Wall clock time and date at job start Tue Mar 31 2020 06:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34510 * 125.79207 * 2 1 4 4 C 1.41380 * 106.84451 * 180.02562 * 3 2 1 5 5 C 1.34520 * 106.83653 * 359.97438 * 4 3 2 6 6 C 1.50704 * 125.78517 * 180.02562 * 5 4 3 7 7 N 1.46897 * 109.47207 * 90.00119 * 6 5 4 8 8 C 1.46903 * 110.99527 * 293.95021 * 7 6 5 9 9 C 1.46903 * 111.00232 * 169.99899 * 7 6 5 10 10 C 1.50697 * 109.47179 * 189.99564 * 9 7 6 11 11 N 1.29825 * 118.34897 * 359.97438 * 10 9 7 12 12 C 1.35634 * 121.62648 * 180.02562 * 11 10 9 13 13 C 1.39635 * 121.62692 * 180.02562 * 12 11 10 14 14 C 1.37712 * 119.69167 * 179.97438 * 13 12 11 15 15 C 1.38872 * 120.83313 * 0.02562 * 14 13 12 16 16 C 1.37799 * 120.56367 * 359.97438 * 15 14 13 17 17 C 1.39364 * 119.52081 * 0.02562 * 16 15 14 18 18 C 1.46959 * 121.90337 * 180.02562 * 17 16 15 19 19 O 1.21722 * 121.29118 * 359.97438 * 18 17 16 20 20 N 1.35346 * 117.42341 * 179.97438 * 18 17 16 21 21 C 1.37111 * 119.71782 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00446 * 134.78686 * 21 20 18 23 23 C 1.39081 * 119.99397 * 314.78919 * 21 20 18 24 24 N 1.31258 * 119.99403 * 160.64138 * 23 21 20 25 25 Si 1.86798 * 120.00228 * 340.63854 * 23 21 20 26 26 H 1.48500 * 109.47053 * 95.24881 * 25 23 21 27 27 H 1.48502 * 109.46838 * 215.24309 * 25 23 21 28 28 H 1.48498 * 109.47402 * 335.24507 * 25 23 21 29 29 O 1.34301 * 108.42171 * 0.26157 * 5 4 3 30 30 H 1.09000 * 109.47496 * 90.00088 * 1 2 3 31 31 H 1.09000 * 109.47646 * 210.00565 * 1 2 3 32 32 H 1.09004 * 109.47283 * 330.00224 * 1 2 3 33 33 H 1.08002 * 126.57854 * 0.04617 * 3 2 1 34 34 H 1.07992 * 126.58247 * 180.02562 * 4 3 2 35 35 H 1.08995 * 109.47330 * 329.99391 * 6 5 4 36 36 H 1.08996 * 109.46533 * 209.99654 * 6 5 4 37 37 H 1.09000 * 109.47682 * 296.04209 * 8 7 6 38 38 H 1.08996 * 109.47307 * 56.05222 * 8 7 6 39 39 H 1.09002 * 109.47124 * 176.04972 * 8 7 6 40 40 H 1.09000 * 109.47137 * 69.99603 * 9 7 6 41 41 H 1.09001 * 109.46547 * 309.99807 * 9 7 6 42 42 H 1.07997 * 120.15157 * 359.97438 * 13 12 11 43 43 H 1.08004 * 119.58152 * 180.27490 * 14 13 12 44 44 H 1.07996 * 119.72197 * 179.97438 * 15 14 13 45 45 H 1.08004 * 120.23454 * 180.02562 * 16 15 14 46 46 H 0.96997 * 119.99848 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6320 -0.0006 5 6 3.5813 -0.7123 -0.0004 6 6 4.7705 -1.6380 -0.0003 7 7 5.1570 -1.9385 1.3847 8 6 5.6512 -0.7347 2.0663 9 6 6.1540 -3.0164 1.4310 10 6 6.3437 -3.4643 2.8573 11 7 5.6500 -2.8781 3.7850 12 6 5.7684 -3.2280 5.0901 13 6 5.0219 -2.5979 6.0878 14 6 5.1734 -2.9854 7.4005 15 6 6.0608 -3.9961 7.7465 16 6 6.8086 -4.6330 6.7801 17 6 6.6705 -4.2561 5.4456 18 6 7.4412 -4.9002 4.3728 19 8 8.2342 -5.7922 4.6120 20 7 7.2352 -4.4633 3.1085 21 6 7.9290 -5.0316 2.0714 22 1 7.4140 -5.3039 1.1621 23 6 9.2962 -5.2575 2.1906 24 7 9.8904 -6.1193 1.3986 25 14 10.2867 -4.3345 3.4776 26 1 10.4070 -5.1677 4.7009 27 1 11.6409 -4.0412 2.9433 28 1 9.5998 -3.0611 3.8115 29 8 2.2923 -1.0895 -0.0055 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.9665 2.1204 0.0007 34 1 4.5211 1.2432 -0.0004 35 1 5.6038 -1.1590 -0.5143 36 1 4.5104 -2.5635 -0.5139 37 1 6.5625 -0.3890 1.5784 38 1 4.8936 0.0475 2.0173 39 1 5.8642 -0.9692 3.1093 40 1 7.1021 -2.6516 1.0356 41 1 5.8086 -3.8568 0.8290 42 1 4.3290 -1.8103 5.8311 43 1 4.5918 -2.4998 8.1703 44 1 6.1656 -4.2854 8.7817 45 1 7.4968 -5.4187 7.0551 46 1 10.8439 -6.2766 1.4814 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000022006607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:04 Heat of formation + Delta-G solvation = 41.563766 kcal Electronic energy + Delta-G solvation = -31282.551137 eV Core-core repulsion = 27139.214992 eV Total energy + Delta-G solvation = -4143.336145 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.153 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.44346 -42.58518 -39.44206 -39.22760 -37.64457 -35.68962 -34.12910 -34.01223 -33.16189 -32.14473 -31.28705 -29.37886 -28.77642 -27.73644 -26.38006 -24.82619 -24.03768 -22.88134 -22.61160 -22.22283 -20.97413 -20.69024 -19.68309 -18.91590 -17.94578 -17.40698 -17.26460 -16.96974 -16.67232 -16.22605 -16.12767 -15.89605 -15.62458 -15.41645 -15.18997 -14.94251 -14.69303 -14.65134 -14.56867 -14.10036 -13.80151 -13.72669 -13.66320 -13.59740 -13.46276 -13.20061 -12.96245 -12.80666 -12.74928 -12.61313 -12.44728 -12.39992 -12.20815 -12.05693 -11.30494 -11.02043 -10.72112 -10.68393 -10.57519 -10.02422 -9.37271 -9.06522 -8.91472 -8.76743 -6.64583 -0.27284 -0.09995 0.80150 1.04469 1.13493 1.24140 1.31797 1.70292 1.90158 1.97418 2.11513 2.13825 2.67188 3.07550 3.09766 3.18525 3.58380 3.78844 3.82055 4.00858 4.10030 4.15437 4.21021 4.26416 4.37929 4.38580 4.44683 4.48392 4.57636 4.64465 4.73522 4.74650 4.76988 4.86025 4.93300 5.00479 5.04884 5.14942 5.19570 5.27908 5.31493 5.37023 5.47972 5.50184 5.58911 5.73776 5.87552 5.95360 6.05403 6.14240 6.33186 6.36989 6.69059 7.16565 7.24761 8.25688 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.010732 B = 0.003549 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.344748 B = 7887.283437 C = 9771.659140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.029 4.029 3 C -0.223 4.223 4 C -0.206 4.206 5 C -0.012 4.012 6 C 0.130 3.870 7 N -0.526 5.526 8 C 0.024 3.976 9 C 0.129 3.871 10 C 0.365 3.635 11 N -0.518 5.518 12 C 0.138 3.862 13 C -0.121 4.121 14 C -0.065 4.065 15 C -0.141 4.141 16 C -0.068 4.068 17 C -0.239 4.239 18 C 0.478 3.522 19 O -0.558 6.558 20 N -0.388 5.388 21 C -0.385 4.385 22 H 0.113 0.887 23 C 0.080 3.920 24 N -0.857 5.857 25 Si 0.927 3.073 26 H -0.277 1.277 27 H -0.267 1.267 28 H -0.278 1.278 29 O -0.192 6.192 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.167 0.833 34 H 0.158 0.842 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.025 0.975 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.108 0.892 42 H 0.153 0.847 43 H 0.175 0.825 44 H 0.163 0.837 45 H 0.117 0.883 46 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.029 15.956 1.202 21.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.079 4.079 3 C -0.242 4.242 4 C -0.226 4.226 5 C -0.062 4.062 6 C 0.004 3.996 7 N -0.251 5.251 8 C -0.124 4.124 9 C 0.000 4.000 10 C 0.102 3.898 11 N -0.242 5.242 12 C 0.024 3.976 13 C -0.140 4.140 14 C -0.084 4.084 15 C -0.160 4.160 16 C -0.088 4.088 17 C -0.246 4.246 18 C 0.276 3.724 19 O -0.439 6.439 20 N -0.095 5.095 21 C -0.512 4.512 22 H 0.131 0.869 23 C -0.132 4.132 24 N -0.489 5.489 25 Si 0.755 3.245 26 H -0.204 1.204 27 H -0.193 1.193 28 H -0.203 1.203 29 O -0.089 6.089 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.126 0.874 33 H 0.185 0.815 34 H 0.176 0.824 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.044 0.956 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.126 0.874 42 H 0.170 0.830 43 H 0.193 0.807 44 H 0.180 0.820 45 H 0.135 0.865 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.412 15.404 1.421 21.837 hybrid contribution 2.446 -0.658 0.081 2.534 sum -12.966 14.746 1.502 19.694 Atomic orbital electron populations 1.20451 0.82939 1.04929 1.04487 1.23189 0.95518 0.83937 1.05230 1.21840 0.92368 1.00252 1.09726 1.21805 0.99069 0.93592 1.08092 1.22255 0.82811 0.94563 1.06585 1.20525 0.91218 0.98408 0.89474 1.61566 1.40498 1.08116 1.14879 1.22571 0.98135 0.91241 1.00473 1.20770 0.95617 0.95691 0.87903 1.23429 0.85990 0.82580 0.97847 1.68650 1.27334 1.29395 0.98861 1.19374 0.93738 0.92537 0.91965 1.21063 1.00213 1.01349 0.91369 1.21663 0.95999 0.94829 0.95940 1.21439 0.97141 0.97454 0.99927 1.21107 0.98234 0.98581 0.90844 1.20907 1.04503 1.03666 0.95480 1.19271 0.84936 0.83998 0.84183 1.90651 1.38146 1.32288 1.82858 1.42488 1.32261 1.26954 1.07840 1.19183 0.91711 1.43702 0.96553 0.86929 1.25632 0.97695 0.93560 0.96353 1.69669 1.12923 1.27814 1.38489 0.86049 0.79078 0.78554 0.80843 1.20358 1.19335 1.20327 1.83966 1.17010 1.36285 1.71613 0.88863 0.90688 0.87449 0.81535 0.82441 0.89612 0.88642 0.95639 0.90593 0.90568 0.90620 0.87365 0.82982 0.80737 0.81982 0.86480 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 10.42 71.23 0.74 -0.19 16 2 C -0.03 -0.62 7.32 24.83 0.18 -0.44 16 3 C -0.22 -4.52 10.81 22.19 0.24 -4.28 16 4 C -0.21 -4.60 9.30 22.19 0.21 -4.39 16 5 C -0.01 -0.31 6.23 24.84 0.15 -0.15 16 6 C 0.13 3.23 5.50 85.56 0.47 3.70 16 7 N -0.53 -15.88 4.41 -931.66 -4.11 -20.00 16 8 C 0.02 0.67 8.92 127.69 1.14 1.81 16 9 C 0.13 4.50 4.12 85.56 0.35 4.85 16 10 C 0.37 15.66 7.22 137.94 1.00 16.66 16 11 N -0.52 -20.91 7.06 -179.54 -1.27 -22.18 16 12 C 0.14 5.45 6.63 39.65 0.26 5.71 16 13 C -0.12 -3.58 10.03 22.48 0.23 -3.36 16 14 C -0.07 -1.53 10.00 22.30 0.22 -1.30 16 15 C -0.14 -3.76 10.02 22.32 0.22 -3.54 16 16 C -0.07 -2.55 9.68 22.44 0.22 -2.33 16 17 C -0.24 -10.68 5.89 -19.96 -0.12 -10.80 16 18 C 0.48 25.32 5.85 86.44 0.51 25.83 16 19 O -0.56 -32.94 12.75 -4.42 -0.06 -32.99 16 20 N -0.39 -19.62 2.26 -460.24 -1.04 -20.66 16 21 C -0.39 -20.72 8.54 84.07 0.72 -20.00 16 22 H 0.11 6.01 7.37 -2.91 -0.02 5.99 16 23 C 0.08 4.48 4.86 84.98 0.41 4.89 16 24 N -0.86 -48.79 13.95 21.68 0.30 -48.48 16 25 Si 0.93 47.94 24.99 68.60 1.71 49.65 16 26 H -0.28 -15.51 6.46 99.48 0.64 -14.86 16 27 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 28 H -0.28 -14.34 7.11 99.48 0.71 -13.63 16 29 O -0.19 -5.29 10.65 -2.48 -0.03 -5.32 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 34 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 35 H 0.09 1.79 8.12 -2.39 -0.02 1.77 16 36 H 0.10 2.27 7.93 -2.39 -0.02 2.25 16 37 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.08 1.98 6.09 -2.39 -0.01 1.97 16 39 H 0.08 2.52 5.64 -2.39 -0.01 2.51 16 40 H 0.08 2.60 8.02 -2.39 -0.02 2.58 16 41 H 0.11 3.65 7.42 -2.39 -0.02 3.64 16 42 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 43 H 0.18 2.38 8.06 -2.91 -0.02 2.36 16 44 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 45 H 0.12 4.52 7.83 -2.91 -0.02 4.50 16 46 H 0.29 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -73.74 377.67 3.61 -70.13 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.94 Total: 17.17 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 7.15 Total: 12.68 kcal Atomic # 7 Polarization: -105.20 SS G_CDS: -6.12 Total: -111.32 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -0.08 Total: -38.31 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 1.71 Total: 49.65 kcal Total: -73.74 3.61 -70.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022006607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.692 kcal (2) G-P(sol) polarization free energy of solvation -73.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds