Wall clock time and date at job start Tue Mar 31 2020 06:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47253 * 2 1 4 4 H 1.08998 * 109.47510 * 54.99681 * 3 2 1 5 5 O 1.42905 * 109.47303 * 294.99342 * 3 2 1 6 6 C 1.35897 * 116.99619 * 98.93823 * 5 3 2 7 7 C 1.38751 * 120.05795 * 355.17210 * 6 5 3 8 8 C 1.38123 * 119.94205 * 179.97438 * 7 6 5 9 9 C 1.38285 * 120.06068 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.94697 * 180.02562 * 9 8 7 11 11 C 1.38251 * 120.10777 * 0.02562 * 9 8 7 12 12 C 1.50703 * 119.96829 * 179.97438 * 11 9 8 13 13 C 1.38164 * 120.05566 * 359.97438 * 11 9 8 14 14 C 1.50700 * 109.47201 * 174.99645 * 3 2 1 15 15 O 1.21282 * 120.00145 * 119.99832 * 14 3 2 16 16 N 1.34777 * 120.00190 * 299.99767 * 14 3 2 17 17 C 1.39241 * 120.00222 * 184.95091 * 16 14 3 18 18 C 1.39477 * 119.83141 * 213.54090 * 17 16 14 19 19 C 1.36376 * 120.16933 * 179.75918 * 18 17 16 20 20 C 1.40873 * 119.82487 * 0.51287 * 19 18 17 21 21 C 1.41153 * 120.16556 * 179.72138 * 20 19 18 22 22 H 1.07995 * 120.00033 * 208.45754 * 21 20 19 23 23 C 1.39907 * 119.99779 * 28.45686 * 21 20 19 24 24 N 1.30875 * 120.00232 * 11.25677 * 23 21 20 25 25 Si 1.86802 * 119.99631 * 191.26015 * 23 21 20 26 26 H 1.48493 * 109.47487 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47249 * 120.00235 * 25 23 21 28 28 H 1.48502 * 109.47018 * 239.99595 * 25 23 21 29 29 C 1.40873 * 119.67155 * 359.73695 * 20 19 18 30 30 C 1.36366 * 119.82911 * 0.02562 * 29 20 19 31 31 H 1.08998 * 109.47146 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47265 * 300.00516 * 1 2 3 33 33 H 1.09000 * 109.46749 * 60.00190 * 1 2 3 34 34 H 1.09003 * 109.47605 * 239.99486 * 2 1 3 35 35 H 1.09002 * 109.46970 * 119.99315 * 2 1 3 36 36 H 1.07999 * 120.02837 * 359.97438 * 7 6 5 37 37 H 1.08004 * 119.97294 * 180.02562 * 8 7 6 38 38 H 1.08998 * 109.46783 * 90.00249 * 10 9 8 39 39 H 1.09000 * 109.46953 * 210.00140 * 10 9 8 40 40 H 1.09003 * 109.47036 * 329.99980 * 10 9 8 41 41 H 1.08994 * 109.47163 * 269.99185 * 12 11 9 42 42 H 1.08998 * 109.47375 * 29.99802 * 12 11 9 43 43 H 1.09000 * 109.46721 * 149.99525 * 12 11 9 44 44 H 1.07997 * 120.02493 * 180.27834 * 13 11 9 45 45 H 0.97000 * 119.99511 * 4.95079 * 16 14 3 46 46 H 1.08001 * 119.91782 * 0.02562 * 18 17 16 47 47 H 1.08000 * 120.08973 * 180.25004 * 19 18 17 48 48 H 0.96998 * 119.99893 * 179.97438 * 24 23 21 49 49 H 1.07997 * 120.08470 * 179.97438 * 29 20 19 50 50 H 1.07999 * 119.91671 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 0.8417 5 8 1.6621 2.0814 -1.2211 6 6 0.5610 2.8770 -1.1860 7 6 -0.1991 2.9610 -0.0282 8 6 -1.3175 3.7708 0.0050 9 6 -1.6798 4.4978 -1.1141 10 6 -2.9003 5.3810 -1.0749 11 6 -0.9241 4.4158 -2.2689 12 6 -1.3221 5.2091 -3.4869 13 6 0.1955 3.6073 -2.3073 14 6 3.5419 1.4442 0.1239 15 8 4.2217 1.9434 -0.7476 16 7 4.1297 0.8911 1.2033 17 6 5.5092 0.9833 1.3686 18 6 6.2061 -0.0597 1.9783 19 6 7.5579 0.0212 2.1394 20 6 8.2488 1.1667 1.6979 21 6 9.6471 1.2606 1.8663 22 1 10.1143 2.2282 1.9740 23 6 10.4278 0.0999 1.8936 24 7 9.9052 -1.0487 1.5463 25 14 12.2162 0.1896 2.4258 26 1 12.5620 1.5933 2.7649 27 1 12.4221 -0.6731 3.6169 28 1 13.0865 -0.2803 1.3181 29 6 7.5372 2.2183 1.0877 30 6 6.1863 2.1208 0.9292 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5137 0.8901 36 1 0.0836 2.3937 0.8462 37 1 -1.9093 3.8369 0.9061 38 1 -2.6157 6.3793 -0.7425 39 1 -3.3377 5.4408 -2.0715 40 1 -3.6301 4.9617 -0.3823 41 1 -1.9964 4.6146 -4.1033 42 1 -1.8259 6.1243 -3.1759 43 1 -0.4318 5.4622 -4.0625 44 1 0.7880 3.5470 -3.2082 45 1 3.5917 0.4288 1.8649 46 1 5.6745 -0.9356 2.3199 47 1 8.0969 -0.7890 2.6080 48 1 10.4466 -1.8533 1.5650 49 1 8.0601 3.0997 0.7471 50 1 5.6393 2.9264 0.4620 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022533169.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:21 Heat of formation + Delta-G solvation = -35.220643 kcal Electronic energy + Delta-G solvation = -30177.615912 eV Core-core repulsion = 26134.490488 eV Total energy + Delta-G solvation = -4043.125423 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 353.178 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.88450 -39.60745 -38.20952 -37.05912 -34.57788 -34.01203 -32.90436 -32.84248 -31.96872 -29.64413 -29.22096 -28.13406 -27.30751 -26.09063 -24.75867 -22.81357 -22.30617 -21.82305 -21.05625 -20.36558 -19.47547 -18.30366 -17.53472 -17.27681 -16.24146 -16.09772 -15.64004 -15.41947 -15.19563 -14.74058 -14.51843 -14.25102 -14.20746 -13.97176 -13.82777 -13.43678 -13.10517 -13.08996 -13.04670 -12.74915 -12.65316 -12.31742 -12.21932 -12.19966 -12.00275 -11.87810 -11.78521 -11.54048 -11.38525 -11.31645 -11.16557 -11.02445 -10.87008 -10.75491 -10.60050 -9.96352 -9.58906 -9.40785 -9.16249 -8.96516 -8.93013 -8.11283 -7.57719 -6.97187 -6.72419 -4.33753 1.13584 1.26331 2.47840 2.74307 2.95592 3.06112 3.07792 3.12876 3.32195 3.53299 3.78860 3.93352 4.45942 4.56615 4.57977 4.59532 4.65950 4.79110 4.83417 4.92489 5.01344 5.04776 5.15857 5.23362 5.31635 5.38077 5.39801 5.43057 5.55155 5.61083 5.66343 5.67314 5.75218 5.85019 5.92785 5.98940 6.15877 6.17582 6.21884 6.38754 6.44856 6.61860 6.71672 6.87609 7.02557 7.15589 7.23931 7.31158 7.57376 7.68115 7.84630 8.01500 8.21524 8.26046 8.57126 8.68522 8.87328 8.96213 10.20165 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.023060 B = 0.001867 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.927316 B =14991.749191 C =15581.181991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.139 4.139 3 C 0.067 3.933 4 H 0.101 0.899 5 O -0.280 6.280 6 C 0.136 3.864 7 C -0.215 4.215 8 C -0.076 4.076 9 C -0.131 4.131 10 C -0.109 4.109 11 C -0.048 4.048 12 C -0.116 4.116 13 C -0.149 4.149 14 C 0.496 3.504 15 O -0.507 6.507 16 N -0.645 5.645 17 C -0.004 4.004 18 C -0.114 4.114 19 C -0.148 4.148 20 C 0.105 3.895 21 C -0.456 4.456 22 H 0.078 0.922 23 C 0.071 3.929 24 N -0.799 5.799 25 Si 0.912 3.088 26 H -0.261 1.261 27 H -0.273 1.273 28 H -0.275 1.275 29 C -0.211 4.211 30 C -0.079 4.079 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.132 0.868 37 H 0.123 0.877 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.131 0.869 45 H 0.395 0.605 46 H 0.091 0.909 47 H 0.124 0.876 48 H 0.279 0.721 49 H 0.096 0.904 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.835 4.844 -1.762 24.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.177 4.177 3 C 0.007 3.993 4 H 0.118 0.882 5 O -0.192 6.192 6 C 0.090 3.910 7 C -0.234 4.234 8 C -0.094 4.094 9 C -0.132 4.132 10 C -0.165 4.165 11 C -0.048 4.048 12 C -0.173 4.173 13 C -0.167 4.167 14 C 0.281 3.719 15 O -0.381 6.381 16 N -0.290 5.290 17 C -0.096 4.096 18 C -0.134 4.134 19 C -0.167 4.167 20 C 0.102 3.898 21 C -0.486 4.486 22 H 0.096 0.904 23 C -0.145 4.145 24 N -0.425 5.425 25 Si 0.736 3.264 26 H -0.184 1.184 27 H -0.198 1.198 28 H -0.200 1.200 29 C -0.231 4.231 30 C -0.098 4.098 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.149 0.851 37 H 0.141 0.859 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.149 0.851 45 H 0.228 0.772 46 H 0.109 0.891 47 H 0.142 0.858 48 H 0.090 0.910 49 H 0.114 0.886 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -23.160 4.939 -2.613 23.824 hybrid contribution 0.576 -0.503 0.731 1.058 sum -22.584 4.436 -1.882 23.092 Atomic orbital electron populations 1.21927 0.94572 1.02400 1.02317 1.21995 0.97166 0.94159 1.04344 1.22405 0.93784 0.95073 0.88027 0.88154 1.86227 1.41747 1.58568 1.32621 1.19045 0.86662 0.90853 0.94415 1.21322 0.98644 1.05104 0.98298 1.20756 0.95891 0.95104 0.97654 1.19640 0.98701 1.01080 0.93745 1.20730 0.94805 0.98527 1.02480 1.19527 0.93761 0.96199 0.95312 1.20839 1.02135 0.99246 0.95047 1.20294 0.99049 0.99333 0.98068 1.20153 0.88688 0.80638 0.82458 1.90742 1.64375 1.43998 1.39022 1.42879 1.07463 1.55827 1.22823 1.17144 0.80754 0.97526 1.14167 1.20224 0.94998 0.95402 1.02783 1.20955 0.91562 1.00553 1.03673 1.17700 0.93333 0.90963 0.87813 1.19594 0.91951 0.93686 1.43405 0.90358 1.25924 1.01127 0.94848 0.92637 1.69820 1.38110 0.99904 1.34707 0.86204 0.81632 0.79598 0.78935 1.18446 1.19782 1.19991 1.20697 0.93368 1.01447 1.07592 1.20253 0.94639 0.95410 0.99544 0.91946 0.92357 0.92013 0.89893 0.89727 0.85061 0.85919 0.91546 0.91559 0.91872 0.90950 0.91129 0.91256 0.85110 0.77165 0.89070 0.85797 0.90968 0.88588 0.88098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.48 37.16 0.32 -1.03 16 2 C -0.14 -1.46 5.58 -26.73 -0.15 -1.61 16 3 C 0.07 0.90 2.56 -27.89 -0.07 0.83 16 4 H 0.10 1.11 5.41 -51.93 -0.28 0.83 16 5 O -0.28 -4.26 9.12 -39.33 -0.36 -4.62 16 6 C 0.14 1.77 5.62 -39.22 -0.22 1.55 16 7 C -0.22 -2.31 7.35 -39.43 -0.29 -2.60 16 8 C -0.08 -0.72 9.69 -39.61 -0.38 -1.10 16 9 C -0.13 -1.23 5.88 -104.60 -0.62 -1.85 16 10 C -0.11 -0.71 9.19 36.01 0.33 -0.38 16 11 C -0.05 -0.48 5.88 -104.64 -0.62 -1.10 16 12 C -0.12 -0.85 9.19 36.01 0.33 -0.52 16 13 C -0.15 -1.81 9.64 -39.43 -0.38 -2.19 16 14 C 0.50 8.95 6.96 -10.99 -0.08 8.87 16 15 O -0.51 -11.70 14.17 -14.36 -0.20 -11.90 16 16 N -0.65 -11.21 5.21 -9.74 -0.05 -11.26 16 17 C 0.00 -0.09 6.28 -83.57 -0.53 -0.61 16 18 C -0.11 -2.57 9.89 -39.79 -0.39 -2.97 16 19 C -0.15 -3.77 8.60 -39.26 -0.34 -4.10 16 20 C 0.10 2.81 5.55 -106.80 -0.59 2.21 16 21 C -0.46 -12.13 9.05 -37.85 -0.34 -12.48 16 22 H 0.08 2.00 7.87 -52.49 -0.41 1.59 16 23 C 0.07 1.79 5.24 -17.33 -0.09 1.70 16 24 N -0.80 -20.66 10.84 55.55 0.60 -20.06 16 25 Si 0.91 18.70 29.57 -169.99 -5.03 13.67 16 26 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 27 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 28 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 29 C -0.21 -5.40 9.74 -39.26 -0.38 -5.78 16 30 C -0.08 -1.91 8.57 -39.79 -0.34 -2.25 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.43 6.74 -51.93 -0.35 0.08 16 33 H 0.06 0.62 6.51 -51.93 -0.34 0.28 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 0.74 7.33 -51.93 -0.38 0.36 16 36 H 0.13 1.20 4.30 -52.49 -0.23 0.98 16 37 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.37 6.69 -51.93 -0.35 0.03 16 40 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.43 6.69 -51.93 -0.35 0.08 16 43 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 44 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 45 H 0.39 5.17 8.03 -40.82 -0.33 4.84 16 46 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 47 H 0.12 3.24 6.20 -52.49 -0.33 2.91 16 48 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 49 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 50 H 0.10 2.44 6.41 -52.49 -0.34 2.10 16 LS Contribution 400.65 15.07 6.04 6.04 Total: -1.00 -32.05 400.65 -10.86 -42.91 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -7.03 Total: 10.65 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -4.83 Total: -25.42 kcal Atomic # 7 Polarization: -31.87 SS G_CDS: 0.55 Total: -31.32 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.56 Total: -16.53 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.05 -10.86 -42.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022533169.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.689 kcal (2) G-P(sol) polarization free energy of solvation -32.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds