Wall clock time and date at job start Tue Mar 31 2020 05:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21260 * 119.99575 * 2 1 4 4 C 1.47160 * 119.99778 * 180.02562 * 2 1 3 5 5 C 1.39853 * 120.16672 * 180.02562 * 4 2 1 6 6 C 1.37889 * 119.82282 * 179.97438 * 5 4 2 7 7 C 1.38409 * 120.17218 * 359.97438 * 6 5 4 8 8 S 1.76204 * 119.82425 * 180.02562 * 7 6 5 9 9 O 1.42097 * 106.40294 * 336.45444 * 8 7 6 10 10 O 1.42102 * 106.39840 * 203.53991 * 8 7 6 11 11 N 1.65595 * 107.21757 * 89.99773 * 8 7 6 12 12 C 1.47081 * 120.87798 * 269.71642 * 11 8 7 13 13 C 1.53699 * 108.27500 * 128.76033 * 12 11 8 14 14 N 1.46905 * 109.25765 * 54.07950 * 13 12 11 15 15 C 1.46902 * 111.00177 * 172.60850 * 14 13 12 16 16 C 1.50698 * 109.47038 * 59.38411 * 15 14 13 17 17 H 1.08005 * 119.99741 * 5.01542 * 16 15 14 18 18 C 1.37870 * 119.99943 * 185.01923 * 16 15 14 19 19 N 1.31513 * 120.00012 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00003 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47385 * 89.99919 * 20 18 16 22 22 H 1.48503 * 109.47203 * 209.99997 * 20 18 16 23 23 H 1.48501 * 109.47154 * 329.99659 * 20 18 16 24 24 C 1.46898 * 111.26712 * 296.76039 * 14 13 12 25 25 C 1.47083 * 120.88423 * 90.00116 * 11 8 7 26 26 C 1.38403 * 120.35032 * 0.27293 * 7 6 5 27 27 C 1.37895 * 120.16601 * 359.49290 * 26 7 6 28 28 H 1.09001 * 109.47401 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47073 * 299.99981 * 1 2 3 30 30 H 1.09005 * 109.47302 * 59.99561 * 1 2 3 31 31 H 1.08000 * 120.09237 * 359.95420 * 5 4 2 32 32 H 1.07995 * 119.91546 * 179.97438 * 6 5 4 33 33 H 1.09001 * 109.62627 * 248.52375 * 12 11 8 34 34 H 1.08991 * 109.63088 * 9.10692 * 12 11 8 35 35 H 1.08998 * 109.64662 * 294.07900 * 13 12 11 36 36 H 1.09000 * 109.42488 * 173.94560 * 13 12 11 37 37 H 1.08997 * 109.46893 * 179.38232 * 15 14 13 38 38 H 1.09005 * 109.46667 * 299.38528 * 15 14 13 39 39 H 0.97009 * 119.99894 * 180.02562 * 19 18 16 40 40 H 1.08996 * 109.49613 * 303.14190 * 24 14 13 41 41 H 1.09000 * 109.49044 * 183.06261 * 24 14 13 42 42 H 1.09002 * 109.62401 * 350.89558 * 25 11 8 43 43 H 1.09001 * 109.62772 * 111.47138 * 25 11 8 44 44 H 1.07994 * 119.91678 * 179.72217 * 26 7 6 45 45 H 1.08004 * 120.08193 * 180.22919 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0502 0.0000 4 6 2.2428 -1.2745 -0.0006 5 6 3.6413 -1.2786 0.0000 6 6 4.3235 -2.4769 0.0000 7 6 3.6278 -3.6734 0.0000 8 16 4.5089 -5.1994 0.0006 9 8 5.7919 -4.9221 -0.5435 10 8 3.6274 -6.1718 -0.5439 11 7 4.7534 -5.6235 1.5826 12 6 5.9611 -5.1908 2.3021 13 6 5.5266 -4.5381 3.6240 14 7 4.6638 -5.4691 4.3635 15 6 4.3682 -4.9577 5.7085 16 6 3.6770 -3.6232 5.5978 17 1 3.4045 -3.2351 4.6274 18 6 3.3925 -2.8978 6.7352 19 7 3.7249 -3.3702 7.9167 20 14 2.5350 -1.2440 6.5981 21 1 1.0645 -1.4423 6.6569 22 1 2.9619 -0.3704 7.7206 23 1 2.8970 -0.6042 5.3078 24 6 3.4264 -5.7507 3.6236 25 6 3.7718 -6.4480 2.3036 26 6 2.2438 -3.6777 -0.0057 27 6 1.5472 -2.4877 -0.0009 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 4.1855 -0.3458 0.0001 32 1 5.4034 -2.4818 0.0000 33 1 6.5941 -6.0541 2.5071 34 1 6.5080 -4.4674 1.6975 35 1 4.9771 -3.6200 3.4162 36 1 6.4086 -4.3072 4.2214 37 1 3.7191 -5.6610 6.2300 38 1 5.2982 -4.8402 6.2649 39 1 3.5244 -2.8599 8.7170 40 1 2.9060 -4.8158 3.4158 41 1 2.7853 -6.3993 4.2206 42 1 2.8707 -6.5563 1.6998 43 1 4.1985 -7.4298 2.5087 44 1 1.7081 -4.6154 -0.0102 45 1 0.4671 -2.4926 -0.0016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020059771.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:19 Heat of formation + Delta-G solvation = -66.874589 kcal Electronic energy + Delta-G solvation = -30017.076323 eV Core-core repulsion = 25934.074706 eV Total energy + Delta-G solvation = -4083.001617 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 352.129 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.31116 -38.47844 -38.38308 -37.36574 -35.92720 -34.53907 -32.58283 -32.30018 -31.44284 -30.73825 -29.72296 -27.75726 -25.07866 -24.60045 -23.35360 -22.95310 -22.11282 -20.45854 -20.04675 -18.93435 -18.24915 -17.49874 -16.74880 -16.37097 -16.34958 -15.61611 -15.33189 -15.14763 -14.93598 -14.55124 -14.45523 -14.23294 -14.19667 -13.95603 -13.93438 -13.53423 -13.19774 -13.11865 -12.57819 -12.50046 -12.45548 -12.38271 -12.14688 -11.88020 -11.75325 -11.50704 -11.25866 -11.22932 -11.06766 -11.03917 -10.70657 -10.59426 -10.30171 -10.12074 -9.95106 -9.76985 -9.62954 -9.35163 -8.90785 -8.52870 -7.30990 -6.12561 -4.22095 -0.08696 0.36357 1.02192 1.88478 2.85618 3.18225 3.26720 3.28638 3.31347 3.63210 3.69465 4.10378 4.31242 4.41097 4.53984 4.65686 4.75423 4.89749 4.92666 5.03141 5.06923 5.10301 5.17833 5.33120 5.40058 5.48798 5.51842 5.62520 5.73164 5.75832 5.76754 5.77150 5.81331 5.94226 6.05285 6.15106 6.42653 6.45786 6.53538 6.64664 6.69432 7.11964 7.15242 7.42153 7.79566 7.91073 8.14875 8.17953 8.87945 9.45428 10.92462 Molecular weight = 352.13amu Principal moments of inertia in cm(-1) A = 0.007183 B = 0.005452 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3897.046247 B = 5134.600205 C = 8075.790702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.392 3.608 3 O -0.450 6.450 4 C -0.121 4.121 5 C -0.082 4.082 6 C -0.029 4.029 7 C -0.649 4.649 8 S 2.690 3.310 9 O -0.956 6.956 10 O -0.956 6.956 11 N -0.991 5.991 12 C 0.123 3.877 13 C 0.050 3.950 14 N -0.537 5.537 15 C 0.188 3.812 16 C -0.551 4.551 17 H 0.055 0.945 18 C 0.068 3.932 19 N -0.888 5.888 20 Si 0.885 3.115 21 H -0.280 1.280 22 H -0.284 1.284 23 H -0.276 1.276 24 C 0.048 3.952 25 C 0.125 3.875 26 C -0.031 4.031 27 C -0.096 4.096 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.043 0.957 36 H 0.079 0.921 37 H 0.029 0.971 38 H 0.036 0.964 39 H 0.263 0.737 40 H 0.041 0.959 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.147 0.853 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.846 -0.607 -16.285 16.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.270 3.730 3 O -0.324 6.324 4 C -0.122 4.122 5 C -0.101 4.101 6 C -0.048 4.048 7 C -0.734 4.734 8 S 2.779 3.221 9 O -0.946 6.946 10 O -0.946 6.946 11 N -0.830 5.830 12 C -0.002 4.002 13 C -0.080 4.080 14 N -0.262 5.262 15 C 0.062 3.938 16 C -0.590 4.590 17 H 0.073 0.927 18 C -0.135 4.135 19 N -0.527 5.527 20 Si 0.712 3.288 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.201 1.201 24 C -0.082 4.082 25 C -0.001 4.001 26 C -0.050 4.050 27 C -0.115 4.115 28 H 0.105 0.895 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.160 0.840 32 H 0.164 0.836 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.164 0.836 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.007 -0.911 -16.762 17.054 hybrid contribution -1.441 2.446 0.474 2.879 sum -4.449 1.535 -16.288 16.954 Atomic orbital electron populations 1.22262 0.93189 1.05209 1.05292 1.22620 0.92017 0.87433 0.70950 1.90557 1.72134 1.34189 1.35561 1.20879 0.94908 0.95170 1.01251 1.21546 0.93289 0.99044 0.96222 1.20924 1.00622 0.90763 0.92483 1.31469 1.06735 1.21128 1.14064 1.02118 0.73594 0.73594 0.72770 1.93573 1.38953 1.85675 1.76396 1.93569 1.67205 1.57458 1.76407 1.57651 1.30314 1.64452 1.30624 1.21828 0.84960 0.99918 0.93480 1.22319 0.98191 0.94467 0.93001 1.62414 1.14774 1.44326 1.04638 1.19773 0.96916 0.93389 0.83707 1.21713 1.39533 1.05019 0.92745 0.92658 1.24929 0.95521 0.97708 0.95380 1.69931 1.46672 1.38410 0.97648 0.86717 0.79968 0.84262 0.77815 1.20617 1.21011 1.20054 1.22256 0.93282 0.99445 0.93230 1.21708 0.90643 0.94317 0.93392 1.20904 0.92002 0.99388 0.92733 1.21624 1.00593 0.91350 0.97889 0.89499 0.88305 0.88472 0.83984 0.83597 0.90260 0.89818 0.93834 0.90289 0.95288 0.94558 0.92717 0.94094 0.90341 0.89844 0.90283 0.83561 0.83827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.50 10.19 36.01 0.37 -1.13 16 2 C 0.39 4.52 7.23 -30.69 -0.22 4.29 16 3 O -0.45 -6.62 17.09 5.57 0.10 -6.52 16 4 C -0.12 -1.45 5.87 -105.07 -0.62 -2.06 16 5 C -0.08 -1.04 9.60 -39.11 -0.38 -1.42 16 6 C -0.03 -0.36 9.50 -39.65 -0.38 -0.74 16 7 C -0.65 -8.30 5.98 -39.46 -0.24 -8.54 16 8 S 2.69 36.40 5.69 -107.50 -0.61 35.79 16 9 O -0.96 -14.53 16.03 -57.17 -0.92 -15.45 16 10 O -0.96 -14.18 16.04 -57.17 -0.92 -15.10 16 11 N -0.99 -13.62 3.32 -112.97 -0.38 -13.99 16 12 C 0.12 1.72 6.56 -3.36 -0.02 1.70 16 13 C 0.05 0.88 5.17 -3.46 -0.02 0.86 16 14 N -0.54 -10.36 4.83 -235.47 -1.14 -11.50 16 15 C 0.19 4.49 5.11 -4.98 -0.03 4.46 16 16 C -0.55 -14.24 7.75 -34.44 -0.27 -14.51 16 17 H 0.06 1.42 5.88 -52.48 -0.31 1.11 16 18 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 19 N -0.89 -25.17 13.29 55.43 0.74 -24.43 16 20 Si 0.88 20.83 29.54 -169.99 -5.02 15.81 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C 0.05 0.81 5.24 -3.71 -0.02 0.79 16 25 C 0.12 1.69 6.53 -3.60 -0.02 1.67 16 26 C -0.03 -0.36 9.50 -39.65 -0.38 -0.73 16 27 C -0.10 -0.99 9.45 -39.11 -0.37 -1.36 16 28 H 0.09 0.46 5.61 -51.93 -0.29 0.17 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.14 1.68 7.65 -52.49 -0.40 1.28 16 32 H 0.15 1.61 7.60 -52.49 -0.40 1.22 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 1.03 7.21 -51.93 -0.37 0.65 16 35 H 0.04 0.83 6.79 -51.93 -0.35 0.48 16 36 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 37 H 0.03 0.74 8.07 -51.93 -0.42 0.32 16 38 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.04 0.75 6.92 -51.93 -0.36 0.39 16 41 H 0.08 1.30 8.05 -51.93 -0.42 0.89 16 42 H 0.08 0.97 7.22 -51.93 -0.37 0.60 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.15 1.40 7.59 -52.49 -0.40 1.00 16 45 H 0.14 0.98 5.93 -52.48 -0.31 0.67 16 LS Contribution 377.94 15.07 5.70 5.70 Total: -1.00 -33.30 377.94 -11.21 -44.51 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.08 Total: 0.19 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -2.68 Total: -15.00 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: -0.78 Total: -49.92 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -1.74 Total: -37.07 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 36.40 SS G_CDS: -0.61 Total: 35.79 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.30 -11.21 -44.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020059771.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.366 kcal (2) G-P(sol) polarization free energy of solvation -33.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds