Wall clock time and date at job start Tue Mar 31 2020 06:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47268 * 2 1 4 4 C 1.50705 * 109.46808 * 119.99886 * 2 1 3 5 5 C 1.38165 * 120.02863 * 299.97796 * 4 2 1 6 6 C 1.38243 * 120.05775 * 180.02562 * 5 4 2 7 7 C 1.38289 * 120.10796 * 0.02562 * 6 5 4 8 8 C 1.38127 * 120.05707 * 359.67814 * 7 6 5 9 9 C 1.38710 * 120.02869 * 119.99811 * 4 2 1 10 10 O 1.35901 * 120.05298 * 359.97438 * 9 4 2 11 11 C 1.42905 * 116.99899 * 174.53341 * 10 9 4 12 12 H 1.08999 * 109.47102 * 326.76214 * 11 10 9 13 13 C 1.52998 * 109.47159 * 86.76796 * 11 10 9 14 14 C 1.50705 * 109.46801 * 206.76711 * 11 10 9 15 15 O 1.21278 * 120.00310 * 0.02562 * 14 11 10 16 16 N 1.34782 * 119.99637 * 179.97438 * 14 11 10 17 17 C 1.39235 * 119.99859 * 185.11803 * 16 14 11 18 18 C 1.39483 * 119.82966 * 213.39521 * 17 16 14 19 19 C 1.36380 * 120.16429 * 179.75936 * 18 17 16 20 20 C 1.40863 * 119.83156 * 0.50885 * 19 18 17 21 21 C 1.41151 * 120.16851 * 179.72101 * 20 19 18 22 22 H 1.07993 * 120.00326 * 206.41895 * 21 20 19 23 23 C 1.39909 * 119.99443 * 26.41577 * 21 20 19 24 24 N 1.30869 * 120.00514 * 14.75859 * 23 21 20 25 25 Si 1.86804 * 119.99702 * 194.75331 * 23 21 20 26 26 H 1.48501 * 109.47176 * 90.00192 * 25 23 21 27 27 H 1.48496 * 109.47049 * 210.00445 * 25 23 21 28 28 H 1.48506 * 109.46978 * 330.00067 * 25 23 21 29 29 C 1.40868 * 119.67101 * 359.74168 * 20 19 18 30 30 C 1.36376 * 119.82848 * 359.97438 * 29 20 19 31 31 H 1.09004 * 109.47539 * 300.00503 * 1 2 3 32 32 H 1.09004 * 109.47112 * 59.99888 * 1 2 3 33 33 H 1.08998 * 109.47652 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47363 * 239.99977 * 2 1 3 35 35 H 1.08999 * 109.47075 * 179.97438 * 3 2 1 36 36 H 1.08995 * 109.47043 * 299.99888 * 3 2 1 37 37 H 1.09004 * 109.46996 * 59.99806 * 3 2 1 38 38 H 1.07998 * 119.97356 * 0.04902 * 5 4 2 39 39 H 1.07998 * 119.94884 * 179.97438 * 6 5 4 40 40 H 1.08005 * 119.97249 * 179.97438 * 7 6 5 41 41 H 1.08004 * 120.02860 * 180.32179 * 8 7 6 42 42 H 1.09003 * 109.46852 * 299.99601 * 13 11 10 43 43 H 1.08994 * 109.47188 * 59.99957 * 13 11 10 44 44 H 1.09003 * 109.46748 * 180.02562 * 13 11 10 45 45 H 0.97000 * 119.99741 * 5.11052 * 16 14 11 46 46 H 1.07996 * 119.91666 * 0.02562 * 18 17 16 47 47 H 1.08006 * 120.08130 * 180.24917 * 19 18 17 48 48 H 0.96994 * 120.00336 * 179.97438 * 24 23 21 49 49 H 1.07998 * 120.08897 * 179.97438 * 29 20 19 50 50 H 1.08008 * 119.91521 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 1.6992 -0.2386 2.4857 6 6 2.1600 -0.8895 3.6149 7 6 2.9557 -2.0138 3.4913 8 6 3.2865 -2.4930 2.2388 9 6 2.8297 -1.8383 1.1040 10 8 3.1586 -2.3044 -0.1295 11 6 4.0790 -3.3961 -0.1863 12 1 4.7913 -3.3138 0.6346 13 6 3.3135 -4.7154 -0.0672 14 6 4.8190 -3.3614 -1.4987 15 8 4.5819 -2.4876 -2.3057 16 7 5.7450 -4.3008 -1.7752 17 6 6.5039 -4.2091 -2.9390 18 6 6.9072 -5.3706 -3.5977 19 6 7.6464 -5.2885 -4.7408 20 6 8.0117 -4.0270 -5.2501 21 6 8.7817 -3.9340 -6.4294 22 1 9.4105 -3.0722 -6.5972 23 6 8.7301 -4.9584 -7.3810 24 7 7.7736 -5.8501 -7.3314 25 14 10.0267 -5.0530 -8.7224 26 1 11.1645 -5.8841 -8.2533 27 1 9.4358 -5.6646 -9.9397 28 1 10.5106 -3.6855 -9.0406 29 6 7.6050 -2.8587 -4.5763 30 6 6.8612 -2.9564 -3.4375 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 3.1300 1.4424 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6766 1.9563 0.8900 38 1 1.0779 0.6392 2.5848 39 1 1.8989 -0.5189 4.5951 40 1 3.3149 -2.5203 4.3750 41 1 3.9036 -3.3741 2.1429 42 1 2.7783 -4.7404 0.8821 43 1 2.6013 -4.7976 -0.8881 44 1 4.0157 -5.5480 -0.1100 45 1 5.8829 -5.0408 -1.1634 46 1 6.6297 -6.3371 -3.2039 47 1 7.9546 -6.1887 -5.2520 48 1 7.7377 -6.5601 -7.9914 49 1 7.8816 -1.8880 -4.9606 50 1 6.5490 -2.0615 -2.9196 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020046276.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:14 Heat of formation + Delta-G solvation = -37.061833 kcal Electronic energy + Delta-G solvation = -30380.507120 eV Core-core repulsion = 26337.301857 eV Total energy + Delta-G solvation = -4043.205263 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 353.178 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.83255 -39.61749 -37.92452 -36.98203 -35.47177 -34.51408 -33.21790 -31.94582 -30.33126 -29.62624 -29.41908 -28.80163 -27.20354 -25.51034 -24.44821 -23.65553 -22.42011 -21.47671 -20.79352 -20.29245 -19.51254 -18.32309 -17.53169 -17.28436 -16.20286 -16.08448 -15.69062 -15.62490 -15.21046 -14.67447 -14.56574 -14.36437 -14.03143 -13.95157 -13.76225 -13.45649 -13.21145 -13.03274 -12.78022 -12.54973 -12.53257 -12.30482 -12.18658 -12.11618 -11.94219 -11.82809 -11.64539 -11.40252 -11.23148 -11.18248 -11.15344 -10.99389 -10.76736 -10.69416 -10.62236 -9.99770 -9.61210 -9.41715 -9.16578 -9.01044 -8.93598 -8.25268 -7.58138 -7.00807 -6.75616 -4.33711 1.13858 1.27753 2.47659 2.71376 2.95648 3.05276 3.07335 3.09842 3.32479 3.58179 3.80237 3.91627 4.45363 4.56850 4.60202 4.62391 4.77193 4.79650 4.90616 4.99736 5.02181 5.15068 5.20137 5.29779 5.38047 5.43440 5.52426 5.53686 5.66540 5.70881 5.74273 5.86916 5.88439 5.97331 6.08043 6.15445 6.18896 6.21219 6.33564 6.38361 6.47956 6.60336 6.71324 6.87183 7.01371 7.14393 7.22848 7.28816 7.56073 7.67149 7.84275 8.00265 8.21280 8.24917 8.55771 8.67595 8.85755 8.95517 10.16628 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.019943 B = 0.001990 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.634899 B =14067.174192 C =14780.862460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.057 4.057 3 C -0.140 4.140 4 C -0.102 4.102 5 C -0.079 4.079 6 C -0.160 4.160 7 C -0.085 4.085 8 C -0.211 4.211 9 C 0.135 3.865 10 O -0.279 6.279 11 C 0.068 3.932 12 H 0.096 0.904 13 C -0.175 4.175 14 C 0.500 3.500 15 O -0.506 6.506 16 N -0.644 5.644 17 C -0.007 4.007 18 C -0.112 4.112 19 C -0.151 4.151 20 C 0.106 3.894 21 C -0.456 4.456 22 H 0.079 0.921 23 C 0.073 3.927 24 N -0.795 5.795 25 Si 0.911 3.089 26 H -0.268 1.268 27 H -0.278 1.278 28 H -0.262 1.262 29 C -0.214 4.214 30 C -0.076 4.076 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.126 0.874 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.129 0.871 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.395 0.605 46 H 0.091 0.909 47 H 0.123 0.877 48 H 0.281 0.719 49 H 0.096 0.904 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.561 3.850 19.526 22.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.076 4.076 3 C -0.198 4.198 4 C -0.103 4.103 5 C -0.097 4.097 6 C -0.178 4.178 7 C -0.103 4.103 8 C -0.230 4.230 9 C 0.089 3.911 10 O -0.191 6.191 11 C 0.008 3.992 12 H 0.114 0.886 13 C -0.232 4.232 14 C 0.285 3.715 15 O -0.380 6.380 16 N -0.289 5.289 17 C -0.099 4.099 18 C -0.132 4.132 19 C -0.171 4.171 20 C 0.103 3.897 21 C -0.486 4.486 22 H 0.097 0.903 23 C -0.145 4.145 24 N -0.420 5.420 25 Si 0.736 3.264 26 H -0.193 1.193 27 H -0.203 1.203 28 H -0.186 1.186 29 C -0.234 4.234 30 C -0.096 4.096 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.144 0.856 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.147 0.853 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.228 0.772 46 H 0.109 0.891 47 H 0.141 0.859 48 H 0.092 0.908 49 H 0.114 0.886 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.906 4.371 18.615 22.013 hybrid contribution 0.662 -0.766 -0.112 1.019 sum -10.244 3.605 18.503 21.454 Atomic orbital electron populations 1.21831 0.94540 1.01800 1.01555 1.20023 0.95539 0.95922 0.96068 1.21825 1.01431 0.95042 1.01480 1.19257 1.00444 0.94864 0.95727 1.20820 0.98660 0.99196 0.91026 1.21007 1.00965 0.97363 0.98457 1.20898 0.96950 0.95964 0.96536 1.21286 1.06130 1.03009 0.92564 1.18918 0.95042 0.93153 0.83967 1.86219 1.59347 1.48230 1.25329 1.22240 0.91892 0.87228 0.97876 0.88622 1.22324 1.01802 0.95080 1.04022 1.19963 0.80260 0.83593 0.87689 1.90741 1.63840 1.35662 1.47805 1.42840 1.36175 1.26624 1.23268 1.17118 1.06111 0.94459 0.92216 1.20211 1.01836 0.94546 0.96646 1.20924 1.02671 0.98586 0.94934 1.17682 0.89487 0.90857 0.91689 1.19578 1.22790 1.04399 1.01788 0.90327 1.25935 0.95199 0.94414 0.98926 1.69825 1.27085 1.12098 1.33006 0.86263 0.80998 0.79639 0.79537 1.19290 1.20308 1.18599 1.20670 1.06038 0.97429 0.99233 1.20247 0.97463 0.94927 0.96970 0.92853 0.92370 0.92703 0.88991 0.92513 0.92335 0.92909 0.85595 0.86122 0.85973 0.85308 0.90905 0.90522 0.90275 0.77174 0.89106 0.85922 0.90846 0.88615 0.88081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.01 37.16 0.33 -1.01 16 2 C -0.06 -0.66 3.06 -91.77 -0.28 -0.94 16 3 C -0.14 -1.45 9.01 37.16 0.33 -1.12 16 4 C -0.10 -1.20 4.79 -104.47 -0.50 -1.70 16 5 C -0.08 -0.76 8.71 -39.61 -0.34 -1.11 16 6 C -0.16 -1.40 10.04 -39.56 -0.40 -1.80 16 7 C -0.09 -0.77 10.04 -39.60 -0.40 -1.17 16 8 C -0.21 -2.20 8.33 -39.43 -0.33 -2.53 16 9 C 0.13 1.71 6.59 -39.22 -0.26 1.45 16 10 O -0.28 -4.14 8.09 -39.34 -0.32 -4.45 16 11 C 0.07 0.88 2.64 -27.88 -0.07 0.81 16 12 H 0.10 1.02 6.21 -51.93 -0.32 0.70 16 13 C -0.17 -1.76 9.11 37.16 0.34 -1.42 16 14 C 0.50 8.85 6.96 -10.98 -0.08 8.78 16 15 O -0.51 -11.43 14.16 -14.35 -0.20 -11.63 16 16 N -0.64 -11.06 5.23 -9.74 -0.05 -11.11 16 17 C -0.01 -0.16 6.29 -83.57 -0.53 -0.68 16 18 C -0.11 -2.52 9.89 -39.79 -0.39 -2.91 16 19 C -0.15 -3.84 8.62 -39.26 -0.34 -4.18 16 20 C 0.11 2.82 5.56 -106.80 -0.59 2.22 16 21 C -0.46 -12.04 9.04 -37.85 -0.34 -12.38 16 22 H 0.08 2.00 7.89 -52.49 -0.41 1.58 16 23 C 0.07 1.81 5.19 -17.34 -0.09 1.72 16 24 N -0.79 -20.38 10.89 55.55 0.61 -19.77 16 25 Si 0.91 18.54 29.58 -169.99 -5.03 13.51 16 26 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 27 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 28 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 29 C -0.21 -5.43 9.74 -39.26 -0.38 -5.82 16 30 C -0.08 -1.83 8.57 -39.79 -0.34 -2.17 16 31 H 0.05 0.43 7.39 -51.93 -0.38 0.05 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.09 1.32 6.99 -51.93 -0.36 0.96 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.46 7.39 -51.93 -0.38 0.07 16 38 H 0.13 0.97 7.10 -52.49 -0.37 0.60 16 39 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 41 H 0.13 1.11 5.50 -52.48 -0.29 0.83 16 42 H 0.07 0.62 7.10 -51.93 -0.37 0.25 16 43 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.08 0.63 7.46 -51.93 -0.39 0.25 16 45 H 0.39 5.09 8.09 -40.82 -0.33 4.76 16 46 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 47 H 0.12 3.18 6.18 -52.48 -0.32 2.86 16 48 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 49 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 50 H 0.10 2.42 6.41 -52.48 -0.34 2.08 16 LS Contribution 405.42 15.07 6.11 6.11 Total: -1.00 -31.34 405.42 -10.76 -42.10 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -7.21 Total: 11.22 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: -4.66 Total: -25.96 kcal Atomic # 7 Polarization: -31.44 SS G_CDS: 0.55 Total: -30.88 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.52 Total: -16.09 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.34 -10.76 -42.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020046276.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.034 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds