34 2.49 16 20 C 0.08 1.88 5.49 -17.46 -0.10 1.79 16 21 N -0.86 -22.51 13.22 55.49 0.73 -21.77 16 22 Si 0.93 19.12 29.55 -169.99 -5.02 14.10 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 25 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 26 C -0.15 -2.72 5.81 -105.99 -0.62 -3.34 16 27 C 0.28 5.45 13.45 -22.43 -0.30 5.15 16 28 N -0.44 -8.85 18.55 41.90 0.78 -8.08 16 29 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 31 H 0.06 0.48 7.66 -51.93 -0.40 0.09 16 32 H 0.13 1.21 6.30 -52.48 -0.33 0.88 16 33 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.41 4.31 7.62 -40.82 -0.31 4.00 16 37 H 0.41 4.60 8.95 -40.82 -0.37 4.23 16 38 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 366.20 15.07 5.52 5.52 Total: -1.00 -29.52 366.20 -7.06 -36.59 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -2.97 Total: 5.74 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -4.66 Total: -2.64 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: 2.47 Total: -56.86 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -0.19 Total: -4.57 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Atomic # 16 Polarization: 4.34 SS G_CDS: -2.22 Total: 2.12 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.52 -7.06 -36.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019117334.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.034 kcal (2) G-P(sol) polarization free energy of solvation -29.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds