Wall clock time and date at job start Tue Mar 31 2020 06:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47162 * 2 1 4 4 H 1.08998 * 109.47350 * 55.00342 * 3 2 1 5 5 O 1.42895 * 109.47082 * 294.99776 * 3 2 1 6 6 C 1.35907 * 116.99847 * 94.45780 * 5 3 2 7 7 C 1.38753 * 120.05388 * 4.65944 * 6 5 3 8 8 C 1.38124 * 119.94327 * 179.69754 * 7 6 5 9 9 C 1.50696 * 119.97483 * 180.29919 * 8 7 6 10 10 C 1.38293 * 120.05409 * 0.60116 * 8 7 6 11 11 C 1.38245 * 120.10974 * 359.67685 * 10 8 7 12 12 C 1.38168 * 120.05717 * 0.02562 * 11 10 8 13 13 C 1.50702 * 120.02797 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.46987 * 175.00071 * 3 2 1 15 15 O 1.21277 * 119.99777 * 119.99640 * 14 3 2 16 16 N 1.34773 * 119.99814 * 300.00005 * 14 3 2 17 17 C 1.39245 * 119.99842 * 174.33734 * 16 14 3 18 18 C 1.39483 * 119.83236 * 325.32238 * 17 16 14 19 19 C 1.36375 * 120.16680 * 180.23756 * 18 17 16 20 20 C 1.40874 * 119.82982 * 359.48868 * 19 18 17 21 21 C 1.41141 * 120.16500 * 180.25702 * 20 19 18 22 22 H 1.07998 * 120.00365 * 34.58306 * 21 20 19 23 23 C 1.39905 * 120.00317 * 214.58356 * 21 20 19 24 24 N 1.30877 * 119.99799 * 5.49011 * 23 21 20 25 25 Si 1.86799 * 120.00347 * 185.49013 * 23 21 20 26 26 H 1.48494 * 109.47086 * 90.00024 * 25 23 21 27 27 H 1.48505 * 109.47117 * 209.99815 * 25 23 21 28 28 H 1.48497 * 109.47174 * 329.99712 * 25 23 21 29 29 C 1.40867 * 119.66711 * 0.50629 * 20 19 18 30 30 C 1.36378 * 119.83368 * 359.75356 * 29 20 19 31 31 H 1.08998 * 109.47207 * 59.99797 * 1 2 3 32 32 H 1.08995 * 109.47374 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46710 * 300.00350 * 1 2 3 34 34 H 1.08997 * 109.46885 * 239.99991 * 2 1 3 35 35 H 1.08998 * 109.47207 * 120.00203 * 2 1 3 36 36 H 1.07998 * 120.02863 * 359.97438 * 7 6 5 37 37 H 1.09004 * 109.47247 * 270.30419 * 9 8 7 38 38 H 1.09001 * 109.47099 * 30.30049 * 9 8 7 39 39 H 1.09000 * 109.47198 * 150.30384 * 9 8 7 40 40 H 1.07997 * 119.94728 * 179.70036 * 10 8 7 41 41 H 1.07997 * 119.97436 * 180.02562 * 11 10 8 42 42 H 1.08995 * 109.47449 * 270.02660 * 13 12 11 43 43 H 1.09005 * 109.46788 * 30.02653 * 13 12 11 44 44 H 1.09003 * 109.46848 * 150.01955 * 13 12 11 45 45 H 0.96996 * 120.00416 * 354.33879 * 16 14 3 46 46 H 1.07995 * 119.91546 * 359.95160 * 18 17 16 47 47 H 1.07998 * 120.08103 * 179.74741 * 19 18 17 48 48 H 0.96995 * 120.00336 * 180.02562 * 24 23 21 49 49 H 1.08004 * 120.08193 * 179.72518 * 29 20 19 50 50 H 1.08001 * 119.91824 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 0.8418 5 8 1.6620 2.0813 -1.2210 6 6 0.5093 2.8012 -1.2096 7 6 -0.1921 2.9712 -0.0245 8 6 -1.3601 3.7085 -0.0143 9 6 -2.1188 3.8992 1.2736 10 6 -1.8371 4.2664 -1.1863 11 6 -1.1432 4.0936 -2.3694 12 6 0.0289 3.3621 -2.3837 13 6 0.7845 3.1736 -3.6739 14 6 3.5419 1.4443 0.1238 15 8 4.2216 1.9434 -0.7478 16 7 4.1297 0.8911 1.2031 17 6 5.5169 0.7865 1.2634 18 6 6.2457 0.5438 0.0992 19 6 7.6042 0.4354 0.1511 20 6 8.2721 0.5799 1.3830 21 6 9.6782 0.4744 1.4440 22 1 10.2827 0.8316 0.6234 23 6 10.2891 -0.0928 2.5676 24 7 9.5560 -0.6227 3.5135 25 14 12.1511 -0.0939 2.7178 26 1 12.5925 1.1432 3.4105 27 1 12.5840 -1.2801 3.4993 28 1 12.7569 -0.1457 1.3630 29 6 7.5291 0.8250 2.5544 30 6 6.1707 0.9256 2.4876 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 0.1773 2.5313 0.8900 37 1 -2.8381 3.0893 1.3950 38 1 -1.4207 3.8937 2.1108 39 1 -2.6463 4.8527 1.2467 40 1 -2.7531 4.8385 -1.1773 41 1 -1.5175 4.5307 -3.2833 42 1 0.4300 2.2726 -4.1744 43 1 0.6212 4.0363 -4.3200 44 1 1.8490 3.0760 -3.4606 45 1 3.5865 0.5657 1.9379 46 1 5.7326 0.4368 -0.8450 47 1 8.1668 0.2433 -0.7506 48 1 9.9795 -1.0156 4.2926 49 1 8.0339 0.9325 3.5031 50 1 5.5996 1.1131 3.3849 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020452741.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:12 Heat of formation + Delta-G solvation = -36.023732 kcal Electronic energy + Delta-G solvation = -30537.323164 eV Core-core repulsion = 26494.162916 eV Total energy + Delta-G solvation = -4043.160248 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 353.178 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.95995 -39.60696 -37.98742 -37.02059 -34.62734 -34.33407 -33.39477 -32.74349 -30.40759 -29.65651 -29.40288 -29.16532 -27.60037 -25.06460 -24.74008 -23.27743 -22.23735 -21.44174 -21.25296 -20.71205 -19.55664 -17.97534 -17.51207 -17.24861 -16.22756 -16.14997 -15.73444 -15.61263 -15.17703 -14.70045 -14.60923 -14.11797 -14.00687 -13.95621 -13.80926 -13.48099 -13.12043 -13.02616 -12.87681 -12.73348 -12.69606 -12.40463 -12.18237 -12.06598 -12.00453 -11.81798 -11.72091 -11.54475 -11.50431 -11.34052 -11.17292 -11.03957 -10.94061 -10.64654 -10.55371 -10.05526 -9.80533 -9.36516 -9.21382 -8.86101 -8.80735 -8.14912 -7.60237 -6.93887 -6.70028 -4.35246 1.12009 1.27871 2.41430 2.76920 2.95582 3.03964 3.08610 3.12232 3.28866 3.51856 3.79764 3.95770 4.42001 4.50956 4.57239 4.62528 4.66156 4.79576 4.86705 4.94381 5.00142 5.11962 5.20934 5.31301 5.36627 5.40656 5.46731 5.52088 5.54178 5.62768 5.64701 5.69006 5.80449 5.83241 5.99446 6.13269 6.13603 6.17329 6.33909 6.34841 6.40384 6.62615 6.67932 6.85263 7.01810 7.14758 7.22624 7.28661 7.56330 7.65094 7.80936 8.01840 8.17441 8.25155 8.55925 8.65913 8.88185 8.94992 10.25666 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.021733 B = 0.001981 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.049534 B =14132.102186 C =14580.293380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.139 4.139 3 C 0.066 3.934 4 H 0.099 0.901 5 O -0.276 6.276 6 C 0.140 3.860 7 C -0.210 4.210 8 C -0.053 4.053 9 C -0.115 4.115 10 C -0.159 4.159 11 C -0.080 4.080 12 C -0.122 4.122 13 C -0.107 4.107 14 C 0.500 3.500 15 O -0.508 6.508 16 N -0.646 5.646 17 C 0.004 3.996 18 C -0.080 4.080 19 C -0.205 4.205 20 C 0.107 3.893 21 C -0.463 4.463 22 H 0.077 0.923 23 C 0.072 3.928 24 N -0.810 5.810 25 Si 0.913 3.087 26 H -0.269 1.269 27 H -0.278 1.278 28 H -0.263 1.263 29 C -0.139 4.139 30 C -0.116 4.116 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.130 0.870 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.121 0.879 41 H 0.127 0.873 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.075 0.925 45 H 0.395 0.605 46 H 0.101 0.899 47 H 0.097 0.903 48 H 0.279 0.721 49 H 0.122 0.878 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.811 4.108 -3.372 23.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.177 4.177 3 C 0.006 3.994 4 H 0.117 0.883 5 O -0.188 6.188 6 C 0.094 3.906 7 C -0.228 4.228 8 C -0.053 4.053 9 C -0.172 4.172 10 C -0.178 4.178 11 C -0.098 4.098 12 C -0.122 4.122 13 C -0.164 4.164 14 C 0.284 3.716 15 O -0.382 6.382 16 N -0.291 5.291 17 C -0.088 4.088 18 C -0.100 4.100 19 C -0.225 4.225 20 C 0.104 3.896 21 C -0.493 4.493 22 H 0.095 0.905 23 C -0.144 4.144 24 N -0.436 5.436 25 Si 0.738 3.262 26 H -0.194 1.194 27 H -0.204 1.204 28 H -0.187 1.187 29 C -0.159 4.159 30 C -0.136 4.136 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.148 0.852 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.139 0.861 41 H 0.145 0.855 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.229 0.771 46 H 0.119 0.881 47 H 0.115 0.885 48 H 0.089 0.911 49 H 0.140 0.860 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -22.161 4.298 -3.971 22.921 hybrid contribution 0.455 -0.296 0.835 0.996 sum -21.707 4.002 -3.136 22.294 Atomic orbital electron populations 1.21909 0.94575 1.02357 1.02320 1.22004 0.97128 0.94131 1.04415 1.22386 0.93847 0.94994 0.88193 0.88314 1.86224 1.37013 1.62195 1.33372 1.18853 0.85946 0.92080 0.93671 1.21138 0.98266 1.05902 0.97512 1.19641 0.94413 0.95718 0.95561 1.20808 0.99819 1.02296 0.94266 1.20878 1.01155 1.03426 0.92293 1.20846 0.93520 0.97267 0.98161 1.19266 0.97168 1.01790 0.94017 1.20628 1.00873 1.01590 0.93303 1.20081 0.88568 0.79408 0.83528 1.90738 1.64474 1.43183 1.39783 1.42875 1.06715 1.59623 1.19890 1.17158 0.80221 1.16306 0.95139 1.20252 0.94272 0.99642 0.95863 1.20794 0.93004 1.10594 0.98107 1.17694 0.93612 0.87551 0.90698 1.19509 0.91878 1.35497 1.02455 0.90473 1.25870 1.00688 0.93216 0.94610 1.69780 1.37447 1.28659 1.07761 0.86231 0.82236 0.78412 0.79314 1.19440 1.20350 1.18706 1.20942 0.91679 1.03576 0.99736 1.20257 0.95269 1.03764 0.94356 0.92099 0.91976 0.92389 0.89971 0.89634 0.85198 0.91040 0.91524 0.91404 0.86136 0.85525 0.91541 0.91868 0.90569 0.77094 0.88092 0.88473 0.91062 0.86048 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.50 37.16 0.32 -1.03 16 2 C -0.14 -1.45 5.59 -26.73 -0.15 -1.60 16 3 C 0.07 0.85 2.58 -27.88 -0.07 0.78 16 4 H 0.10 1.06 5.28 -51.93 -0.27 0.79 16 5 O -0.28 -4.05 8.24 -39.36 -0.32 -4.38 16 6 C 0.14 1.78 5.23 -39.22 -0.21 1.58 16 7 C -0.21 -2.25 6.95 -39.43 -0.27 -2.52 16 8 C -0.05 -0.50 5.88 -104.65 -0.62 -1.12 16 9 C -0.12 -0.78 10.01 36.00 0.36 -0.42 16 10 C -0.16 -1.45 9.70 -39.56 -0.38 -1.83 16 11 C -0.08 -0.78 9.70 -39.60 -0.38 -1.16 16 12 C -0.12 -1.43 5.89 -104.47 -0.62 -2.05 16 13 C -0.11 -1.18 9.79 36.01 0.35 -0.82 16 14 C 0.50 8.73 6.94 -10.99 -0.08 8.66 16 15 O -0.51 -11.29 14.26 -14.35 -0.20 -11.50 16 16 N -0.65 -11.00 5.11 -9.74 -0.05 -11.05 16 17 C 0.00 0.08 6.26 -83.57 -0.52 -0.45 16 18 C -0.08 -1.92 8.57 -39.79 -0.34 -2.26 16 19 C -0.20 -5.19 9.74 -39.26 -0.38 -5.57 16 20 C 0.11 2.85 5.50 -106.80 -0.59 2.27 16 21 C -0.46 -12.30 9.03 -37.86 -0.34 -12.64 16 22 H 0.08 1.99 7.85 -52.49 -0.41 1.57 16 23 C 0.07 1.80 5.31 -17.33 -0.09 1.71 16 24 N -0.81 -20.75 10.96 55.55 0.61 -20.14 16 25 Si 0.91 18.83 29.56 -169.99 -5.03 13.80 16 26 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 27 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 28 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 29 C -0.14 -3.54 8.57 -39.26 -0.34 -3.87 16 30 C -0.12 -2.60 9.90 -39.79 -0.39 -3.00 16 31 H 0.06 0.61 6.34 -51.93 -0.33 0.28 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.44 7.00 -51.93 -0.36 0.07 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.09 0.77 7.56 -51.93 -0.39 0.38 16 36 H 0.13 1.21 4.76 -52.49 -0.25 0.96 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 39 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 40 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 44 H 0.08 1.00 7.53 -51.93 -0.39 0.61 16 45 H 0.40 5.13 8.36 -40.82 -0.34 4.78 16 46 H 0.10 2.38 6.50 -52.49 -0.34 2.04 16 47 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 48 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 49 H 0.12 3.16 6.46 -52.48 -0.34 2.82 16 50 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 LS Contribution 404.09 15.07 6.09 6.09 Total: -1.00 -31.29 404.09 -10.86 -42.15 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -7.21 Total: 10.37 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: -4.74 Total: -25.35 kcal Atomic # 7 Polarization: -31.74 SS G_CDS: 0.56 Total: -31.19 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.53 Total: -15.87 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.29 -10.86 -42.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020452741.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.125 kcal (2) G-P(sol) polarization free energy of solvation -31.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds