Wall clock time and date at job start Tue Mar 31 2020 06:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47111 * 2 1 4 4 H 1.08996 * 109.47179 * 304.99396 * 3 2 1 5 5 O 1.42898 * 109.47108 * 64.99929 * 3 2 1 6 6 C 1.35902 * 116.99938 * 267.16236 * 5 3 2 7 7 C 1.38746 * 120.05331 * 355.98559 * 6 5 3 8 8 C 1.38128 * 119.94350 * 180.02562 * 7 6 5 9 9 C 1.50697 * 119.97155 * 179.97438 * 8 7 6 10 10 C 1.38288 * 120.05324 * 0.02562 * 8 7 6 11 11 C 1.38241 * 120.11181 * 359.70470 * 10 8 7 12 12 C 1.38163 * 120.05517 * 0.55300 * 11 10 8 13 13 C 1.50704 * 120.02629 * 179.75317 * 12 11 10 14 14 C 1.50706 * 109.46853 * 184.99856 * 3 2 1 15 15 O 1.21285 * 119.99596 * 244.99668 * 14 3 2 16 16 N 1.34768 * 120.00216 * 65.00238 * 14 3 2 17 17 C 1.39238 * 120.00075 * 185.21788 * 16 14 3 18 18 C 1.39484 * 119.83304 * 213.92485 * 17 16 14 19 19 C 1.36370 * 120.17108 * 179.75913 * 18 17 16 20 20 C 1.40869 * 119.82654 * 0.50516 * 19 18 17 21 21 C 1.41157 * 120.16432 * 179.72016 * 20 19 18 22 22 H 1.08000 * 119.99512 * 210.66885 * 21 20 19 23 23 C 1.39900 * 119.99886 * 30.66932 * 21 20 19 24 24 N 1.30867 * 120.00068 * 9.00515 * 23 21 20 25 25 Si 1.86805 * 119.99816 * 189.00760 * 23 21 20 26 26 H 1.48500 * 109.47326 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47074 * 119.99941 * 25 23 21 28 28 H 1.48491 * 109.46892 * 239.99617 * 25 23 21 29 29 C 1.40870 * 119.67048 * 359.74952 * 20 19 18 30 30 C 1.36369 * 119.82923 * 359.97438 * 29 20 19 31 31 H 1.09003 * 109.47037 * 60.00182 * 1 2 3 32 32 H 1.09003 * 109.47211 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47456 * 300.00356 * 1 2 3 34 34 H 1.09000 * 109.47305 * 239.99995 * 2 1 3 35 35 H 1.09003 * 109.47037 * 119.99818 * 2 1 3 36 36 H 1.08001 * 120.03356 * 359.97438 * 7 6 5 37 37 H 1.09004 * 109.46999 * 90.00357 * 9 8 7 38 38 H 1.09002 * 109.47004 * 209.99963 * 9 8 7 39 39 H 1.09000 * 109.47626 * 329.99918 * 9 8 7 40 40 H 1.08003 * 119.94310 * 180.02562 * 10 8 7 41 41 H 1.08000 * 119.97272 * 180.27844 * 11 10 8 42 42 H 1.09008 * 109.46345 * 269.71665 * 13 12 11 43 43 H 1.09005 * 109.47018 * 149.72226 * 13 12 11 44 44 H 1.08988 * 109.47573 * 29.71574 * 13 12 11 45 45 H 0.97004 * 120.00384 * 5.21195 * 16 14 3 46 46 H 1.08007 * 119.91509 * 0.02562 * 18 17 16 47 47 H 1.07995 * 120.08716 * 180.25337 * 19 18 17 48 48 H 0.97002 * 119.99811 * 180.02562 * 24 23 21 49 49 H 1.08000 * 120.08440 * 179.97438 * 29 20 19 50 50 H 1.08003 * 119.91711 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6619 2.0814 1.2210 6 6 0.4921 2.7731 1.2190 7 6 -0.2347 2.9057 0.0445 8 6 -1.4231 3.6097 0.0449 9 6 -2.2127 3.7546 -1.2305 10 6 -1.8884 4.1824 1.2144 11 6 -1.1690 4.0469 2.3871 12 6 0.0230 3.3483 2.3908 13 6 0.8096 3.2058 3.6683 14 6 3.5419 1.4443 -0.1238 15 8 4.2250 1.8611 0.7876 16 7 4.1260 0.9828 -1.2472 17 6 5.5129 0.8827 -1.3202 18 6 6.1618 1.1072 -2.5343 19 6 7.5202 1.0159 -2.6126 20 6 8.2673 0.6833 -1.4655 21 6 9.6732 0.5810 -1.5398 22 1 10.1993 -0.1068 -0.8944 23 6 10.3849 1.3706 -2.4493 24 7 9.7750 2.3255 -3.1041 25 14 12.2059 1.0618 -2.7290 26 1 12.6541 -0.0656 -1.8727 27 1 12.4369 0.7224 -4.1561 28 1 12.9744 2.2836 -2.3802 29 6 7.6043 0.4528 -0.2442 30 6 6.2458 0.5534 -0.1802 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.1289 2.4597 -0.8694 37 1 -2.9148 2.9255 -1.3193 38 1 -2.7622 4.6958 -1.2126 39 1 -1.5322 3.7473 -2.0820 40 1 -2.8181 4.7321 1.2128 41 1 -1.5367 4.4913 3.3001 42 1 1.5113 4.0353 3.7574 43 1 1.3595 2.2647 3.6534 44 1 0.1272 3.2144 4.5181 45 1 3.5803 0.7202 -2.0050 46 1 5.5874 1.3583 -3.4138 47 1 8.0216 1.1940 -3.5523 48 1 10.2684 2.8727 -3.7350 49 1 8.1704 0.1970 0.6393 50 1 5.7360 0.3765 0.7553 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020452739.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:08 Heat of formation + Delta-G solvation = -35.658189 kcal Electronic energy + Delta-G solvation = -30571.301275 eV Core-core repulsion = 26528.156878 eV Total energy + Delta-G solvation = -4043.144397 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 353.178 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.95809 -39.58773 -37.97511 -37.00712 -34.60112 -34.35167 -33.37330 -32.76381 -30.42421 -29.64363 -29.39403 -29.15136 -27.57660 -25.05718 -24.74327 -23.30010 -22.21834 -21.42321 -21.24060 -20.68495 -19.55275 -17.95912 -17.49372 -17.24671 -16.19484 -16.14863 -15.77502 -15.59734 -15.19744 -14.68511 -14.59720 -14.14307 -13.97958 -13.94250 -13.76512 -13.43572 -13.11173 -13.01285 -12.87662 -12.75740 -12.67964 -12.39304 -12.14640 -12.07658 -11.99754 -11.82452 -11.74939 -11.51740 -11.40609 -11.32852 -11.18005 -11.04241 -10.97842 -10.75334 -10.61001 -9.95841 -9.56785 -9.43301 -9.18556 -8.94391 -8.82787 -8.13576 -7.58753 -6.95532 -6.71078 -4.34619 1.13217 1.28963 2.44794 2.75581 2.94606 3.05292 3.07873 3.13192 3.30347 3.53648 3.80988 3.94175 4.43407 4.52165 4.57898 4.63190 4.66270 4.80246 4.87020 4.95330 5.00659 5.12306 5.21190 5.32015 5.37393 5.41302 5.47480 5.52975 5.54156 5.64869 5.68686 5.69043 5.81026 5.83340 5.99579 6.14319 6.14881 6.18003 6.34635 6.37444 6.41373 6.63799 6.70247 6.86626 7.02352 7.15102 7.23082 7.29851 7.56751 7.66979 7.83224 8.01320 8.19901 8.25653 8.56681 8.67499 8.87536 8.95524 10.22324 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.019761 B = 0.002007 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.613105 B =13949.938600 C =14177.056154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.139 4.139 3 C 0.067 3.933 4 H 0.098 0.902 5 O -0.276 6.276 6 C 0.139 3.861 7 C -0.209 4.209 8 C -0.054 4.054 9 C -0.115 4.115 10 C -0.159 4.159 11 C -0.080 4.080 12 C -0.121 4.121 13 C -0.106 4.106 14 C 0.499 3.501 15 O -0.506 6.506 16 N -0.645 5.645 17 C -0.001 4.001 18 C -0.115 4.115 19 C -0.145 4.145 20 C 0.105 3.895 21 C -0.458 4.458 22 H 0.078 0.922 23 C 0.071 3.929 24 N -0.802 5.802 25 Si 0.912 3.088 26 H -0.261 1.261 27 H -0.273 1.273 28 H -0.275 1.275 29 C -0.209 4.209 30 C -0.079 4.079 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.131 0.869 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.121 0.879 41 H 0.127 0.873 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.395 0.605 46 H 0.091 0.909 47 H 0.123 0.877 48 H 0.279 0.721 49 H 0.096 0.904 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.976 0.157 2.681 23.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.177 4.177 3 C 0.007 3.993 4 H 0.115 0.885 5 O -0.188 6.188 6 C 0.093 3.907 7 C -0.228 4.228 8 C -0.054 4.054 9 C -0.172 4.172 10 C -0.177 4.177 11 C -0.098 4.098 12 C -0.122 4.122 13 C -0.163 4.163 14 C 0.283 3.717 15 O -0.380 6.380 16 N -0.290 5.290 17 C -0.093 4.093 18 C -0.135 4.135 19 C -0.165 4.165 20 C 0.103 3.897 21 C -0.488 4.488 22 H 0.096 0.904 23 C -0.145 4.145 24 N -0.429 5.429 25 Si 0.737 3.263 26 H -0.185 1.185 27 H -0.198 1.198 28 H -0.200 1.200 29 C -0.229 4.229 30 C -0.098 4.098 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.148 0.852 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.139 0.861 41 H 0.145 0.855 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.228 0.772 46 H 0.109 0.891 47 H 0.141 0.859 48 H 0.090 0.910 49 H 0.115 0.885 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -22.295 0.609 3.364 22.555 hybrid contribution 0.464 -0.018 -0.840 0.959 sum -21.831 0.592 2.524 21.985 Atomic orbital electron populations 1.21949 0.94583 1.02339 1.02368 1.22004 0.97098 0.94181 1.04397 1.22370 0.93920 0.94960 0.88098 0.88496 1.86232 1.35464 1.63425 1.33672 1.18854 0.85814 0.92243 0.93743 1.21161 0.97719 1.06203 0.97671 1.19638 0.94323 0.95887 0.95565 1.20806 0.99580 1.02364 0.94422 1.20876 1.01044 1.03366 0.92434 1.20840 0.93446 0.97284 0.98263 1.19268 0.96977 1.01818 0.94145 1.20614 0.99210 1.03320 0.93107 1.20056 0.88524 0.79149 0.83937 1.90745 1.64224 1.44200 1.38833 1.42851 1.06723 1.63686 1.15748 1.17144 0.80217 1.15808 0.96159 1.20234 0.95272 1.03208 0.94812 1.20942 0.91271 1.04870 0.99368 1.17702 0.93478 0.88425 0.90140 1.19576 0.91872 1.19968 1.17413 0.90383 1.25906 1.01030 0.93592 0.94005 1.69808 1.38175 1.14193 1.20709 0.86196 0.81883 0.79316 0.78917 1.18475 1.19826 1.20003 1.20725 0.93247 1.11801 0.97133 1.20244 0.94176 0.99295 0.96133 0.92339 0.92015 0.92031 0.89650 0.89993 0.85155 0.91053 0.91412 0.91529 0.86143 0.85525 0.91260 0.90911 0.91943 0.77170 0.89073 0.85887 0.91010 0.88544 0.88072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 8.44 37.15 0.31 -1.04 16 2 C -0.14 -1.46 5.61 -26.73 -0.15 -1.61 16 3 C 0.07 0.88 2.58 -27.88 -0.07 0.81 16 4 H 0.10 1.06 5.38 -51.93 -0.28 0.78 16 5 O -0.28 -4.12 8.27 -39.29 -0.32 -4.44 16 6 C 0.14 1.79 5.22 -39.22 -0.20 1.59 16 7 C -0.21 -2.26 6.75 -39.43 -0.27 -2.53 16 8 C -0.05 -0.51 5.88 -104.65 -0.62 -1.13 16 9 C -0.12 -0.79 10.01 36.00 0.36 -0.43 16 10 C -0.16 -1.47 9.70 -39.56 -0.38 -1.85 16 11 C -0.08 -0.79 9.70 -39.61 -0.38 -1.18 16 12 C -0.12 -1.45 5.89 -104.47 -0.62 -2.07 16 13 C -0.11 -1.19 9.79 36.01 0.35 -0.83 16 14 C 0.50 8.86 6.90 -10.99 -0.08 8.79 16 15 O -0.51 -11.50 14.22 -14.31 -0.20 -11.70 16 16 N -0.65 -11.06 5.19 -9.74 -0.05 -11.11 16 17 C 0.00 -0.03 6.27 -83.57 -0.52 -0.55 16 18 C -0.12 -2.59 9.89 -39.79 -0.39 -2.98 16 19 C -0.14 -3.68 8.59 -39.26 -0.34 -4.02 16 20 C 0.11 2.81 5.54 -106.80 -0.59 2.22 16 21 C -0.46 -12.15 9.04 -37.85 -0.34 -12.49 16 22 H 0.08 1.99 7.86 -52.49 -0.41 1.58 16 23 C 0.07 1.78 5.27 -17.34 -0.09 1.69 16 24 N -0.80 -20.79 10.87 55.55 0.60 -20.19 16 25 Si 0.91 18.74 29.57 -169.99 -5.03 13.72 16 26 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 27 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 28 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 29 C -0.21 -5.30 9.74 -39.26 -0.38 -5.69 16 30 C -0.08 -1.88 8.57 -39.79 -0.34 -2.22 16 31 H 0.06 0.44 6.81 -51.93 -0.35 0.09 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.62 6.20 -51.93 -0.32 0.30 16 34 H 0.09 0.76 7.93 -51.93 -0.41 0.35 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.13 1.23 4.60 -52.49 -0.24 0.99 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 39 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 40 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 41 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 43 H 0.07 0.91 7.53 -51.93 -0.39 0.52 16 44 H 0.06 0.55 8.08 -51.94 -0.42 0.13 16 45 H 0.39 5.09 8.70 -40.82 -0.36 4.74 16 46 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 47 H 0.12 3.21 6.29 -52.49 -0.33 2.88 16 48 H 0.28 6.57 8.30 -40.82 -0.34 6.24 16 49 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 50 H 0.10 2.40 6.45 -52.48 -0.34 2.06 16 LS Contribution 403.94 15.07 6.09 6.09 Total: -1.00 -31.69 403.94 -10.87 -42.56 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -7.21 Total: 10.61 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: -4.74 Total: -25.52 kcal Atomic # 7 Polarization: -31.86 SS G_CDS: 0.55 Total: -31.30 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.53 Total: -16.14 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.69 -10.87 -42.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020452739.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.898 kcal (2) G-P(sol) polarization free energy of solvation -31.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds