Wall clock time and date at job start Tue Mar 31 2020 05:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38308 * 119.93154 * 2 1 4 4 C 1.38087 * 120.07096 * 179.76811 * 3 2 1 5 5 C 1.38894 * 119.92892 * 0.52575 * 4 3 2 6 6 N 1.39926 * 120.07095 * 179.74769 * 5 4 3 7 7 C 1.46759 * 124.34784 * 5.25371 * 6 5 4 8 8 C 1.54661 * 105.37973 * 162.85152 * 7 6 5 9 9 C 1.54628 * 101.68399 * 25.76960 * 8 7 6 10 10 C 1.34419 * 124.34772 * 185.55306 * 6 5 4 11 11 O 1.21282 * 124.94477 * 0.38409 * 10 6 5 12 12 C 1.38855 * 119.85754 * 359.72843 * 5 4 3 13 13 C 1.38125 * 119.92990 * 359.97438 * 12 5 4 14 14 S 1.76200 * 119.96492 * 180.02562 * 13 12 5 15 15 O 1.42101 * 106.40314 * 228.53466 * 14 13 12 16 16 O 1.42094 * 106.40233 * 1.45439 * 14 13 12 17 17 N 1.65602 * 107.22164 * 114.99535 * 14 13 12 18 18 C 1.46494 * 119.99916 * 278.45975 * 17 14 13 19 19 C 1.46495 * 119.99873 * 98.45648 * 17 14 13 20 20 C 1.50699 * 109.47227 * 97.05184 * 19 17 14 21 21 H 1.08001 * 119.99800 * 359.97438 * 20 19 17 22 22 C 1.37874 * 120.00547 * 180.02562 * 20 19 17 23 23 N 1.31515 * 119.99934 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00318 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47289 * 60.00102 * 24 22 20 26 26 H 1.48503 * 109.47194 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47411 * 300.00010 * 24 22 20 28 28 H 1.08998 * 109.47205 * 263.56469 * 1 2 3 29 29 H 1.09001 * 109.47229 * 143.55722 * 1 2 3 30 30 H 1.08998 * 109.47040 * 23.55991 * 1 2 3 31 31 H 1.08004 * 119.96022 * 359.97438 * 3 2 1 32 32 H 1.07996 * 120.03627 * 180.23421 * 4 3 2 33 33 H 1.09001 * 110.25036 * 281.98269 * 7 6 5 34 34 H 1.09003 * 110.24925 * 43.98400 * 7 6 5 35 35 H 1.08992 * 111.19631 * 267.59305 * 8 7 6 36 36 H 1.09009 * 110.81861 * 143.77703 * 8 7 6 37 37 H 1.08997 * 110.48378 * 216.30474 * 9 8 7 38 38 H 1.08999 * 110.48549 * 93.66851 * 9 8 7 39 39 H 1.08003 * 120.03151 * 179.97438 * 12 5 4 40 40 H 1.09008 * 109.46952 * 89.99817 * 18 17 14 41 41 H 1.08996 * 109.47322 * 210.00050 * 18 17 14 42 42 H 1.08997 * 109.47406 * 329.99806 * 18 17 14 43 43 H 1.08999 * 109.47386 * 217.04633 * 19 17 14 44 44 H 1.09003 * 109.47769 * 337.05102 * 19 17 14 45 45 H 0.96997 * 120.00539 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1986 0.0000 4 6 3.5779 1.2020 0.0048 5 6 4.2739 0.0000 -0.0013 6 7 5.6731 0.0000 -0.0018 7 6 6.5012 1.2060 0.1149 8 6 7.9092 0.7004 0.5071 9 6 7.8978 -0.7351 -0.0675 10 6 6.4315 -1.1041 -0.1149 11 8 6.0026 -2.2320 -0.2368 12 6 3.5781 -1.2016 -0.0067 13 6 2.1968 -1.1982 -0.0053 14 16 1.3130 -2.7225 -0.0113 15 8 0.3298 -2.6122 -1.0313 16 8 2.2905 -3.7533 0.0176 17 7 0.4903 -2.8179 1.4227 18 6 1.1801 -3.2673 2.6344 19 6 -0.9273 -2.4528 1.4796 20 6 -1.7711 -3.6972 1.3772 21 1 -1.2986 -4.6634 1.2792 22 6 -3.1462 -3.6023 1.4077 23 7 -3.7217 -2.4257 1.5266 24 14 -4.1920 -5.1448 1.2801 25 1 -3.8703 -6.0558 2.4079 26 1 -5.6291 -4.7748 1.3378 27 1 -3.9082 -5.8303 -0.0063 28 1 -0.3633 -0.1152 1.0212 29 1 -0.3634 -0.8267 -0.6105 30 1 -0.3633 0.9420 -0.4108 31 1 1.6553 2.1329 -0.0004 32 1 4.1162 2.1382 0.0087 33 1 6.5385 1.7318 -0.8392 34 1 6.1068 1.8607 0.8920 35 1 8.0355 0.6863 1.5896 36 1 8.6835 1.3040 0.0334 37 1 8.4409 -1.4136 0.5904 38 1 8.3273 -0.7485 -1.0692 39 1 4.1164 -2.1379 -0.0119 40 1 1.6099 -2.4072 3.1480 41 1 0.4694 -3.7661 3.2933 42 1 1.9743 -3.9630 2.3636 43 1 -1.1354 -1.9496 2.4238 44 1 -1.1640 -1.7843 0.6518 45 1 -4.6891 -2.3588 1.5476 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019625151.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:21 Heat of formation + Delta-G solvation = -61.654029 kcal Electronic energy + Delta-G solvation = -29991.395957 eV Core-core repulsion = 25908.620720 eV Total energy + Delta-G solvation = -4082.775236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 352.129 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.29589 -38.93784 -36.90018 -36.68266 -35.56587 -35.10831 -33.92123 -32.41032 -31.27199 -30.83233 -28.09826 -27.82260 -26.34424 -25.05610 -23.72627 -22.59814 -22.02191 -21.70718 -20.23912 -18.40099 -17.71522 -17.17450 -16.78520 -16.55484 -16.23638 -15.81643 -15.47648 -15.22237 -14.72168 -14.42754 -14.25990 -14.10122 -14.01780 -13.59071 -13.52606 -13.37754 -13.13572 -13.13017 -12.41635 -12.32933 -12.25739 -12.16677 -11.95111 -11.89170 -11.68920 -11.50932 -11.40484 -11.16269 -11.01509 -11.00470 -10.65823 -10.41475 -10.25307 -10.18349 -9.99435 -9.83010 -9.63307 -9.27710 -8.40166 -8.03206 -7.92159 -6.04501 -4.08058 0.79400 1.12407 1.25594 2.30875 2.49819 3.36372 3.39507 3.43919 3.46948 3.81614 3.84702 3.93644 4.30277 4.38124 4.47507 4.50492 4.70174 4.83943 4.92353 4.99638 5.03599 5.09713 5.18328 5.25941 5.30380 5.33843 5.45016 5.50193 5.72126 5.72504 5.80011 6.01500 6.06725 6.08569 6.16458 6.22038 6.34574 6.44642 6.61299 6.69605 6.79960 6.96914 7.24565 7.44200 7.61775 7.79098 7.93186 8.23248 8.94143 9.56784 11.03927 Molecular weight = 352.13amu Principal moments of inertia in cm(-1) A = 0.021940 B = 0.003048 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.902913 B = 9184.598036 C = 9867.948188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.008 3.992 3 C -0.120 4.120 4 C -0.105 4.105 5 C 0.126 3.874 6 N -0.561 5.561 7 C 0.095 3.905 8 C -0.131 4.131 9 C -0.152 4.152 10 C 0.507 3.493 11 O -0.499 6.499 12 C -0.056 4.056 13 C -0.653 4.653 14 S 2.687 3.313 15 O -0.943 6.943 16 O -0.970 6.970 17 N -0.984 5.984 18 C 0.094 3.906 19 C 0.240 3.760 20 C -0.532 4.532 21 H 0.061 0.939 22 C 0.064 3.936 23 N -0.895 5.895 24 Si 0.896 3.104 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.097 0.903 29 H 0.117 0.883 30 H 0.077 0.923 31 H 0.135 0.865 32 H 0.128 0.872 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.172 0.828 40 H 0.039 0.961 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.035 0.965 44 H 0.060 0.940 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.956 13.195 -0.217 25.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.006 3.994 3 C -0.139 4.139 4 C -0.126 4.126 5 C 0.033 3.967 6 N -0.285 5.285 7 C -0.028 4.028 8 C -0.168 4.168 9 C -0.192 4.192 10 C 0.296 3.704 11 O -0.373 6.373 12 C -0.077 4.077 13 C -0.737 4.737 14 S 2.775 3.225 15 O -0.933 6.933 16 O -0.960 6.960 17 N -0.825 5.825 18 C -0.053 4.053 19 C 0.118 3.882 20 C -0.572 4.572 21 H 0.079 0.921 22 C -0.139 4.139 23 N -0.534 5.534 24 Si 0.723 3.277 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.200 1.200 28 H 0.115 0.885 29 H 0.135 0.865 30 H 0.096 0.904 31 H 0.152 0.848 32 H 0.146 0.854 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.189 0.811 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.053 0.947 44 H 0.077 0.923 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 21.570 12.088 -0.916 24.744 hybrid contribution -0.353 0.215 0.288 0.504 sum 21.217 12.303 -0.629 24.534 Atomic orbital electron populations 1.21982 0.89457 1.06478 1.05567 1.19702 0.96597 0.91507 0.91567 1.20977 0.93134 0.98009 1.01754 1.20926 0.94656 0.95916 1.01093 1.17728 0.80963 0.94734 1.03310 1.45759 1.03807 1.09299 1.69679 1.22296 0.90549 0.87136 1.02770 1.22652 0.96052 0.95531 1.02598 1.22342 0.93755 0.98363 1.04760 1.21182 0.89537 0.84027 0.75652 1.90734 1.77873 1.21312 1.47402 1.21398 0.92385 0.99325 0.94597 1.31331 1.05330 1.21473 1.15541 1.02248 0.72814 0.73551 0.73908 1.93537 1.58227 1.86212 1.55288 1.93509 1.62218 1.53495 1.86752 1.57261 1.21069 1.80394 1.23758 1.21392 0.97385 0.98664 0.87835 1.19520 0.72576 0.96933 0.99152 1.21492 0.91187 0.93719 1.50754 0.92109 1.24905 0.97733 0.96339 0.94891 1.69896 1.10504 1.22925 1.50109 0.86589 0.78964 0.83189 0.78924 1.20186 1.21182 1.19952 0.88479 0.86538 0.90405 0.84763 0.85374 0.90095 0.89502 0.89482 0.88606 0.87363 0.87284 0.81129 0.94255 0.89941 0.91492 0.94655 0.92263 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 7.89 36.00 0.28 -2.79 16 2 C 0.01 0.14 5.88 -104.59 -0.61 -0.48 16 3 C -0.12 -1.57 9.67 -39.61 -0.38 -1.95 16 4 C -0.11 -1.25 9.40 -39.39 -0.37 -1.62 16 5 C 0.13 1.79 6.60 -83.69 -0.55 1.24 16 6 N -0.56 -6.31 3.14 -112.16 -0.35 -6.66 16 7 C 0.09 0.55 6.28 -3.03 -0.02 0.53 16 8 C -0.13 -0.50 7.19 -25.00 -0.18 -0.67 16 9 C -0.15 -0.98 6.86 -26.74 -0.18 -1.16 16 10 C 0.51 6.25 7.92 -10.86 -0.09 6.16 16 11 O -0.50 -8.58 14.82 5.56 0.08 -8.50 16 12 C -0.06 -1.00 8.79 -39.39 -0.35 -1.34 16 13 C -0.65 -12.15 5.90 -39.61 -0.23 -12.39 16 14 S 2.69 58.74 5.07 -107.50 -0.54 58.19 16 15 O -0.94 -23.02 14.34 -57.17 -0.82 -23.84 16 16 O -0.97 -22.63 15.76 -57.17 -0.90 -23.53 16 17 N -0.98 -21.34 3.12 -123.06 -0.38 -21.72 16 18 C 0.09 1.71 10.70 59.84 0.64 2.35 16 19 C 0.24 5.93 3.78 -5.20 -0.02 5.91 16 20 C -0.53 -14.89 9.37 -34.44 -0.32 -15.21 16 21 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 22 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 23 N -0.90 -25.65 13.29 55.43 0.74 -24.91 16 24 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 28 H 0.10 1.70 6.53 -51.93 -0.34 1.36 16 29 H 0.12 2.37 4.03 -51.93 -0.21 2.16 16 30 H 0.08 1.10 8.04 -51.93 -0.42 0.68 16 31 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.13 1.02 7.00 -52.49 -0.37 0.65 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.40 7.68 -51.93 -0.40 0.00 16 35 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.10 0.14 8.14 -51.92 -0.42 -0.29 16 37 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.17 3.37 4.53 -52.48 -0.24 3.13 16 40 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 41 H 0.08 1.49 8.07 -51.93 -0.42 1.07 16 42 H 0.07 1.18 7.12 -51.93 -0.37 0.81 16 43 H 0.04 0.88 8.12 -51.93 -0.42 0.46 16 44 H 0.06 1.50 4.17 -51.93 -0.22 1.28 16 45 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 370.38 15.07 5.58 5.58 Total: -1.00 -36.54 370.38 -10.01 -46.54 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -5.90 Total: 1.79 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -2.48 Total: -19.72 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: 0.00 Total: -53.29 kcal Atomic # 8 Polarization: -54.23 SS G_CDS: -1.64 Total: -55.87 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 58.74 SS G_CDS: -0.54 Total: 58.19 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.54 -10.01 -46.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019625151.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.110 kcal (2) G-P(sol) polarization free energy of solvation -36.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds