Wall clock time and date at job start Tue Mar 31 2020 06:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34510 * 125.79207 * 2 1 4 4 C 1.41380 * 106.84451 * 180.02562 * 3 2 1 5 5 C 1.34520 * 106.83653 * 359.97438 * 4 3 2 6 6 C 1.50704 * 125.78517 * 180.02562 * 5 4 3 7 7 N 1.46897 * 109.47207 * 90.00119 * 6 5 4 8 8 C 1.46903 * 110.99527 * 293.95021 * 7 6 5 9 9 C 1.46903 * 111.00232 * 169.99899 * 7 6 5 10 10 C 1.50697 * 109.47179 * 189.99564 * 9 7 6 11 11 N 1.29825 * 118.34897 * 359.97438 * 10 9 7 12 12 C 1.35634 * 121.62648 * 180.02562 * 11 10 9 13 13 C 1.39635 * 121.62692 * 180.02562 * 12 11 10 14 14 C 1.37712 * 119.69167 * 179.97438 * 13 12 11 15 15 C 1.38872 * 120.83313 * 0.02562 * 14 13 12 16 16 C 1.37799 * 120.56367 * 359.97438 * 15 14 13 17 17 C 1.39364 * 119.52081 * 0.02562 * 16 15 14 18 18 C 1.46959 * 121.90337 * 180.02562 * 17 16 15 19 19 O 1.21722 * 121.29118 * 359.97438 * 18 17 16 20 20 N 1.35346 * 117.42341 * 179.97438 * 18 17 16 21 21 C 1.37111 * 119.71782 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00446 * 134.78686 * 21 20 18 23 23 C 1.39081 * 119.99397 * 314.78919 * 21 20 18 24 24 N 1.31258 * 119.99403 * 160.64138 * 23 21 20 25 25 Si 1.86798 * 120.00228 * 340.63854 * 23 21 20 26 26 H 1.48500 * 109.47053 * 95.24881 * 25 23 21 27 27 H 1.48502 * 109.46838 * 215.24309 * 25 23 21 28 28 H 1.48498 * 109.47402 * 335.24507 * 25 23 21 29 29 O 1.34301 * 108.42171 * 0.26157 * 5 4 3 30 30 H 1.09000 * 109.47496 * 90.00088 * 1 2 3 31 31 H 1.09000 * 109.47646 * 210.00565 * 1 2 3 32 32 H 1.09004 * 109.47283 * 330.00224 * 1 2 3 33 33 H 1.08002 * 126.57854 * 0.04617 * 3 2 1 34 34 H 1.07992 * 126.58247 * 180.02562 * 4 3 2 35 35 H 1.08995 * 109.47330 * 329.99391 * 6 5 4 36 36 H 1.08996 * 109.46533 * 209.99654 * 6 5 4 37 37 H 1.09000 * 109.47682 * 296.04209 * 8 7 6 38 38 H 1.08996 * 109.47307 * 56.05222 * 8 7 6 39 39 H 1.09002 * 109.47124 * 176.04972 * 8 7 6 40 40 H 1.09000 * 109.47137 * 69.99603 * 9 7 6 41 41 H 1.09001 * 109.46547 * 309.99807 * 9 7 6 42 42 H 1.07997 * 120.15157 * 359.97438 * 13 12 11 43 43 H 1.08004 * 119.58152 * 180.27490 * 14 13 12 44 44 H 1.07996 * 119.72197 * 179.97438 * 15 14 13 45 45 H 1.08004 * 120.23454 * 180.02562 * 16 15 14 46 46 H 0.96997 * 119.99848 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6320 -0.0006 5 6 3.5813 -0.7123 -0.0004 6 6 4.7705 -1.6380 -0.0003 7 7 5.1570 -1.9385 1.3847 8 6 5.6512 -0.7347 2.0663 9 6 6.1540 -3.0164 1.4310 10 6 6.3437 -3.4643 2.8573 11 7 5.6500 -2.8781 3.7850 12 6 5.7684 -3.2280 5.0901 13 6 5.0219 -2.5979 6.0878 14 6 5.1734 -2.9854 7.4005 15 6 6.0608 -3.9961 7.7465 16 6 6.8086 -4.6330 6.7801 17 6 6.6705 -4.2561 5.4456 18 6 7.4412 -4.9002 4.3728 19 8 8.2342 -5.7922 4.6120 20 7 7.2352 -4.4633 3.1085 21 6 7.9290 -5.0316 2.0714 22 1 7.4140 -5.3039 1.1621 23 6 9.2962 -5.2575 2.1906 24 7 9.8904 -6.1193 1.3986 25 14 10.2867 -4.3345 3.4776 26 1 10.4070 -5.1677 4.7009 27 1 11.6409 -4.0412 2.9433 28 1 9.5998 -3.0611 3.8115 29 8 2.2923 -1.0895 -0.0055 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.9665 2.1204 0.0007 34 1 4.5211 1.2432 -0.0004 35 1 5.6038 -1.1590 -0.5143 36 1 4.5104 -2.5635 -0.5139 37 1 6.5625 -0.3890 1.5784 38 1 4.8936 0.0475 2.0173 39 1 5.8642 -0.9692 3.1093 40 1 7.1021 -2.6516 1.0356 41 1 5.8086 -3.8568 0.8290 42 1 4.3290 -1.8103 5.8311 43 1 4.5918 -2.4998 8.1703 44 1 6.1656 -4.2854 8.7817 45 1 7.4968 -5.4187 7.0551 46 1 10.8439 -6.2766 1.4814 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022006607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:05 Heat of formation + Delta-G solvation = 60.127844 kcal Electronic energy + Delta-G solvation = -31281.746138 eV Core-core repulsion = 27139.214992 eV Total energy + Delta-G solvation = -4142.531146 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.52615 -40.89318 -37.96995 -37.69677 -36.12824 -33.93657 -33.12893 -32.27629 -32.21690 -30.67106 -29.97396 -28.32235 -27.45446 -25.91269 -25.32244 -23.27080 -22.67046 -21.68627 -21.45992 -20.81896 -20.05183 -18.89585 -18.04421 -17.35776 -16.49778 -16.30336 -16.00086 -15.36432 -15.20183 -14.89820 -14.77762 -14.53190 -14.18493 -14.08176 -13.55383 -13.51044 -13.39515 -13.18847 -13.05776 -12.94117 -12.91618 -12.76813 -12.50054 -12.30786 -12.18360 -12.00944 -11.49218 -11.48358 -11.40039 -11.23821 -11.10190 -10.85751 -10.66064 -10.32553 -9.80481 -9.46013 -9.12318 -8.97421 -8.81694 -8.55227 -8.33492 -8.01947 -7.28309 -6.79747 -4.64253 1.25188 1.40083 1.72841 2.60471 2.91444 2.93242 3.06741 3.15259 3.27921 3.54957 3.65350 4.06861 4.31731 4.52744 4.62383 4.65894 4.86253 4.91789 5.05275 5.09347 5.16208 5.26114 5.28811 5.33637 5.38541 5.42322 5.52626 5.56944 5.67642 5.70851 5.83021 5.84337 5.92954 5.93914 5.97724 6.01017 6.19152 6.23525 6.43751 6.55426 6.58338 6.61552 6.84302 6.87283 7.09996 7.16739 7.23748 7.30203 7.37197 7.41579 7.89071 8.23092 8.61220 8.90525 9.06457 10.21727 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.010732 B = 0.003549 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.344748 B = 7887.283437 C = 9771.659140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.019 4.019 3 C -0.213 4.213 4 C -0.208 4.208 5 C 0.014 3.986 6 C 0.129 3.871 7 N -0.517 5.517 8 C 0.017 3.983 9 C 0.123 3.877 10 C 0.372 3.628 11 N -0.534 5.534 12 C 0.168 3.832 13 C -0.126 4.126 14 C -0.086 4.086 15 C -0.170 4.170 16 C -0.040 4.040 17 C -0.214 4.214 18 C 0.497 3.503 19 O -0.511 6.511 20 N -0.371 5.371 21 C -0.383 4.383 22 H 0.120 0.880 23 C 0.109 3.891 24 N -0.822 5.822 25 Si 0.890 3.110 26 H -0.248 1.248 27 H -0.287 1.287 28 H -0.272 1.272 29 O -0.166 6.166 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.016 0.984 38 H 0.065 0.935 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.104 0.896 42 H 0.129 0.871 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.126 0.874 46 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.252 12.823 -0.695 17.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.070 4.070 3 C -0.233 4.233 4 C -0.228 4.228 5 C -0.037 4.037 6 C 0.001 3.999 7 N -0.242 5.242 8 C -0.131 4.131 9 C -0.006 4.006 10 C 0.109 3.891 11 N -0.260 5.260 12 C 0.052 3.948 13 C -0.146 4.146 14 C -0.106 4.106 15 C -0.189 4.189 16 C -0.060 4.060 17 C -0.221 4.221 18 C 0.294 3.706 19 O -0.389 6.389 20 N -0.076 5.076 21 C -0.509 4.509 22 H 0.137 0.863 23 C -0.108 4.108 24 N -0.451 5.451 25 Si 0.717 3.283 26 H -0.173 1.173 27 H -0.214 1.214 28 H -0.197 1.197 29 O -0.062 6.062 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.161 0.839 34 H 0.162 0.838 35 H 0.085 0.915 36 H 0.111 0.889 37 H 0.034 0.966 38 H 0.083 0.917 39 H 0.117 0.883 40 H 0.092 0.908 41 H 0.122 0.878 42 H 0.147 0.853 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.144 0.856 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.595 12.207 -0.482 17.547 hybrid contribution 1.900 0.145 0.402 1.948 sum -10.695 12.352 -0.081 16.339 Atomic orbital electron populations 1.20262 0.85480 1.03938 1.03164 1.22376 0.93930 0.84369 1.06319 1.21487 0.92789 0.99112 1.09872 1.21524 0.98014 0.93896 1.09383 1.22171 0.82887 0.94004 1.04630 1.20489 0.90571 0.97847 0.90983 1.61611 1.41340 1.08335 1.12872 1.22686 0.97353 0.91252 1.01832 1.20800 0.94878 0.94783 0.90150 1.22776 0.87452 0.82846 0.96040 1.68535 1.28687 1.30257 0.98553 1.18891 0.92756 0.91945 0.91193 1.20655 1.01059 1.01617 0.91226 1.21047 0.97350 0.96394 0.95765 1.20897 0.99775 0.99356 0.98857 1.20933 0.96609 0.97397 0.91043 1.20773 1.03757 1.02548 0.95070 1.18632 0.84871 0.84054 0.83051 1.90708 1.35976 1.30135 1.82082 1.42458 1.31221 1.25540 1.08414 1.19255 0.91872 1.43383 0.96379 0.86256 1.25258 0.96820 0.93032 0.95655 1.69640 1.12512 1.26101 1.36819 0.86600 0.78790 0.80014 0.82884 1.17278 1.21410 1.19670 1.83983 1.16391 1.34825 1.70970 0.90423 0.90568 0.89609 0.83902 0.83819 0.91467 0.88899 0.96578 0.91658 0.88332 0.90779 0.87779 0.85341 0.86156 0.86259 0.85584 0.90461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.42 36.00 0.38 -0.18 16 2 C -0.02 -0.23 7.32 -35.63 -0.26 -0.49 16 3 C -0.21 -2.42 10.81 -39.70 -0.43 -2.85 16 4 C -0.21 -2.53 9.30 -39.70 -0.37 -2.90 16 5 C 0.01 0.19 6.23 -35.62 -0.22 -0.03 16 6 C 0.13 1.64 5.50 -4.98 -0.03 1.61 16 7 N -0.52 -7.97 4.41 -245.83 -1.09 -9.06 16 8 C 0.02 0.25 8.92 60.07 0.54 0.78 16 9 C 0.12 2.11 4.12 -4.98 -0.02 2.09 16 10 C 0.37 7.81 7.22 -154.88 -1.12 6.69 16 11 N -0.53 -10.87 7.06 -8.10 -0.06 -10.93 16 12 C 0.17 3.42 6.63 -84.49 -0.56 2.86 16 13 C -0.13 -2.11 10.03 -39.25 -0.39 -2.51 16 14 C -0.09 -1.25 10.00 -39.54 -0.40 -1.65 16 15 C -0.17 -2.64 10.02 -39.51 -0.40 -3.03 16 16 C -0.04 -0.77 9.68 -39.32 -0.38 -1.15 16 17 C -0.21 -4.74 5.89 -104.78 -0.62 -5.36 16 18 C 0.50 12.61 5.85 -12.47 -0.07 12.53 16 19 O -0.51 -14.23 12.75 5.17 0.07 -14.17 16 20 N -0.37 -9.00 2.26 -59.56 -0.13 -9.13 16 21 C -0.38 -9.80 8.54 -14.88 -0.13 -9.93 16 22 H 0.12 3.01 7.37 -52.49 -0.39 2.63 16 23 C 0.11 2.91 4.86 -17.48 -0.08 2.82 16 24 N -0.82 -22.35 13.95 55.50 0.77 -21.58 16 25 Si 0.89 22.26 24.99 -169.99 -4.25 18.01 16 26 H -0.25 -6.57 6.46 56.52 0.36 -6.20 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 29 O -0.17 -2.36 10.65 5.71 0.06 -2.30 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.14 1.52 8.06 -52.49 -0.42 1.09 16 35 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 36 H 0.09 1.11 7.93 -51.93 -0.41 0.70 16 37 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.06 0.91 6.09 -51.93 -0.32 0.59 16 39 H 0.10 1.68 5.64 -51.93 -0.29 1.39 16 40 H 0.07 1.25 8.02 -51.93 -0.42 0.83 16 41 H 0.10 1.70 7.42 -51.93 -0.39 1.32 16 42 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 43 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 44 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 45 H 0.13 2.38 7.83 -52.48 -0.41 1.97 16 46 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 377.67 15.07 5.69 5.69 Total: -1.00 -31.52 377.67 -9.52 -41.04 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -6.02 Total: 3.12 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -4.56 Total: -0.69 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.50 Total: -50.71 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: 0.13 Total: -16.47 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.25 Total: 18.01 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.52 -9.52 -41.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022006607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.168 kcal (2) G-P(sol) polarization free energy of solvation -31.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds